RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 KRT79Q5XKE5 535 aa23.68■■□□□ 1.38
VPS28-205ENST00000526204 DPP8Q6V1X1 898 aaPredicted RBP23.68■■□□□ 1.38
VPS28-205ENST00000526204 LRRC47Q8N1G4 583 aaKnown RBP23.68■■□□□ 1.38
VPS28-205ENST00000526204 PCMTD1Q96MG8 357 aaPredicted RBP23.68■■□□□ 1.38
VPS28-205ENST00000526204 EIF3CQ99613 913 aaKnown RBP23.68■■□□□ 1.38
VPS28-205ENST00000526204 SEMA6BQ9H3T3 888 aa23.68■■□□□ 1.38
VPS28-205ENST00000526204 C10orf71Q711Q0 1435 aa23.68■■□□□ 1.38
VPS28-205ENST00000526204 MYMKA6NI61 221 aa23.68■■□□□ 1.38
VPS28-205ENST00000526204 AKR1B1P15121 316 aa23.68■■□□□ 1.38
VPS28-205ENST00000526204 ZNF543Q08ER8 600 aa23.68■■□□□ 1.38
VPS28-205ENST00000526204 KIAA1328Q86T90 577 aa23.68■■□□□ 1.38
VPS28-205ENST00000526204 GUF1Q8N442 669 aaKnown RBP23.68■■□□□ 1.38
VPS28-205ENST00000526204 PNMA5Q96PV4 448 aa23.68■■□□□ 1.38
VPS28-205ENST00000526204 NHEJ1Q9H9Q4 299 aaPredicted RBP23.68■■□□□ 1.38
VPS28-205ENST00000526204 SLC39A2Q9NP94 309 aa23.68■■□□□ 1.38
VPS28-205ENST00000526204 SERPINB13Q9UIV8 391 aa23.68■■□□□ 1.38
VPS28-205ENST00000526204 SLC37A4O43826 429 aa23.67■■□□□ 1.38
VPS28-205ENST00000526204 ONECUT3O60422 494 aaPredicted RBP23.67■■□□□ 1.38
VPS28-205ENST00000526204 PSMD2Q13200 908 aa23.67■■□□□ 1.38
VPS28-205ENST00000526204 MCM6Q14566 821 aa23.67■■□□□ 1.38
VPS28-205ENST00000526204 SLC27A3Q5K4L6 730 aa23.67■■□□□ 1.38
VPS28-205ENST00000526204 MEX3CQ5U5Q3 659 aaKnown RBP23.67■■□□□ 1.38
VPS28-205ENST00000526204 TRAPPC11Q7Z392 1133 aa23.67■■□□□ 1.38
VPS28-205ENST00000526204 MAP2K7O14733 419 aa23.66■■□□□ 1.38
VPS28-205ENST00000526204 PPEF1O14829 653 aaPredicted RBP23.66■■□□□ 1.38
VPS28-205ENST00000526204 TDP2O95551 362 aa23.66■■□□□ 1.38
VPS28-205ENST00000526204 LRRC63Q05C16 580 aa23.66■■□□□ 1.38
VPS28-205ENST00000526204 GPATCH4Q5T3I0 446 aaKnown RBP23.66■■□□□ 1.38
VPS28-205ENST00000526204 FOXR2Q6PJQ5 311 aa23.66■■□□□ 1.38
VPS28-205ENST00000526204 RAD54LQ92698 747 aa23.66■■□□□ 1.38
VPS28-205ENST00000526204 EEF2KMTQ96G04 330 aa23.66■■□□□ 1.38
VPS28-205ENST00000526204 GBP3Q9H0R5 595 aa23.66■■□□□ 1.38
VPS28-205ENST00000526204 GPCPD1Q9NPB8 672 aa23.66■■□□□ 1.38
VPS28-205ENST00000526204 ADGRF4Q8IZF3 695 aa23.66■■□□□ 1.38
VPS28-205ENST00000526204 MSL3Q8N5Y2 521 aaKnown RBP23.66■■□□□ 1.38
VPS28-205ENST00000526204 JAKMIP2Q96AA8 810 aa23.66■■□□□ 1.38
VPS28-205ENST00000526204 JMJD4Q9H9V9 463 aa23.66■■□□□ 1.38
VPS28-205ENST00000526204 TRIM10Q9UDY6 481 aa23.66■■□□□ 1.38
VPS28-205ENST00000526204 POLRMTO00411 1230 aaKnown RBP23.65■■□□□ 1.38
VPS28-205ENST00000526204 MRPL12P52815 198 aaKnown RBP23.65■■□□□ 1.38
VPS28-205ENST00000526204 BEND6Q5SZJ8 279 aaPredicted RBP23.65■■□□□ 1.38
VPS28-205ENST00000526204 CCDC84Q86UT8 332 aaPredicted RBP23.65■■□□□ 1.38
VPS28-205ENST00000526204 SNX29Q8TEQ0 813 aa23.65■■□□□ 1.38
VPS28-205ENST00000526204 EDIL3O43854 480 aa23.65■■□□□ 1.38
VPS28-205ENST00000526204 HNRNPH3P31942 346 aaKnown RBP23.65■■□□□ 1.38
VPS28-205ENST00000526204 VWA3BQ502W6 1294 aa23.65■■□□□ 1.38
VPS28-205ENST00000526204 PAPD7Q5XG87 772 aaKnown RBP23.65■■□□□ 1.38
VPS28-205ENST00000526204 HDXQ7Z353 690 aa23.65■■□□□ 1.38
VPS28-205ENST00000526204 CUL5Q93034 780 aa23.65■■□□□ 1.38
VPS28-205ENST00000526204 PNKPQ96T60 521 aa23.65■■□□□ 1.38
VPS28-205ENST00000526204 NAP1L4Q99733 375 aaKnown RBP23.65■■□□□ 1.38
VPS28-205ENST00000526204 ATP6V0A2Q9Y487 856 aa23.65■■□□□ 1.38
VPS28-205ENST00000526204 SAR1BQ9Y6B6 198 aa23.65■■□□□ 1.38
VPS28-205ENST00000526204 FOCADQ5VW36 1801 aa23.65■■□□□ 1.38
VPS28-205ENST00000526204 GCFC2P16383 781 aaKnown RBP23.64■■□□□ 1.37
VPS28-205ENST00000526204 TNNI2P48788 182 aa23.64■■□□□ 1.37
VPS28-205ENST00000526204 CLK2P49760 499 aaKnown RBP23.64■■□□□ 1.37
VPS28-205ENST00000526204 KLK7P49862 253 aa23.64■■□□□ 1.37
VPS28-205ENST00000526204 EIF6P56537 245 aaKnown RBP23.64■■□□□ 1.37
VPS28-205ENST00000526204 DDR1Q08345 913 aa23.64■■□□□ 1.37
VPS28-205ENST00000526204 SEPT2Q15019 361 aa23.64■■□□□ 1.37
VPS28-205ENST00000526204 TMEM119Q4V9L6 283 aa23.64■■□□□ 1.37
VPS28-205ENST00000526204 HPS3Q969F9 1004 aa23.64■■□□□ 1.37
VPS28-205ENST00000526204 TSGA10Q9BZW7 698 aa23.64■■□□□ 1.37
VPS28-205ENST00000526204 DDX4Q9NQI0 724 aaKnown RBP23.64■■□□□ 1.37
VPS28-205ENST00000526204 OAS2P29728 719 aaKnown RBP23.63■■□□□ 1.37
VPS28-205ENST00000526204 GPS2Q13227 327 aa23.63■■□□□ 1.37
VPS28-205ENST00000526204 RPGRIP1Q96KN7 1286 aa23.63■■□□□ 1.37
VPS28-205ENST00000526204 ZC3H12CQ9C0D7 883 aaKnown RBP23.63■■□□□ 1.37
VPS28-205ENST00000526204 NDST4Q9H3R1 872 aa23.63■■□□□ 1.37
VPS28-205ENST00000526204 USP40Q9NVE5 1235 aa23.63■■□□□ 1.37
VPS28-205ENST00000526204 UBR3Q6ZT12 1888 aa23.63■■□□□ 1.37
VPS28-205ENST00000526204 POTEMA6NI47 508 aa23.63■■□□□ 1.37
VPS28-205ENST00000526204 MAN2A1Q16706 1144 aa23.63■■□□□ 1.37
VPS28-205ENST00000526204 DYMQ7RTS9 669 aa23.63■■□□□ 1.37
VPS28-205ENST00000526204 DDX25Q9UHL0 483 aaKnown RBP23.63■■□□□ 1.37
VPS28-205ENST00000526204 PLAGL2Q9UPG8 496 aa23.63■■□□□ 1.37
VPS28-205ENST00000526204 ANO9A1A5B4 782 aa23.62■■□□□ 1.37
VPS28-205ENST00000526204 RIMBP2O15034 1052 aa23.62■■□□□ 1.37
VPS28-205ENST00000526204 POLR3GO15318 223 aaPredicted RBP23.62■■□□□ 1.37
VPS28-205ENST00000526204 HLA-DOAP06340 250 aa23.62■■□□□ 1.37
VPS28-205ENST00000526204 RHOXF2BP0C7M4 288 aa23.62■■□□□ 1.37
VPS28-205ENST00000526204 SEPT12Q8IYM1 358 aa23.62■■□□□ 1.37
VPS28-205ENST00000526204 DDX12PQ92771 950 aa23.62■■□□□ 1.37
VPS28-205ENST00000526204 CCDC42Q96M95 316 aa23.62■■□□□ 1.37
VPS28-205ENST00000526204 RHOXF2Q9BQY4 288 aa23.62■■□□□ 1.37
VPS28-205ENST00000526204 GLT8D2Q9H1C3 349 aa23.62■■□□□ 1.37
VPS28-205ENST00000526204 L1RE1Q9UN81 338 aa23.62■■□□□ 1.37
VPS28-205ENST00000526204 ZBTB5O15062 677 aa23.62■■□□□ 1.37
VPS28-205ENST00000526204 CYP2C19P33261 490 aa23.62■■□□□ 1.37
VPS28-205ENST00000526204 EHHADHQ08426 723 aa23.62■■□□□ 1.37
VPS28-205ENST00000526204 SPA17Q15506 151 aa23.62■■□□□ 1.37
VPS28-205ENST00000526204 TAF3Q5VWG9 929 aa23.62■■□□□ 1.37
VPS28-205ENST00000526204 NCAPH2Q6IBW4 605 aa23.62■■□□□ 1.37
VPS28-205ENST00000526204 WDR93Q6P2C0 686 aa23.62■■□□□ 1.37
VPS28-205ENST00000526204 TSG101Q99816 390 aa23.62■■□□□ 1.37
VPS28-205ENST00000526204 LTBP1Q14766 1721 aa23.62■■□□□ 1.37
VPS28-205ENST00000526204 LRRC37AA6NMS7 1700 aa23.61■■□□□ 1.37
VPS28-205ENST00000526204 CCDC66A2RUB6 948 aa23.61■■□□□ 1.37
VPS28-205ENST00000526204 F8W031 263 aaPredicted RBP23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms