RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, human

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD7-208	ENST00000528280	SLC27A2	O14975	620 aa		11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	KIAA0355	O15063	1070 aa		11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	CDC45	O75419	566 aa		11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	EIF3J	O75822	258 aa	Known RBP	11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	DDAH1	O94760	285 aa		11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	RAG1	P15918	1043 aa		11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	SMPD1	P17405	629 aa		11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	EDNRB	P24530	442 aa		11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	CDK7	P50613	346 aa		11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	MDM2	Q00987	491 aa	Predicted RBP	11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	KRT32	Q14532	448 aa		11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	TTLL4	Q14679	1199 aa		11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	ZNF697	Q5TEC3	545 aa		11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	ARHGEF16	Q5VV41	709 aa		11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	CREB3L3	Q68CJ9	461 aa		11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	KCNV1	Q6PIU1	500 aa		11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	SLC30A10	Q6XR72	485 aa		11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	NFXL1	Q6ZNB6	911 aa		11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	MB21D2	Q8IYB1	491 aa	Predicted RBP	11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	STAG2	Q8N3U4	1231 aa		11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	RMDN3	Q96TC7	470 aa		11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	CPVL	Q9H3G5	476 aa		11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	PRDM5	Q9NQX1	630 aa	Predicted RBP	11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	PDGFC	Q9NRA1	345 aa		11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	ASTN1	O14525	1302 aa		11.13	□□□□□ -0.63
CHD7-208	ENST00000528280	PRC1	O43663	620 aa		11.13	□□□□□ -0.63
CHD7-208	ENST00000528280	PQBP1	O60828	265 aa	Known RBP	11.13	□□□□□ -0.63
CHD7-208	ENST00000528280	HMGB1	P09429	215 aa	Known RBP	11.13	□□□□□ -0.63
CHD7-208	ENST00000528280	GHRHR	Q02643	423 aa		11.13	□□□□□ -0.63
CHD7-208	ENST00000528280	PPP2R5B	Q15173	497 aa		11.13	□□□□□ -0.63
CHD7-208	ENST00000528280	TSGA10IP	Q3SY00	556 aa		11.13	□□□□□ -0.63
CHD7-208	ENST00000528280	ERICH6B	Q5W0A0	696 aa		11.13	□□□□□ -0.63
CHD7-208	ENST00000528280	CHST3	Q7LGC8	479 aa		11.13	□□□□□ -0.63
CHD7-208	ENST00000528280	FBXO16	Q8IX29	292 aa	Predicted RBP	11.13	□□□□□ -0.63
CHD7-208	ENST00000528280	SYTL5	Q8TDW5	730 aa	Predicted RBP	11.13	□□□□□ -0.63
CHD7-208	ENST00000528280	LENG1	Q96BZ8	264 aa	Predicted RBP	11.13	□□□□□ -0.63
CHD7-208	ENST00000528280	PURB	Q96QR8	312 aa	Known RBP	11.13	□□□□□ -0.63
CHD7-208	ENST00000528280	PDLIM7	Q9NR12	457 aa		11.13	□□□□□ -0.63
CHD7-208	ENST00000528280	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	GCOM1	H8Y6P7	765 aa	Predicted RBP	11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	CTAGE5	O15320	804 aa		11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	ADCY6	O43306	1168 aa		11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	CFB	P00751	764 aa		11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	TIMP1	P01033	207 aa		11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	SUPT20HL2	P0C7V6	817 aa		11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	POLR2M	P0CAP2	368 aa		11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	TXN	P10599	105 aa	Known RBP	11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	HSD17B4	P51659	736 aa		11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	FAAP100	Q0VG06	881 aa		11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	ITGA7	Q13683	1181 aa		11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	STOX1	Q6ZVD7	989 aa		11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	ZNF654	Q8IZM8	581 aa		11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	SLC43A3	Q8NBI5	491 aa		11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	OR6J1	Q8NGC5	347 aa		11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	BAD	Q92934	168 aa		11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	RRP36	Q96EU6	259 aa	Known RBP	11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	NEK1	Q96PY6	1258 aa		11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	TAAR1	Q96RJ0	339 aa		11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	SPZ1	Q9BXG8	430 aa		11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	SEMA6B	Q9H3T3	888 aa		11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	LY9	Q9HBG7	655 aa		11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	SEC63	Q9UGP8	760 aa	Known RBP	11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	SLC12A7	Q9Y666	1083 aa		11.12	□□□□□ -0.63
CHD7-208	ENST00000528280	TRIM43B	A6NCK2	446 aa		11.11	□□□□□ -0.63
CHD7-208	ENST00000528280	MYADML2	A6NDP7	307 aa		11.11	□□□□□ -0.63
CHD7-208	ENST00000528280	NR3C2	P08235	984 aa		11.11	□□□□□ -0.63
CHD7-208	ENST00000528280	TGFB3	P10600	412 aa		11.11	□□□□□ -0.63
CHD7-208	ENST00000528280	ANTXR2	P58335	489 aa		11.11	□□□□□ -0.63
CHD7-208	ENST00000528280	BEX3	Q00994	111 aa		11.11	□□□□□ -0.63
CHD7-208	ENST00000528280	TJAP1	Q5JTD0	557 aa		11.11	□□□□□ -0.63
CHD7-208	ENST00000528280	CXCL17	Q6UXB2	119 aa		11.11	□□□□□ -0.63
CHD7-208	ENST00000528280	DHX32	Q7L7V1	743 aa	Known RBP	11.11	□□□□□ -0.63
CHD7-208	ENST00000528280	HOMER1	Q86YM7	354 aa		11.11	□□□□□ -0.63
CHD7-208	ENST00000528280	TEX2	Q8IWB9	1127 aa		11.11	□□□□□ -0.63
CHD7-208	ENST00000528280	TMEM199	Q8N511	208 aa		11.11	□□□□□ -0.63
CHD7-208	ENST00000528280	TBC1D5	Q92609	795 aa		11.11	□□□□□ -0.63
CHD7-208	ENST00000528280	CUL5	Q93034	780 aa		11.11	□□□□□ -0.63
CHD7-208	ENST00000528280	TRIM43	Q96BQ3	446 aa	Predicted RBP	11.11	□□□□□ -0.63
CHD7-208	ENST00000528280	PIGS	Q96S52	555 aa		11.11	□□□□□ -0.63
CHD7-208	ENST00000528280	MTG1	Q9BT17	334 aa	Predicted RBP	11.11	□□□□□ -0.63
CHD7-208	ENST00000528280	PXMP2	Q9NR77	195 aa		11.11	□□□□□ -0.63
CHD7-208	ENST00000528280	BDP1	A6H8Y1	2624 aa		11.11	□□□□□ -0.63
CHD7-208	ENST00000528280	MCM3AP	O60318	1980 aa		11.1	□□□□□ -0.63
CHD7-208	ENST00000528280		A6NJR5	290 aa		11.1	□□□□□ -0.63
CHD7-208	ENST00000528280	SH2B2	O14492	632 aa	Predicted RBP	11.1	□□□□□ -0.63
CHD7-208	ENST00000528280	EPB41L2	O43491	1005 aa	Known RBP	11.1	□□□□□ -0.63
CHD7-208	ENST00000528280	STAM2	O75886	525 aa		11.1	□□□□□ -0.63
CHD7-208	ENST00000528280	REC8	O95072	547 aa		11.1	□□□□□ -0.63
CHD7-208	ENST00000528280	GH1	P01241	217 aa		11.1	□□□□□ -0.63
CHD7-208	ENST00000528280	FPGS	Q05932	587 aa		11.1	□□□□□ -0.63
CHD7-208	ENST00000528280	PTPN11	Q06124	597 aa	Predicted RBP	11.1	□□□□□ -0.63
CHD7-208	ENST00000528280	LAMC2	Q13753	1193 aa		11.1	□□□□□ -0.63
CHD7-208	ENST00000528280	MFSD5	Q6N075	450 aa		11.1	□□□□□ -0.63
CHD7-208	ENST00000528280	SH3RF1	Q7Z6J0	888 aa		11.1	□□□□□ -0.63
CHD7-208	ENST00000528280	SGMS1	Q86VZ5	419 aa		11.1	□□□□□ -0.63
CHD7-208	ENST00000528280	FANCB	Q8NB91	859 aa		11.1	□□□□□ -0.63
CHD7-208	ENST00000528280	TAF6L	Q9Y6J9	622 aa		11.1	□□□□□ -0.63
CHD7-208	ENST00000528280	CDH23	Q9H251	3354 aa		11.09	□□□□□ -0.63
CHD7-208	ENST00000528280	TMEM265	A0A087WTH1	108 aa		11.09	□□□□□ -0.63
CHD7-208	ENST00000528280	CYTH3	O43739	400 aa		11.09	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms