RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 TMEM87BQ96K49 555 aa15.45■□□□□ 0.06
VPS28-211ENST00000530790 PIGSQ96S52 555 aa15.45■□□□□ 0.06
VPS28-211ENST00000530790 RMDN3Q96TC7 470 aa15.45■□□□□ 0.06
VPS28-211ENST00000530790 RIOX1Q9H6W3 641 aa15.45■□□□□ 0.06
VPS28-211ENST00000530790 SZT2Q5T011 3432 aa15.45■□□□□ 0.06
VPS28-211ENST00000530790 CCDC69A6NI79 296 aa15.44■□□□□ 0.06
VPS28-211ENST00000530790 SH2B2O14492 632 aaPredicted RBP15.44■□□□□ 0.06
VPS28-211ENST00000530790 TXNP10599 105 aaKnown RBP15.44■□□□□ 0.06
VPS28-211ENST00000530790 EIF2AK2P19525 551 aaKnown RBP15.44■□□□□ 0.06
VPS28-211ENST00000530790 ITGB8P26012 769 aa15.44■□□□□ 0.06
VPS28-211ENST00000530790 HSD17B4P51659 736 aa15.44■□□□□ 0.06
VPS28-211ENST00000530790 FPGSQ05932 587 aa15.44■□□□□ 0.06
VPS28-211ENST00000530790 ITGA7Q13683 1181 aa15.44■□□□□ 0.06
VPS28-211ENST00000530790 TTLL4Q14679 1199 aa15.44■□□□□ 0.06
VPS28-211ENST00000530790 SLC35G1Q2M3R5 365 aa15.44■□□□□ 0.06
VPS28-211ENST00000530790 GPR153Q6NV75 609 aa15.44■□□□□ 0.06
VPS28-211ENST00000530790 FAM126BQ8IXS8 530 aa15.44■□□□□ 0.06
VPS28-211ENST00000530790 TAAR1Q96RJ0 339 aa15.44■□□□□ 0.06
VPS28-211ENST00000530790 IWS1Q96ST2 819 aa15.44■□□□□ 0.06
VPS28-211ENST00000530790 MYL10Q9BUA6 226 aa15.44■□□□□ 0.06
VPS28-211ENST00000530790 SEZ6LQ9BYH1 1024 aa15.44■□□□□ 0.06
VPS28-211ENST00000530790 POLR3EQ9NVU0 708 aa15.44■□□□□ 0.06
VPS28-211ENST00000530790 TBX21Q9UL17 535 aa15.44■□□□□ 0.06
VPS28-211ENST00000530790 MYH6P13533 1939 aa15.43■□□□□ 0.06
VPS28-211ENST00000530790 PNMA6FA0A0J9YX94 578 aa15.43■□□□□ 0.06
VPS28-211ENST00000530790 OPLAHO14841 1288 aa15.43■□□□□ 0.06
VPS28-211ENST00000530790 CYTH3O43739 400 aa15.43■□□□□ 0.06
VPS28-211ENST00000530790 NEFLP07196 543 aa15.43■□□□□ 0.06
VPS28-211ENST00000530790 GHRHRQ02643 423 aa15.43■□□□□ 0.06
VPS28-211ENST00000530790 STXBP2Q15833 593 aa15.43■□□□□ 0.06
VPS28-211ENST00000530790 TMTC2Q8N394 836 aa15.43■□□□□ 0.06
VPS28-211ENST00000530790 SAMD3Q8N6K7 520 aa15.43■□□□□ 0.06
VPS28-211ENST00000530790 MAP3K14Q99558 947 aa15.43■□□□□ 0.06
VPS28-211ENST00000530790 GPHNQ9NQX3 736 aaPredicted RBP15.43■□□□□ 0.06
VPS28-211ENST00000530790 PXMP2Q9NR77 195 aa15.43■□□□□ 0.06
VPS28-211ENST00000530790 MAP3K20Q9NYL2 800 aaKnown RBP15.43■□□□□ 0.06
VPS28-211ENST00000530790 ARIH2O95376 493 aa15.42■□□□□ 0.06
VPS28-211ENST00000530790 TIMP1P01033 207 aa15.42■□□□□ 0.06
VPS28-211ENST00000530790 MYL3P08590 195 aa15.42■□□□□ 0.06
VPS28-211ENST00000530790 PSMC6P62333 389 aa15.42■□□□□ 0.06
VPS28-211ENST00000530790 SHHQ15465 462 aa15.42■□□□□ 0.06
VPS28-211ENST00000530790 C9orf50Q5SZB4 431 aa15.42■□□□□ 0.06
VPS28-211ENST00000530790 SEPT14Q6ZU15 432 aa15.42■□□□□ 0.06
VPS28-211ENST00000530790 SLC43A3Q8NBI5 491 aa15.42■□□□□ 0.06
VPS28-211ENST00000530790 SPZ1Q9BXG8 430 aa15.42■□□□□ 0.06
VPS28-211ENST00000530790 SEC63Q9UGP8 760 aaKnown RBP15.42■□□□□ 0.06
VPS28-211ENST00000530790 CALM1P0DP23 149 aa15.41■□□□□ 0.06
VPS28-211ENST00000530790 CALM2P0DP24 149 aa15.41■□□□□ 0.06
VPS28-211ENST00000530790 CALM3P0DP25 149 aa15.41■□□□□ 0.06
VPS28-211ENST00000530790 HOXA13P31271 388 aaPredicted RBP15.41■□□□□ 0.06
VPS28-211ENST00000530790 LIFRP42702 1097 aa15.41■□□□□ 0.06
VPS28-211ENST00000530790 GNAQP50148 359 aa15.41■□□□□ 0.06
VPS28-211ENST00000530790 PURAQ00577 322 aaKnown RBP15.41■□□□□ 0.06
VPS28-211ENST00000530790 PIBF1Q8WXW3 757 aa15.41■□□□□ 0.06
VPS28-211ENST00000530790 COPS5Q92905 334 aa15.41■□□□□ 0.06
VPS28-211ENST00000530790 RRP36Q96EU6 259 aaKnown RBP15.41■□□□□ 0.06
VPS28-211ENST00000530790 LZTS2Q9BRK4 669 aa15.41■□□□□ 0.06
VPS28-211ENST00000530790 MTG1Q9BT17 334 aaPredicted RBP15.41■□□□□ 0.06
VPS28-211ENST00000530790 PPP1R12CQ9BZL4 782 aa15.41■□□□□ 0.06
VPS28-211ENST00000530790 SLC12A7Q9Y666 1083 aa15.41■□□□□ 0.06
VPS28-211ENST00000530790 GCOM1H8Y6P7 765 aaPredicted RBP15.4■□□□□ 0.06
VPS28-211ENST00000530790 KPNA6O60684 536 aa15.4■□□□□ 0.06
VPS28-211ENST00000530790 EIF3JO75822 258 aaKnown RBP15.4■□□□□ 0.06
VPS28-211ENST00000530790 GH1P01241 217 aa15.4■□□□□ 0.06
VPS28-211ENST00000530790 CD4P01730 458 aa15.4■□□□□ 0.06
VPS28-211ENST00000530790 NR3C2P08235 984 aa15.4■□□□□ 0.06
VPS28-211ENST00000530790 POLR2MP0CAP2 368 aa15.4■□□□□ 0.06
VPS28-211ENST00000530790 MFSD5Q6N075 450 aa15.4■□□□□ 0.06
VPS28-211ENST00000530790 CCDC62Q6P9F0 684 aa15.4■□□□□ 0.06
VPS28-211ENST00000530790 DEFB123Q8N688 67 aa15.4■□□□□ 0.06
VPS28-211ENST00000530790 RNPC3Q96LT9 517 aaKnown RBP15.4■□□□□ 0.06
VPS28-211ENST00000530790 NEK1Q96PY6 1258 aa15.4■□□□□ 0.06
VPS28-211ENST00000530790 PDCD2LQ9BRP1 358 aa15.4■□□□□ 0.06
VPS28-211ENST00000530790 LRRC2Q9BYS8 371 aa15.4■□□□□ 0.06
VPS28-211ENST00000530790 MRVI1Q9Y6F6 885 aa15.4■□□□□ 0.06
VPS28-211ENST00000530790 GRIN2DO15399 1336 aa15.4■□□□□ 0.06
VPS28-211ENST00000530790 A6NJR5 290 aa15.39■□□□□ 0.05
VPS28-211ENST00000530790 B4GALT4O60513 344 aa15.39■□□□□ 0.05
VPS28-211ENST00000530790 PLEKHA8P1O95397 391 aa15.39■□□□□ 0.05
VPS28-211ENST00000530790 RXRAP19793 462 aa15.39■□□□□ 0.05
VPS28-211ENST00000530790 SMARCA1P28370 1054 aa15.39■□□□□ 0.05
VPS28-211ENST00000530790 EPHB4P54760 987 aa15.39■□□□□ 0.05
VPS28-211ENST00000530790 PPIGQ13427 754 aaKnown RBP eCLIP15.39■□□□□ 0.051e-7■□□□□ 10.9
VPS28-211ENST00000530790 COL9A3Q14050 684 aaPredicted RBP15.39■□□□□ 0.05
VPS28-211ENST00000530790 KRT32Q14532 448 aa15.39■□□□□ 0.05
VPS28-211ENST00000530790 LY6KQ17RY6 165 aa15.39■□□□□ 0.05
VPS28-211ENST00000530790 SGMS1Q86VZ5 419 aa15.39■□□□□ 0.05
VPS28-211ENST00000530790 MICU3Q86XE3 530 aa15.39■□□□□ 0.05
VPS28-211ENST00000530790 TMEM199Q8N511 208 aa15.39■□□□□ 0.05
VPS28-211ENST00000530790 ALDH8A1Q9H2A2 487 aaPredicted RBP15.39■□□□□ 0.05
VPS28-211ENST00000530790 HIPK3Q9H422 1215 aa15.39■□□□□ 0.05
VPS28-211ENST00000530790 MMP3P08254 477 aa15.38■□□□□ 0.05
VPS28-211ENST00000530790 MYCLP12524 364 aaPredicted RBP15.38■□□□□ 0.05
VPS28-211ENST00000530790 CCND2P30279 289 aa15.38■□□□□ 0.05
VPS28-211ENST00000530790 ARHGAP1Q07960 439 aa15.38■□□□□ 0.05
VPS28-211ENST00000530790 PGM5Q15124 567 aa15.38■□□□□ 0.05
VPS28-211ENST00000530790 FAM47CQ5HY64 1035 aa15.38■□□□□ 0.05
VPS28-211ENST00000530790 SYNE3Q6ZMZ3 975 aa15.38■□□□□ 0.05
VPS28-211ENST00000530790 FCHSD1Q86WN1 690 aa15.38■□□□□ 0.05
VPS28-211ENST00000530790 RAB11FIP4Q86YS3 637 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms