RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 ZNF658Q5TYW1 1059 aaPredicted RBP23.31■■□□□ 1.32
VPS28-209ENST00000528142 CCDC174Q6PII3 467 aa23.31■■□□□ 1.32
VPS28-209ENST00000528142 APOBEC3FQ8IUX4 373 aaKnown RBP23.31■■□□□ 1.32
VPS28-209ENST00000528142 LPAR1Q92633 364 aa23.31■■□□□ 1.32
VPS28-209ENST00000528142 CALML4Q96GE6 196 aa23.31■■□□□ 1.32
VPS28-209ENST00000528142 PNMA5Q96PV4 448 aa23.31■■□□□ 1.32
VPS28-209ENST00000528142 SPDYE3A6NKU9 549 aa23.3■■□□□ 1.32
VPS28-209ENST00000528142 SEMA3FQ13275 785 aa23.3■■□□□ 1.32
VPS28-209ENST00000528142 KCNB1Q14721 858 aa23.3■■□□□ 1.32
VPS28-209ENST00000528142 DCAF15Q66K64 600 aa23.3■■□□□ 1.32
VPS28-209ENST00000528142 MYH7BA7E2Y1 1941 aa23.3■■□□□ 1.32
VPS28-209ENST00000528142 HOXA13P31271 388 aaPredicted RBP23.29■■□□□ 1.32
VPS28-209ENST00000528142 CIITAP33076 1130 aa23.29■■□□□ 1.32
VPS28-209ENST00000528142 GJA10Q969M2 543 aa23.29■■□□□ 1.32
VPS28-209ENST00000528142 NUDT12Q9BQG2 462 aa23.29■■□□□ 1.32
VPS28-209ENST00000528142 WDR46O15213 610 aaKnown RBP23.29■■□□□ 1.32
VPS28-209ENST00000528142 Q4G0T1 1027 aa23.29■■□□□ 1.32
VPS28-209ENST00000528142 SPATA1Q5VX52 437 aa23.29■■□□□ 1.32
VPS28-209ENST00000528142 C7orf25Q9BPX7 421 aa23.29■■□□□ 1.32
VPS28-209ENST00000528142 BLOC1S4Q9NUP1 217 aa23.29■■□□□ 1.32
VPS28-209ENST00000528142 STK17AQ9UEE5 414 aa23.29■■□□□ 1.32
VPS28-209ENST00000528142 PCDHA12Q9UN75 941 aa23.29■■□□□ 1.32
VPS28-209ENST00000528142 CYP3A4P08684 503 aa23.28■■□□□ 1.32
VPS28-209ENST00000528142 KMT5BQ4FZB7 885 aa23.28■■□□□ 1.32
VPS28-209ENST00000528142 KRT79Q5XKE5 535 aa23.28■■□□□ 1.32
VPS28-209ENST00000528142 TBC1D5Q92609 795 aa23.28■■□□□ 1.32
VPS28-209ENST00000528142 LENG9Q96B70 501 aa23.28■■□□□ 1.32
VPS28-209ENST00000528142 TRIM9Q9C026 710 aa23.28■■□□□ 1.32
VPS28-209ENST00000528142 MRPL11Q9Y3B7 192 aaKnown RBP23.28■■□□□ 1.32
VPS28-209ENST00000528142 ATAD5Q96QE3 1844 aa23.27■■□□□ 1.32
VPS28-209ENST00000528142 SERPINC1P01008 464 aa23.27■■□□□ 1.32
VPS28-209ENST00000528142 UBASH3AP57075 661 aa23.27■■□□□ 1.32
VPS28-209ENST00000528142 TMEM119Q4V9L6 283 aa23.27■■□□□ 1.32
VPS28-209ENST00000528142 KLHL10Q6JEL2 608 aa23.27■■□□□ 1.32
VPS28-209ENST00000528142 LDHDQ86WU2 507 aa23.27■■□□□ 1.32
VPS28-209ENST00000528142 ETNPPLQ8TBG4 499 aa23.27■■□□□ 1.32
VPS28-209ENST00000528142 CACTINQ8WUQ7 758 aaKnown RBP23.27■■□□□ 1.32
VPS28-209ENST00000528142 HOOK2Q96ED9 719 aa23.27■■□□□ 1.32
VPS28-209ENST00000528142 SAMSN1Q9NSI8 373 aaKnown RBP23.27■■□□□ 1.32
VPS28-209ENST00000528142 IMPACTQ9P2X3 320 aa23.27■■□□□ 1.32
VPS28-209ENST00000528142 CBFA2T2O43439 604 aa23.26■■□□□ 1.31
VPS28-209ENST00000528142 MARCH6O60337 910 aa23.26■■□□□ 1.31
VPS28-209ENST00000528142 RHOBTB3O94955 611 aa23.26■■□□□ 1.31
VPS28-209ENST00000528142 PRAMEF18Q5VWM3 479 aa23.26■■□□□ 1.31
VPS28-209ENST00000528142 SCYL3Q8IZE3 742 aa23.26■■□□□ 1.31
VPS28-209ENST00000528142 SNX29Q8TEQ0 813 aa23.26■■□□□ 1.31
VPS28-209ENST00000528142 NAP1L5Q96NT1 182 aaPredicted RBP23.26■■□□□ 1.31
VPS28-209ENST00000528142 PYCARDQ9ULZ3 195 aa23.26■■□□□ 1.31
VPS28-209ENST00000528142 ZNF536O15090 1300 aa23.26■■□□□ 1.31
VPS28-209ENST00000528142 ABCB11O95342 1321 aa23.26■■□□□ 1.31
VPS28-209ENST00000528142 SYNRGQ9UMZ2 1314 aa23.26■■□□□ 1.31
VPS28-209ENST00000528142 FAM86B1E9PN63 330 aa23.26■■□□□ 1.31
VPS28-209ENST00000528142 GCOM1H8Y6P7 765 aaPredicted RBP23.26■■□□□ 1.31
VPS28-209ENST00000528142 TBX3O15119 743 aa23.26■■□□□ 1.31
VPS28-209ENST00000528142 FAM86B2P0C5J1 330 aa23.26■■□□□ 1.31
VPS28-209ENST00000528142 POLR2MP0CAP2 368 aa23.26■■□□□ 1.31
VPS28-209ENST00000528142 STX17P56962 302 aa23.26■■□□□ 1.31
VPS28-209ENST00000528142 LRMPQ12912 555 aa23.26■■□□□ 1.31
VPS28-209ENST00000528142 SLFN12Q8IYM2 578 aa23.26■■□□□ 1.31
VPS28-209ENST00000528142 PRPF38AQ8NAV1 312 aaKnown RBP23.26■■□□□ 1.31
VPS28-209ENST00000528142 KIAA1524Q8TCG1 905 aa23.26■■□□□ 1.31
VPS28-209ENST00000528142 WDR18Q9BV38 432 aa23.26■■□□□ 1.31
VPS28-209ENST00000528142 GGA3Q9NZ52 723 aa23.26■■□□□ 1.31
VPS28-209ENST00000528142 GDAQ9Y2T3 454 aa23.26■■□□□ 1.31
VPS28-209ENST00000528142 AMPD3Q01432 767 aa23.25■■□□□ 1.31
VPS28-209ENST00000528142 PRR16Q569H4 304 aa23.25■■□□□ 1.31
VPS28-209ENST00000528142 HYIQ5T013 277 aa23.25■■□□□ 1.31
VPS28-209ENST00000528142 FILIP1Q7Z7B0 1213 aa23.25■■□□□ 1.31
VPS28-209ENST00000528142 SLF1Q9BQI6 1058 aa23.25■■□□□ 1.31
VPS28-209ENST00000528142 EMILIN3Q9NT22 766 aa23.25■■□□□ 1.31
VPS28-209ENST00000528142 RWDD2AQ9UIY3 292 aa23.25■■□□□ 1.31
VPS28-209ENST00000528142 PPP2R3BQ9Y5P8 575 aa23.25■■□□□ 1.31
VPS28-209ENST00000528142 GRIN3BO60391 1043 aa23.24■■□□□ 1.31
VPS28-209ENST00000528142 CFBP00751 764 aa23.24■■□□□ 1.31
VPS28-209ENST00000528142 ICAM1P05362 532 aa23.24■■□□□ 1.31
VPS28-209ENST00000528142 PRCPP42785 496 aa23.24■■□□□ 1.31
VPS28-209ENST00000528142 DGKZQ13574 1117 aa23.24■■□□□ 1.31
VPS28-209ENST00000528142 ECM1Q16610 540 aa23.24■■□□□ 1.31
VPS28-209ENST00000528142 FCHSD1Q86WN1 690 aa23.24■■□□□ 1.31
VPS28-209ENST00000528142 LRRC8AQ8IWT6 810 aa23.24■■□□□ 1.31
VPS28-209ENST00000528142 CDK5RAP3Q96JB5 506 aa23.24■■□□□ 1.31
VPS28-209ENST00000528142 INTS13Q9NVM9 706 aa23.24■■□□□ 1.31
VPS28-209ENST00000528142 CTNND2Q9UQB3 1225 aa23.24■■□□□ 1.31
VPS28-209ENST00000528142 MTMR2Q13614 643 aa23.24■■□□□ 1.31
VPS28-209ENST00000528142 ARID5BQ14865 1188 aa23.24■■□□□ 1.31
VPS28-209ENST00000528142 HSP90AA4PQ58FG1 418 aa23.24■■□□□ 1.31
VPS28-209ENST00000528142 CDKAL1Q5VV42 579 aa23.24■■□□□ 1.31
VPS28-209ENST00000528142 SAMD1Q6SPF0 538 aaPredicted RBP23.24■■□□□ 1.31
VPS28-209ENST00000528142 SV2BQ7L1I2 683 aa23.24■■□□□ 1.31
VPS28-209ENST00000528142 ADSSL1Q8N142 457 aa23.24■■□□□ 1.31
VPS28-209ENST00000528142 GIMAP8Q8ND71 665 aaPredicted RBP23.24■■□□□ 1.31
VPS28-209ENST00000528142 RAD54LQ92698 747 aa23.24■■□□□ 1.31
VPS28-209ENST00000528142 SLC26A4O43511 780 aa23.23■■□□□ 1.31
VPS28-209ENST00000528142 PTPRAP18433 802 aa23.23■■□□□ 1.31
VPS28-209ENST00000528142 SPIRE1Q08AE8 756 aa23.23■■□□□ 1.31
VPS28-209ENST00000528142 MCM6Q14566 821 aa23.23■■□□□ 1.31
VPS28-209ENST00000528142 TMC6Q7Z403 805 aa23.23■■□□□ 1.31
VPS28-209ENST00000528142 KCNK18Q7Z418 384 aa23.23■■□□□ 1.31
VPS28-209ENST00000528142 LARP4BQ92615 738 aaKnown RBP23.23■■□□□ 1.31
VPS28-209ENST00000528142 ZKSCAN4Q969J2 545 aaPredicted RBP23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms