RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 ASIC1P78348 528 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 ICA1Q05084 483 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 CDKAL1Q5VV42 579 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 FUKQ8N0W3 1084 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 EHBP1Q8NDI1 1231 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 SNX12Q9UMY4 172 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 JAG2Q9Y219 1238 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 XDHP47989 1333 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 GCOM1H8Y6P7 765 aaPredicted RBP11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 MYZAPP0CAP1 466 aa11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 MAGOHP61326 146 aaKnown RBP11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 FAM47EQ6ZV65 393 aa11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 CREG2Q8IUH2 290 aa11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 IFT20Q8IY31 132 aa11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 MAGOHBQ96A72 148 aaKnown RBP11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 LZTS2Q9BRK4 669 aa11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 CWC25Q9NXE8 425 aaPredicted RBP11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 TMOD4Q9NZQ9 345 aa11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 VEGFAP15692 232 aaPredicted RBP11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 COPB2P35606 906 aa11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 ZBED6P86452 979 aa11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 CCDC38Q502W7 563 aa11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 DYMQ7RTS9 669 aa11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 GPKOWQ92917 476 aaPredicted RBP eCLIP11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 TBC1D7Q9P0N9 293 aa11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 MYH10P35580 1976 aa11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 SHOX2O60902 331 aaPredicted RBP11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 PDHA1P08559 390 aa11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 HSPA2P54652 639 aa11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 SPAG1Q07617 926 aa11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 LRRC41Q15345 812 aa11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 SLC5A9Q2M3M2 681 aa11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 ELAC2Q9BQ52 826 aaKnown RBP11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 OSBPL7Q9BZF2 842 aa11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 SLC39A2Q9NP94 309 aa11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 PCDHA13Q9Y5I0 950 aa11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 MYO5BQ9ULV0 1848 aa11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 TNRQ92752 1358 aa11.11□□□□□ -0.63
PDGFRB-207ENST00000520579 SMAPO00193 183 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 KCNK3O14649 394 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 PBX1P40424 430 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 SLC1A4P43007 532 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 MCAMP43121 646 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 PHKA1P46020 1223 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 MPP3Q13368 585 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 NTRK3Q16288 839 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 THEMISQ8N1K5 641 aaPredicted RBP11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 C17orf50Q8WW18 174 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 CASKIN2Q8WXE0 1202 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 WASF1Q92558 559 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 STRN4Q9NRL3 753 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 RGL1Q9NZL6 768 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 OVOS2A0A0J9YW53 1432 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 OVOS2Q6IE36 1432 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 ZNF263O14978 683 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 EPHB6O15197 1021 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 CTNND1O60716 968 aaKnown RBP11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 IMPDH2P12268 514 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 CNGA1P29973 690 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 KRT2P35908 639 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 LRRC14Q15048 493 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 FAM228AQ86W67 206 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 CCDC63Q8NA47 563 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 TBC1D5Q92609 795 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 SEC16BQ96JE7 1060 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 CNOT6LQ96LI5 555 aaKnown RBP11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 SH3GL2Q99962 352 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 ARPC5LQ9BPX5 153 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 TRAIPQ9BWF2 469 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 MYO1AQ9UBC5 1043 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 SALL4Q9UJQ4 1053 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 DLC1Q96QB1 1528 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 ADAMTS3O15072 1205 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 XBP1P17861 261 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 UBA7P41226 1012 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 SCTRP47872 440 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 KIF11P52732 1056 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 CABP4P57796 275 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 TUBB4BP68371 445 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 PDE4DQ08499 809 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 PAK2Q13177 524 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 ARHGAP22Q7Z5H3 698 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 SLC17A8Q8NDX2 589 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 TAF4BQ92750 862 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 TSC22D3Q99576 134 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 EPAS1Q99814 870 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 DDX47Q9H0S4 455 aaKnown RBP11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 NOD2Q9HC29 1040 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 RABL2BQ9UNT1 228 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 GMNCA6NCL1 334 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 A8MUI8 341 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 PSMA7O14818 248 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 FCER1AP12319 257 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 SMTNP53814 917 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 ZNF654Q8IZM8 581 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 FAM81AQ8TBF8 368 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 CABLES1Q8TDN4 633 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 IGDCC4Q8TDY8 1250 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 EXOC1Q9NV70 894 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms