RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 KCNQ5Q9NR82 932 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 TLR7Q9NYK1 1049 aaKnown RBP3.35□□□□□ -1.87
MCF2-208ENST00000519895 NEUROG3Q9Y4Z2 214 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 SUPT16HQ9Y5B9 1047 aaKnown RBP3.35□□□□□ -1.87
MCF2-208ENST00000519895 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP3.35□□□□□ -1.87
MCF2-208ENST00000519895 MORC2Q9Y6X9 1032 aaPredicted RBP3.35□□□□□ -1.87
MCF2-208ENST00000519895 PTPRZ1P23471 2315 aaPredicted RBP3.35□□□□□ -1.87
MCF2-208ENST00000519895 DCDC2BA2VCK2 349 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 LOC730098B7Z3J9 87 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 DPYSL4O14531 572 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 PLIN1O60240 522 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 CALM1P0DP23 149 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 CALM2P0DP24 149 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 CALM3P0DP25 149 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 BCRP11274 1271 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 CHMLP26374 656 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 SHMT1P34896 483 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 PRKCZQ05513 592 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 TBC1D10BQ4KMP7 808 aaPredicted RBP3.34□□□□□ -1.87
MCF2-208ENST00000519895 ANKRD45Q5TZF3 282 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 CTR9Q6PD62 1173 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 IFNL3Q8IZI9 196 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 SUMF1Q8NBK3 374 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 ZNF280CQ8ND82 737 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 MTMR8Q96EF0 704 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 TMEM87BQ96K49 555 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 ADAM33Q9BZ11 813 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 CCDC8Q9H0W5 538 aaPredicted RBP3.34□□□□□ -1.87
MCF2-208ENST00000519895 NKX2-4Q9H2Z4 354 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 ARHGEF10LQ9HCE6 1279 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 CABP5Q9NP86 173 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 RABGAP1Q9Y3P9 1069 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 IVNS1ABPQ9Y6Y0 642 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 PLXNB2O15031 1838 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 MYH4Q9Y623 1939 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 POM121CA8CG34 1229 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 USP17L15C9J2P7 530 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 USP17L13C9JLJ4 530 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 USP17L11C9JVI0 530 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 USP17L18D6R9N7 530 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 USP17L22D6RA61 530 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 USP17L17D6RBQ6 530 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 USP17L19D6RCP7 530 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 USP17L20D6RJB6 530 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 GPAA1O43292 621 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 STRNO43815 780 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 DDAH1O94760 285 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 CTGFP29279 349 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 LIFRP42702 1097 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 BACE1P56817 501 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 USP17L24Q0WX57 530 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 FAM110CQ1W6H9 321 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 RTL5Q5HYW3 569 aaPredicted RBP3.34□□□□□ -1.87
MCF2-208ENST00000519895 OLFML2BQ68BL8 750 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 GPAT2Q6NUI2 795 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 PPP1R18Q6NYC8 613 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 XRRA1Q6P2D8 792 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 SND1Q7KZF4 910 aaKnown RBP eCLIP3.34□□□□□ -1.87
MCF2-208ENST00000519895 TICAM1Q8IUC6 712 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 ZNF843Q8N446 348 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 KCNG4Q8TDN1 519 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 SH3RF3Q8TEJ3 882 aaPredicted RBP3.34□□□□□ -1.87
MCF2-208ENST00000519895 TDRD3Q9H7E2 651 aaKnown RBP3.34□□□□□ -1.87
MCF2-208ENST00000519895 DDX4Q9NQI0 724 aaKnown RBP3.34□□□□□ -1.87
MCF2-208ENST00000519895 PICK1Q9NRD5 415 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 EMILIN3Q9NT22 766 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 FEM1BQ9UK73 627 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 ZBTB21Q9ULJ3 1066 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 GNEQ9Y223 722 aaKnown RBP3.34□□□□□ -1.87
MCF2-208ENST00000519895 PCDHGC5Q9Y5F6 944 aa3.34□□□□□ -1.87
MCF2-208ENST00000519895 GOLIM4O00461 696 aa3.34□□□□□ -1.88
MCF2-208ENST00000519895 REC8O95072 547 aa3.34□□□□□ -1.88
MCF2-208ENST00000519895 CAPNS1P04632 268 aa3.34□□□□□ -1.88
MCF2-208ENST00000519895 ERCC3P19447 782 aa3.34□□□□□ -1.88
MCF2-208ENST00000519895 MAPK4P31152 587 aa3.34□□□□□ -1.88
MCF2-208ENST00000519895 GNAQP50148 359 aa3.34□□□□□ -1.88
MCF2-208ENST00000519895 GRIK5Q16478 980 aa3.34□□□□□ -1.88
MCF2-208ENST00000519895 GPATCH4Q5T3I0 446 aaKnown RBP3.34□□□□□ -1.88
MCF2-208ENST00000519895 RNF20Q5VTR2 975 aa3.34□□□□□ -1.88
MCF2-208ENST00000519895 SGMS1Q86VZ5 419 aa3.34□□□□□ -1.88
MCF2-208ENST00000519895 SOCS4Q8WXH5 440 aa3.34□□□□□ -1.88
MCF2-208ENST00000519895 USP6NLQ92738 828 aa3.34□□□□□ -1.88
MCF2-208ENST00000519895 OSBP2Q969R2 916 aa3.34□□□□□ -1.88
MCF2-208ENST00000519895 XPO5Q9HAV4 1204 aaKnown RBP eCLIP3.34□□□□□ -1.88
MCF2-208ENST00000519895 HOXC10Q9NYD6 342 aa3.34□□□□□ -1.88
MCF2-208ENST00000519895 KIAA1522Q9P206 1035 aaPredicted RBP3.34□□□□□ -1.88
MCF2-208ENST00000519895 FBXO40Q9UH90 709 aa3.34□□□□□ -1.88
MCF2-208ENST00000519895 Q9Y3F1 56 aa3.34□□□□□ -1.88
MCF2-208ENST00000519895 FRMPD4Q14CM0 1322 aa3.34□□□□□ -1.88
MCF2-208ENST00000519895 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP3.33□□□□□ -1.88
MCF2-208ENST00000519895 CAPN9O14815 690 aa3.33□□□□□ -1.88
MCF2-208ENST00000519895 FOXP2O15409 715 aa3.33□□□□□ -1.88
MCF2-208ENST00000519895 SLC26A4O43511 780 aa3.33□□□□□ -1.88
MCF2-208ENST00000519895 TOP1P11387 765 aaKnown RBP3.33□□□□□ -1.88
MCF2-208ENST00000519895 GUCY1A2P33402 732 aa3.33□□□□□ -1.88
MCF2-208ENST00000519895 USP5P45974 858 aa3.33□□□□□ -1.88
MCF2-208ENST00000519895 CDK8P49336 464 aa3.33□□□□□ -1.88
MCF2-208ENST00000519895 PSEN1P49768 467 aa3.33□□□□□ -1.88
MCF2-208ENST00000519895 PPARAQ07869 468 aa3.33□□□□□ -1.88
MCF2-208ENST00000519895 CHAF1AQ13111 956 aaPredicted RBP3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms