RNA–Protein interactions for RNA: ENST00000514660.1

NEDD9-215, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 473 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-215ENST00000514660 VTA1Q9NP79 307 aa12.63□□□□□ -0.39
NEDD9-215ENST00000514660 CLDND1Q9NY35 253 aa12.63□□□□□ -0.39
NEDD9-215ENST00000514660 FEM1BQ9UK73 627 aa12.63□□□□□ -0.39
NEDD9-215ENST00000514660 COG6Q9Y2V7 657 aa12.63□□□□□ -0.39
NEDD9-215ENST00000514660 FAM186AA6NE01 2351 aa12.63□□□□□ -0.39
NEDD9-215ENST00000514660 RIF1Q5UIP0 2472 aaKnown RBP12.63□□□□□ -0.39
NEDD9-215ENST00000514660 ALAS1P13196 640 aa12.62□□□□□ -0.39
NEDD9-215ENST00000514660 HTRA4P83105 476 aaPredicted RBP12.62□□□□□ -0.39
NEDD9-215ENST00000514660 BFSP2Q13515 415 aa12.62□□□□□ -0.39
NEDD9-215ENST00000514660 PTGISQ16647 500 aa12.62□□□□□ -0.39
NEDD9-215ENST00000514660 TRIM71Q2Q1W2 868 aaKnown RBP12.62□□□□□ -0.39
NEDD9-215ENST00000514660 LRRC8DQ7L1W4 858 aa12.62□□□□□ -0.39
NEDD9-215ENST00000514660 OR6J1Q8NGC5 347 aa12.62□□□□□ -0.39
NEDD9-215ENST00000514660 MKL1Q969V6 931 aa12.62□□□□□ -0.39
NEDD9-215ENST00000514660 CEP95Q96GE4 821 aa12.62□□□□□ -0.39
NEDD9-215ENST00000514660 IL1RAPL2Q9NP60 686 aa12.62□□□□□ -0.39
NEDD9-215ENST00000514660 EXOC6BQ9Y2D4 811 aa12.62□□□□□ -0.39
NEDD9-215ENST00000514660 MYH7P12883 1935 aa12.62□□□□□ -0.39
NEDD9-215ENST00000514660 ABHD14A-ACY1A0A1B0GW23 586 aa12.61□□□□□ -0.39
NEDD9-215ENST00000514660 TMEM232C9JQI7 657 aa12.61□□□□□ -0.39
NEDD9-215ENST00000514660 H3BNC9 293 aa12.61□□□□□ -0.39
NEDD9-215ENST00000514660 LINC01565O15544 149 aa12.61□□□□□ -0.39
NEDD9-215ENST00000514660 TBX10O75333 385 aa12.61□□□□□ -0.39
NEDD9-215ENST00000514660 ARIH2O95376 493 aa12.61□□□□□ -0.39
NEDD9-215ENST00000514660 LINC00271P0C7V0 271 aa12.61□□□□□ -0.39
NEDD9-215ENST00000514660 CKBP12277 381 aa12.61□□□□□ -0.39
NEDD9-215ENST00000514660 SELPP16109 830 aa12.61□□□□□ -0.39
NEDD9-215ENST00000514660 RBL2Q08999 1139 aa12.61□□□□□ -0.39
NEDD9-215ENST00000514660 HIC1Q14526 733 aa12.61□□□□□ -0.39
NEDD9-215ENST00000514660 LRRFIP1Q32MZ4 808 aaKnown RBP12.61□□□□□ -0.39
NEDD9-215ENST00000514660 AFAP1L1Q8TED9 768 aa12.61□□□□□ -0.39
NEDD9-215ENST00000514660 KAT2BQ92831 832 aa12.61□□□□□ -0.39
NEDD9-215ENST00000514660 DNAJC2Q99543 621 aaKnown RBP12.61□□□□□ -0.39
NEDD9-215ENST00000514660 PUS7LQ9H0K6 701 aaKnown RBP12.61□□□□□ -0.39
NEDD9-215ENST00000514660 A6NJR5 290 aa12.6□□□□□ -0.39
NEDD9-215ENST00000514660 CCER2I3L3R5 266 aa12.6□□□□□ -0.39
NEDD9-215ENST00000514660 ALDH5A1P51649 535 aaPredicted RBP12.6□□□□□ -0.39
NEDD9-215ENST00000514660 PTPN11Q06124 597 aaPredicted RBP12.6□□□□□ -0.39
NEDD9-215ENST00000514660 HYAL1Q12794 435 aa12.6□□□□□ -0.39
NEDD9-215ENST00000514660 GPM6BQ13491 265 aa12.6□□□□□ -0.39
NEDD9-215ENST00000514660 TTF1Q15361 905 aaPredicted RBP12.6□□□□□ -0.39
NEDD9-215ENST00000514660 SLFN13Q68D06 897 aa12.6□□□□□ -0.39
NEDD9-215ENST00000514660 FBXL6Q8N531 539 aa12.6□□□□□ -0.39
NEDD9-215ENST00000514660 UPF3BQ9BZI7 483 aaKnown RBP12.6□□□□□ -0.39
NEDD9-215ENST00000514660 CTDP1Q9Y5B0 961 aaPredicted RBP12.6□□□□□ -0.39
NEDD9-215ENST00000514660 SLC4A4Q9Y6R1 1079 aa12.6□□□□□ -0.39
NEDD9-215ENST00000514660 MYO15AQ9UKN7 3530 aa12.59□□□□□ -0.39
NEDD9-215ENST00000514660 H0Y858 1186 aa12.59□□□□□ -0.39
NEDD9-215ENST00000514660 PRDM1O75626 825 aa12.59□□□□□ -0.39
NEDD9-215ENST00000514660 CT47B1P0C2W7 299 aaPredicted RBP12.59□□□□□ -0.39
NEDD9-215ENST00000514660 BMP3P12645 472 aa12.59□□□□□ -0.39
NEDD9-215ENST00000514660 CPT1AP50416 773 aa12.59□□□□□ -0.39
NEDD9-215ENST00000514660 CHMP4BP1P59074 171 aa12.59□□□□□ -0.39
NEDD9-215ENST00000514660 ZXDAP98168 799 aa12.59□□□□□ -0.39
NEDD9-215ENST00000514660 ZNF200P98182 395 aaPredicted RBP12.59□□□□□ -0.39
NEDD9-215ENST00000514660 BAATQ14032 418 aaPredicted RBP12.59□□□□□ -0.39
NEDD9-215ENST00000514660 TIGD5Q53EQ6 642 aa12.59□□□□□ -0.39
NEDD9-215ENST00000514660 NSMFQ6X4W1 530 aa12.59□□□□□ -0.39
NEDD9-215ENST00000514660 GMCL1P1Q8NEA9 526 aa12.59□□□□□ -0.39
NEDD9-215ENST00000514660 CAGE1Q8TC20 777 aa12.59□□□□□ -0.39
NEDD9-215ENST00000514660 ASIC4Q96FT7 647 aa12.59□□□□□ -0.39
NEDD9-215ENST00000514660 NSUN3Q9H649 340 aaKnown RBP12.59□□□□□ -0.39
NEDD9-215ENST00000514660 TLR9Q9NR96 1032 aa12.59□□□□□ -0.39
NEDD9-215ENST00000514660 MTMR4Q9NYA4 1195 aa12.59□□□□□ -0.39
NEDD9-215ENST00000514660 RALGAPA2Q2PPJ7 1873 aa12.59□□□□□ -0.39
NEDD9-215ENST00000514660 CACNA1BQ00975 2339 aa12.59□□□□□ -0.39
NEDD9-215ENST00000514660 NFIBO00712 420 aa12.58□□□□□ -0.4
NEDD9-215ENST00000514660 KRT37O76014 449 aa12.58□□□□□ -0.4
NEDD9-215ENST00000514660 PDGFBP01127 241 aaPredicted RBP12.58□□□□□ -0.4
NEDD9-215ENST00000514660 ZNF618Q5T7W0 954 aa12.58□□□□□ -0.4
NEDD9-215ENST00000514660 SESTD1Q86VW0 696 aa12.58□□□□□ -0.4
NEDD9-215ENST00000514660 DBF4BQ8NFT6 615 aa12.58□□□□□ -0.4
NEDD9-215ENST00000514660 GPHNQ9NQX3 736 aaPredicted RBP12.58□□□□□ -0.4
NEDD9-215ENST00000514660 INSL6Q9Y581 213 aa12.58□□□□□ -0.4
NEDD9-215ENST00000514660 GSG1L2A8MUP6 293 aa12.57□□□□□ -0.4
NEDD9-215ENST00000514660 PROB1E7EW31 1015 aa12.57□□□□□ -0.4
NEDD9-215ENST00000514660 STXBP3O00186 592 aa12.57□□□□□ -0.4
NEDD9-215ENST00000514660 GRM6O15303 877 aa12.57□□□□□ -0.4
NEDD9-215ENST00000514660 AVPR2P30518 371 aa12.57□□□□□ -0.4
NEDD9-215ENST00000514660 CAMK1Q14012 370 aa12.57□□□□□ -0.4
NEDD9-215ENST00000514660 PTPROQ16827 1216 aa12.57□□□□□ -0.4
NEDD9-215ENST00000514660 TKFCQ3LXA3 575 aa12.57□□□□□ -0.4
NEDD9-215ENST00000514660 SBK1Q52WX2 424 aa12.57□□□□□ -0.4
NEDD9-215ENST00000514660 SLC30A10Q6XR72 485 aa12.57□□□□□ -0.4
NEDD9-215ENST00000514660 KCTD1Q719H9 257 aa12.57□□□□□ -0.4
NEDD9-215ENST00000514660 RPAP2Q8IXW5 612 aaPredicted RBP12.57□□□□□ -0.4
NEDD9-215ENST00000514660 TMEM192Q8IY95 271 aa12.57□□□□□ -0.4
NEDD9-215ENST00000514660 ATOH1Q92858 354 aaPredicted RBP12.57□□□□□ -0.4
NEDD9-215ENST00000514660 CRBNQ96SW2 442 aa12.57□□□□□ -0.4
NEDD9-215ENST00000514660 EPB41L4AQ9HCS5 686 aaPredicted RBP12.57□□□□□ -0.4
NEDD9-215ENST00000514660 HDAC6Q9UBN7 1215 aa12.57□□□□□ -0.4
NEDD9-215ENST00000514660 PRR12Q9ULL5 1215 aa12.57□□□□□ -0.4
NEDD9-215ENST00000514660 NOD1Q9Y239 953 aa12.57□□□□□ -0.4
NEDD9-215ENST00000514660 MED19A0JLT2 244 aaPredicted RBP12.56□□□□□ -0.4
NEDD9-215ENST00000514660 PRR23AA6NEV1 266 aa12.56□□□□□ -0.4
NEDD9-215ENST00000514660 LOC730098B7Z3J9 87 aa12.56□□□□□ -0.4
NEDD9-215ENST00000514660 ARP10275 920 aa12.56□□□□□ -0.4
NEDD9-215ENST00000514660 MCCP23508 829 aa12.56□□□□□ -0.4
NEDD9-215ENST00000514660 SMAD4Q13485 552 aaKnown RBP12.56□□□□□ -0.4
NEDD9-215ENST00000514660 IKBKEQ14164 716 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms