RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 SIT1Q9Y3P8 196 aa6.39□□□□□ -1.39
CD44-217ENST00000525348 KCTD3Q9Y597 815 aa6.39□□□□□ -1.39
CD44-217ENST00000525348 IRS2Q9Y4H2 1338 aa6.39□□□□□ -1.39
CD44-217ENST00000525348 MEFVO15553 781 aaPredicted RBP6.38□□□□□ -1.39
CD44-217ENST00000525348 DLX3O60479 287 aa6.38□□□□□ -1.39
CD44-217ENST00000525348 FPR2P25090 351 aa6.38□□□□□ -1.39
CD44-217ENST00000525348 GTF2F1P35269 517 aaKnown RBP eCLIP6.38□□□□□ -1.39
CD44-217ENST00000525348 KCNJ6P48051 423 aa6.38□□□□□ -1.39
CD44-217ENST00000525348 ACBD5Q5T8D3 534 aaPredicted RBP6.38□□□□□ -1.39
CD44-217ENST00000525348 E4F1Q66K89 784 aaPredicted RBP6.38□□□□□ -1.39
CD44-217ENST00000525348 OLFML2BQ68BL8 750 aa6.38□□□□□ -1.39
CD44-217ENST00000525348 WWC2Q6AWC2 1192 aa6.38□□□□□ -1.39
CD44-217ENST00000525348 SPATC1Q76KD6 591 aa6.38□□□□□ -1.39
CD44-217ENST00000525348 PPIL6Q8IXY8 311 aa6.38□□□□□ -1.39
CD44-217ENST00000525348 RCBTB1Q8NDN9 531 aa6.38□□□□□ -1.39
CD44-217ENST00000525348 DIO2Q92813 273 aa6.38□□□□□ -1.39
CD44-217ENST00000525348 SIGLEC10Q96LC7 697 aa6.38□□□□□ -1.39
CD44-217ENST00000525348 IER2Q9BTL4 223 aa6.38□□□□□ -1.39
CD44-217ENST00000525348 IRF2BPLQ9H1B7 796 aa6.38□□□□□ -1.39
CD44-217ENST00000525348 BTG4Q9NY30 223 aa6.38□□□□□ -1.39
CD44-217ENST00000525348 CNOT6Q9ULM6 557 aaKnown RBP6.38□□□□□ -1.39
CD44-217ENST00000525348 NUAK1O60285 661 aa6.37□□□□□ -1.39
CD44-217ENST00000525348 CPP00450 1065 aa6.37□□□□□ -1.39
CD44-217ENST00000525348 NTRK1P04629 796 aa6.37□□□□□ -1.39
CD44-217ENST00000525348 IGFBP6P24592 240 aaPredicted RBP6.37□□□□□ -1.39
CD44-217ENST00000525348 SERINC3Q13530 473 aa6.37□□□□□ -1.39
CD44-217ENST00000525348 YOD1Q5VVQ6 348 aaPredicted RBP6.37□□□□□ -1.39
CD44-217ENST00000525348 NETO2Q8NC67 525 aa6.37□□□□□ -1.39
CD44-217ENST00000525348 ST13P5Q8NFI4 369 aaPredicted RBP6.37□□□□□ -1.39
CD44-217ENST00000525348 IRAK3Q9Y616 596 aa6.37□□□□□ -1.39
CD44-217ENST00000525348 AGRPO00253 132 aa6.36□□□□□ -1.39
CD44-217ENST00000525348 ATF2P15336 505 aa6.36□□□□□ -1.39
CD44-217ENST00000525348 BCL6P41182 706 aa6.36□□□□□ -1.39
CD44-217ENST00000525348 MC3RP41968 323 aa6.36□□□□□ -1.39
CD44-217ENST00000525348 MAP4K2Q12851 820 aa6.36□□□□□ -1.39
CD44-217ENST00000525348 KCNAB2Q13303 367 aa6.36□□□□□ -1.39
CD44-217ENST00000525348 CIAPIN1Q6FI81 312 aa6.36□□□□□ -1.39
CD44-217ENST00000525348 Q8N1Y9 231 aa6.36□□□□□ -1.39
CD44-217ENST00000525348 OSBP2Q969R2 916 aa6.36□□□□□ -1.39
CD44-217ENST00000525348 TSPAN17Q96FV3 270 aa6.36□□□□□ -1.39
CD44-217ENST00000525348 SGSM3Q96HU1 749 aa6.36□□□□□ -1.39
CD44-217ENST00000525348 CCDC140Q96MF4 163 aa6.36□□□□□ -1.39
CD44-217ENST00000525348 C22orf46C9J442 243 aa6.35□□□□□ -1.39
CD44-217ENST00000525348 BUB1BO60566 1050 aaPredicted RBP6.35□□□□□ -1.39
CD44-217ENST00000525348 MSCO60682 206 aa6.35□□□□□ -1.39
CD44-217ENST00000525348 ASGR2P07307 311 aa6.35□□□□□ -1.39
CD44-217ENST00000525348 ZSCAN22P10073 491 aaPredicted RBP6.35□□□□□ -1.39
CD44-217ENST00000525348 LTBRP36941 435 aa6.35□□□□□ -1.39
CD44-217ENST00000525348 LIMS1P48059 325 aa6.35□□□□□ -1.39
CD44-217ENST00000525348 RPL11P62913 178 aaKnown RBP6.35□□□□□ -1.39
CD44-217ENST00000525348 RBL2Q08999 1139 aa6.35□□□□□ -1.39
CD44-217ENST00000525348 NTRK3Q16288 839 aa6.35□□□□□ -1.39
CD44-217ENST00000525348 IQCEQ6IPM2 695 aa6.35□□□□□ -1.39
CD44-217ENST00000525348 CABP7Q86V35 215 aa6.35□□□□□ -1.39
CD44-217ENST00000525348 FAM129CQ86XR2 697 aa6.35□□□□□ -1.39
CD44-217ENST00000525348 USP33Q8TEY7 942 aa6.35□□□□□ -1.39
CD44-217ENST00000525348 DACT3Q96B18 629 aaPredicted RBP6.35□□□□□ -1.39
CD44-217ENST00000525348 AARSD1Q9BTE6 412 aaKnown RBP6.35□□□□□ -1.39
CD44-217ENST00000525348 DBR1Q9UK59 544 aaKnown RBP6.35□□□□□ -1.39
CD44-217ENST00000525348 TIMM13Q9Y5L4 95 aaPredicted RBP6.35□□□□□ -1.39
CD44-217ENST00000525348 NPFFR2Q9Y5X5 522 aa6.35□□□□□ -1.39
CD44-217ENST00000525348 CCDC85CA6NKD9 419 aa6.34□□□□□ -1.39
CD44-217ENST00000525348 BTBD11A6QL63 1104 aa6.34□□□□□ -1.39
CD44-217ENST00000525348 PDPK1O15530 556 aa6.34□□□□□ -1.39
CD44-217ENST00000525348 SGSM2O43147 1006 aa6.34□□□□□ -1.39
CD44-217ENST00000525348 PRODHO43272 600 aa6.34□□□□□ -1.39
CD44-217ENST00000525348 ADCY3O60266 1144 aa6.34□□□□□ -1.39
CD44-217ENST00000525348 DIAPH1O60610 1272 aaKnown RBP6.34□□□□□ -1.39
CD44-217ENST00000525348 PMLP29590 882 aa6.34□□□□□ -1.39
CD44-217ENST00000525348 RASGRF1Q13972 1273 aa6.34□□□□□ -1.39
CD44-217ENST00000525348 HSP90AA2PQ14568 343 aaPredicted RBP6.34□□□□□ -1.39
CD44-217ENST00000525348 RASA3Q14644 834 aa6.34□□□□□ -1.39
CD44-217ENST00000525348 NBPF6Q5VWK0 638 aa6.34□□□□□ -1.39
CD44-217ENST00000525348 AMIGO3Q86WK7 504 aa6.34□□□□□ -1.39
CD44-217ENST00000525348 ZSCAN18Q8TBC5 510 aaPredicted RBP6.34□□□□□ -1.39
CD44-217ENST00000525348 KCTD13Q8WZ19 329 aa6.34□□□□□ -1.39
CD44-217ENST00000525348 ALG3Q92685 438 aa6.34□□□□□ -1.39
CD44-217ENST00000525348 ARMC5Q96C12 935 aa6.34□□□□□ -1.39
CD44-217ENST00000525348 NBPF4Q96M43 638 aa6.34□□□□□ -1.39
CD44-217ENST00000525348 PPP1R1BQ9UD71 204 aaPredicted RBP6.34□□□□□ -1.39
CD44-217ENST00000525348 PFDN2Q9UHV9 154 aa6.34□□□□□ -1.39
CD44-217ENST00000525348 PCDHA2Q9Y5H9 948 aa6.34□□□□□ -1.39
CD44-217ENST00000525348 X6R8D5 127 aa6.34□□□□□ -1.39
CD44-217ENST00000525348 ADAMTS20P59510 1910 aa6.33□□□□□ -1.4
CD44-217ENST00000525348 BLACEA4D250 179 aa6.33□□□□□ -1.4
CD44-217ENST00000525348 FAM221BA6H8Z2 402 aa6.33□□□□□ -1.4
CD44-217ENST00000525348 IQCA1LA6NCM1 817 aa6.33□□□□□ -1.4
CD44-217ENST00000525348 PLA2G1BP04054 148 aaKnown RBP6.33□□□□□ -1.4
CD44-217ENST00000525348 FGFR1P11362 822 aa6.33□□□□□ -1.4
CD44-217ENST00000525348 PABPC1P11940 636 aaKnown RBP6.33□□□□□ -1.4
CD44-217ENST00000525348 KRTAP19-4Q3LI73 84 aa6.33□□□□□ -1.4
CD44-217ENST00000525348 ZNF385BQ569K4 471 aa6.33□□□□□ -1.4
CD44-217ENST00000525348 FOXB2Q5VYV0 432 aa6.33□□□□□ -1.4
CD44-217ENST00000525348 CEP68Q76N32 757 aa6.33□□□□□ -1.4
CD44-217ENST00000525348 PEX11GQ96HA9 241 aa6.33□□□□□ -1.4
CD44-217ENST00000525348 SPATA9Q9BWV2 254 aa6.33□□□□□ -1.4
CD44-217ENST00000525348 CCDC113Q9H0I3 377 aa6.33□□□□□ -1.4
CD44-217ENST00000525348 CDIP1Q9H305 208 aa6.33□□□□□ -1.4
CD44-217ENST00000525348 SIRPGQ9P1W8 387 aa6.33□□□□□ -1.4
CD44-217ENST00000525348 U2SURPO15042 1029 aaKnown RBP6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms