RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293	HOXC12	P31275	282 aa		3.8	□□□□□ -1.8
CD44-216	ENST00000525293	ECI1	P42126	302 aa		3.8	□□□□□ -1.8
CD44-216	ENST00000525293	TARBP2	Q15633	366 aa	Known RBP	3.8	□□□□□ -1.8
CD44-216	ENST00000525293	SF1	Q15637	639 aa	Known RBP	3.8	□□□□□ -1.8
CD44-216	ENST00000525293	INF2	Q27J81	1249 aa		3.8	□□□□□ -1.8
CD44-216	ENST00000525293	ZNF227	Q86WZ6	799 aa		3.8	□□□□□ -1.8
CD44-216	ENST00000525293	MARCH10	Q8NA82	808 aa	Predicted RBP	3.8	□□□□□ -1.8
CD44-216	ENST00000525293	SLC43A3	Q8NBI5	491 aa		3.8	□□□□□ -1.8
CD44-216	ENST00000525293	NETO2	Q8NC67	525 aa		3.8	□□□□□ -1.8
CD44-216	ENST00000525293	ALG3	Q92685	438 aa		3.8	□□□□□ -1.8
CD44-216	ENST00000525293	DPF3	Q92784	378 aa		3.8	□□□□□ -1.8
CD44-216	ENST00000525293	PEX11G	Q96HA9	241 aa		3.8	□□□□□ -1.8
CD44-216	ENST00000525293	PARD6A	Q9NPB6	346 aa		3.8	□□□□□ -1.8
CD44-216	ENST00000525293	ST7	Q9NRC1	585 aa		3.8	□□□□□ -1.8
CD44-216	ENST00000525293	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	3.8	□□□□□ -1.8
CD44-216	ENST00000525293	MARCH2	Q9P0N8	246 aa		3.8	□□□□□ -1.8
CD44-216	ENST00000525293	NUDT5	Q9UKK9	219 aa		3.8	□□□□□ -1.8
CD44-216	ENST00000525293	ASGR2	P07307	311 aa		3.79	□□□□□ -1.8
CD44-216	ENST00000525293	HOXA5	P20719	270 aa		3.79	□□□□□ -1.8
CD44-216	ENST00000525293	MC3R	P41968	323 aa		3.79	□□□□□ -1.8
CD44-216	ENST00000525293	KCNJ6	P48051	423 aa		3.79	□□□□□ -1.8
CD44-216	ENST00000525293	FOXO4	P98177	505 aa		3.79	□□□□□ -1.8
CD44-216	ENST00000525293	WWC2	Q6AWC2	1192 aa		3.79	□□□□□ -1.8
CD44-216	ENST00000525293	LILRA6	Q6PI73	481 aa		3.79	□□□□□ -1.8
CD44-216	ENST00000525293	ANKS3	Q6ZW76	656 aa		3.79	□□□□□ -1.8
CD44-216	ENST00000525293	EEPD1	Q7L9B9	569 aa		3.79	□□□□□ -1.8
CD44-216	ENST00000525293	TEX2	Q8IWB9	1127 aa		3.79	□□□□□ -1.8
CD44-216	ENST00000525293	NLGN1	Q8N2Q7	840 aa		3.79	□□□□□ -1.8
CD44-216	ENST00000525293	CELF2-AS1	Q8N7Q2	184 aa		3.79	□□□□□ -1.8
CD44-216	ENST00000525293	NPLOC4	Q8TAT6	608 aa		3.79	□□□□□ -1.8
CD44-216	ENST00000525293	PLEKHO2	Q8TD55	490 aa		3.79	□□□□□ -1.8
CD44-216	ENST00000525293	HNRNPLL	Q8WVV9	542 aa	Known RBP	3.79	□□□□□ -1.8
CD44-216	ENST00000525293	TSPAN17	Q96FV3	270 aa		3.79	□□□□□ -1.8
CD44-216	ENST00000525293	KCNC2	Q96PR1	638 aa		3.79	□□□□□ -1.8
CD44-216	ENST00000525293	IGSF5	Q9NSI5	407 aa		3.79	□□□□□ -1.8
CD44-216	ENST00000525293	PODXL2	Q9NZ53	605 aa		3.79	□□□□□ -1.8
CD44-216	ENST00000525293	TMEFF2	Q9UIK5	374 aa	Predicted RBP	3.79	□□□□□ -1.8
CD44-216	ENST00000525293	FAN1	Q9Y2M0	1017 aa		3.79	□□□□□ -1.8
CD44-216	ENST00000525293	SIT1	Q9Y3P8	196 aa		3.79	□□□□□ -1.8
CD44-216	ENST00000525293	C22orf46	C9J442	243 aa		3.78	□□□□□ -1.8
CD44-216	ENST00000525293	ARNTL	O00327	626 aa		3.78	□□□□□ -1.8
CD44-216	ENST00000525293	MEFV	O15553	781 aa	Predicted RBP	3.78	□□□□□ -1.8
CD44-216	ENST00000525293	SASH1	O94885	1247 aa		3.78	□□□□□ -1.8
CD44-216	ENST00000525293	ZBTB7A	O95365	584 aa		3.78	□□□□□ -1.8
CD44-216	ENST00000525293	CP	P00450	1065 aa		3.78	□□□□□ -1.8
CD44-216	ENST00000525293	PML	P29590	882 aa		3.78	□□□□□ -1.8
CD44-216	ENST00000525293	SLC9A5	Q14940	896 aa		3.78	□□□□□ -1.8
CD44-216	ENST00000525293	PRSS53	Q2L4Q9	553 aa		3.78	□□□□□ -1.8
CD44-216	ENST00000525293	IQCE	Q6IPM2	695 aa		3.78	□□□□□ -1.8
CD44-216	ENST00000525293	CEP68	Q76N32	757 aa		3.78	□□□□□ -1.8
CD44-216	ENST00000525293	CCDC103	Q8IW40	242 aa		3.78	□□□□□ -1.8
CD44-216	ENST00000525293	KREMEN2	Q8NCW0	462 aa		3.78	□□□□□ -1.8
CD44-216	ENST00000525293	DIO2	Q92813	273 aa		3.78	□□□□□ -1.8
CD44-216	ENST00000525293	C20orf173	Q96LM9	149 aa		3.78	□□□□□ -1.8
CD44-216	ENST00000525293	CCDC140	Q96MF4	163 aa		3.78	□□□□□ -1.8
CD44-216	ENST00000525293	GML	Q99445	158 aa		3.78	□□□□□ -1.8
CD44-216	ENST00000525293	RNF38	Q9H0F5	515 aa		3.78	□□□□□ -1.8
CD44-216	ENST00000525293	TIMM13	Q9Y5L4	95 aa	Predicted RBP	3.78	□□□□□ -1.8
CD44-216	ENST00000525293	AGRP	O00253	132 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	FFAR3	O14843	346 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	PLA2G1B	P04054	148 aa	Known RBP	3.77	□□□□□ -1.81
CD44-216	ENST00000525293	SCG5	P05408	212 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	FPR2	P25090	351 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	BCL6	P41182	706 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	GRIA2	P42262	883 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	GFRA1	P56159	465 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	CTSW	P56202	376 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	RPL11	P62913	178 aa	Known RBP	3.77	□□□□□ -1.81
CD44-216	ENST00000525293	PPP2R2A	P63151	447 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	SLC10A6	Q3KNW5	377 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	LCE5A	Q5TCM9	118 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	E4F1	Q66K89	784 aa	Predicted RBP	3.77	□□□□□ -1.81
CD44-216	ENST00000525293	PPIL6	Q8IXY8	311 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	ZDHHC14	Q8IZN3	488 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	ADGRG2	Q8IZP9	1017 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	LINC01356	Q8N9X3	169 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	TP53I13	Q8NBR0	393 aa	Predicted RBP	3.77	□□□□□ -1.81
CD44-216	ENST00000525293	TMEM145	Q8NBT3	493 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	SYT8	Q8NBV8	401 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	RCBTB1	Q8NDN9	531 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	FEZF2	Q8TBJ5	459 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	FNIP1	Q8TF40	1166 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	TRMT2B	Q96GJ1	504 aa	Known RBP	3.77	□□□□□ -1.81
CD44-216	ENST00000525293	CHAMP1	Q96JM3	812 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	RAPGEFL1	Q9UHV5	662 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	PCDHA2	Q9Y5H9	948 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293	PMF1-BGLAP	U3KQ54	211 aa		3.77	□□□□□ -1.81
CD44-216	ENST00000525293		A0A0G2JLL6	359 aa	Predicted RBP	3.76	□□□□□ -1.81
CD44-216	ENST00000525293		A0A1B0GTL3	188 aa		3.76	□□□□□ -1.81
CD44-216	ENST00000525293		A0A1W2PQU0	124 aa		3.76	□□□□□ -1.81
CD44-216	ENST00000525293	OTOL1	A6NHN0	477 aa	Predicted RBP	3.76	□□□□□ -1.81
CD44-216	ENST00000525293	SGSM2	O43147	1006 aa		3.76	□□□□□ -1.81
CD44-216	ENST00000525293	KLF4	O43474	513 aa		3.76	□□□□□ -1.81
CD44-216	ENST00000525293	MYO1B	O43795	1136 aa		3.76	□□□□□ -1.81
CD44-216	ENST00000525293	LCP1	P13796	627 aa		3.76	□□□□□ -1.81
CD44-216	ENST00000525293	LTBR	P36941	435 aa		3.76	□□□□□ -1.81
CD44-216	ENST00000525293	RBM10	P98175	930 aa	Known RBP	3.76	□□□□□ -1.81
CD44-216	ENST00000525293	CACNB2	Q08289	660 aa	Predicted RBP	3.76	□□□□□ -1.81
CD44-216	ENST00000525293	DDR2	Q16832	855 aa		3.76	□□□□□ -1.81
CD44-216	ENST00000525293	DENND5A	Q6IQ26	1287 aa		3.76	□□□□□ -1.81

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