RNA–Protein interactions for RNA: ENST00000513988.1

CLDND1-229, Transcript of claudin domain containing 1, humanhuman

TSL 2

Gene CLDND1, Length 598 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-229ENST00000513988 PDS5AQ29RF7 1337 aaKnown RBP9.35□□□□□ -0.91
CLDND1-229ENST00000513988 DNAJC25-GNG10A0A024R161 153 aa9.35□□□□□ -0.91
CLDND1-229ENST00000513988 F6X3S4 739 aa9.35□□□□□ -0.91
CLDND1-229ENST00000513988 AMHP03971 560 aa9.35□□□□□ -0.91
CLDND1-229ENST00000513988 SMPD1P17405 629 aa9.35□□□□□ -0.91
CLDND1-229ENST00000513988 AOC1P19801 751 aa9.35□□□□□ -0.91
CLDND1-229ENST00000513988 CTNNB1P35222 781 aa9.35□□□□□ -0.91
CLDND1-229ENST00000513988 CERKLQ49MI3 558 aaPredicted RBP9.35□□□□□ -0.91
CLDND1-229ENST00000513988 CWF19L1Q69YN2 538 aaKnown RBP9.35□□□□□ -0.91
CLDND1-229ENST00000513988 TATDN1Q6P1N9 297 aa9.35□□□□□ -0.91
CLDND1-229ENST00000513988 LURAP1LQ8IV03 231 aa9.35□□□□□ -0.91
CLDND1-229ENST00000513988 MYOCDQ8IZQ8 938 aa9.35□□□□□ -0.91
CLDND1-229ENST00000513988 AFAP1L1Q8TED9 768 aa9.35□□□□□ -0.91
CLDND1-229ENST00000513988 RUNDC1Q96C34 613 aa9.35□□□□□ -0.91
CLDND1-229ENST00000513988 YME1L1Q96TA2 773 aa9.35□□□□□ -0.91
CLDND1-229ENST00000513988 C11orf84Q9BUA3 381 aaPredicted RBP9.35□□□□□ -0.91
CLDND1-229ENST00000513988 BICC1Q9H694 974 aaKnown RBP9.35□□□□□ -0.91
CLDND1-229ENST00000513988 ZMIZ1Q9ULJ6 1067 aa9.35□□□□□ -0.91
CLDND1-229ENST00000513988 MICAL3Q7RTP6 2002 aa9.34□□□□□ -0.91
CLDND1-229ENST00000513988 GRM6O15303 877 aa9.34□□□□□ -0.91
CLDND1-229ENST00000513988 PI15O43692 258 aa9.34□□□□□ -0.91
CLDND1-229ENST00000513988 PARNO95453 639 aaKnown RBP9.34□□□□□ -0.91
CLDND1-229ENST00000513988 SP100P23497 879 aaPredicted RBP9.34□□□□□ -0.91
CLDND1-229ENST00000513988 ZNF200P98182 395 aaPredicted RBP9.34□□□□□ -0.91
CLDND1-229ENST00000513988 DSG2Q14126 1118 aa9.34□□□□□ -0.91
CLDND1-229ENST00000513988 GPNMBQ14956 572 aa9.34□□□□□ -0.91
CLDND1-229ENST00000513988 TCTN1Q2MV58 587 aa9.34□□□□□ -0.91
CLDND1-229ENST00000513988 RABL6Q3YEC7 729 aaPredicted RBP9.34□□□□□ -0.91
CLDND1-229ENST00000513988 CCDC102BQ68D86 513 aa9.34□□□□□ -0.91
CLDND1-229ENST00000513988 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.34□□□□□ -0.91
CLDND1-229ENST00000513988 LRRC8DQ7L1W4 858 aa9.34□□□□□ -0.91
CLDND1-229ENST00000513988 EFHBQ8N7U6 833 aa9.34□□□□□ -0.91
CLDND1-229ENST00000513988 CAGE1Q8TC20 777 aa9.34□□□□□ -0.91
CLDND1-229ENST00000513988 NSUN4Q96CB9 384 aaKnown RBP9.34□□□□□ -0.91
CLDND1-229ENST00000513988 RTP3Q9BQQ7 232 aa9.34□□□□□ -0.91
CLDND1-229ENST00000513988 KATNBL1Q9H079 304 aa9.34□□□□□ -0.91
CLDND1-229ENST00000513988 POLR3EQ9NVU0 708 aa9.34□□□□□ -0.91
CLDND1-229ENST00000513988 BARX2Q9UMQ3 279 aaPredicted RBP9.34□□□□□ -0.91
CLDND1-229ENST00000513988 LHX6Q9UPM6 363 aa9.34□□□□□ -0.91
CLDND1-229ENST00000513988 CNOT1A5YKK6 2376 aaKnown RBP9.34□□□□□ -0.91
CLDND1-229ENST00000513988 MYO10Q9HD67 2058 aa9.33□□□□□ -0.92
CLDND1-229ENST00000513988 A0A1W2PRG0 241 aa9.33□□□□□ -0.92
CLDND1-229ENST00000513988 EYA2O00167 538 aa9.33□□□□□ -0.92
CLDND1-229ENST00000513988 BAG3O95817 575 aa9.33□□□□□ -0.92
CLDND1-229ENST00000513988 CXCL10P02778 98 aa9.33□□□□□ -0.92
CLDND1-229ENST00000513988 SELPP16109 830 aa9.33□□□□□ -0.92
CLDND1-229ENST00000513988 PTGS1P23219 599 aa9.33□□□□□ -0.92
CLDND1-229ENST00000513988 SEPT2Q15019 361 aa9.33□□□□□ -0.92
CLDND1-229ENST00000513988 PLPP6Q8IY26 295 aa9.33□□□□□ -0.92
CLDND1-229ENST00000513988 CCDC144CPQ8IYA2 1237 aa9.33□□□□□ -0.92
CLDND1-229ENST00000513988 SPICE1Q8N0Z3 855 aa9.33□□□□□ -0.92
CLDND1-229ENST00000513988 SUMF1Q8NBK3 374 aa9.33□□□□□ -0.92
CLDND1-229ENST00000513988 RIN2Q8WYP3 895 aaPredicted RBP9.33□□□□□ -0.92
CLDND1-229ENST00000513988 SMOC2Q9H3U7 446 aa9.33□□□□□ -0.92
CLDND1-229ENST00000513988 GPHNQ9NQX3 736 aaPredicted RBP9.33□□□□□ -0.92
CLDND1-229ENST00000513988 AATFQ9NY61 560 aaKnown RBP eCLIP9.33□□□□□ -0.92
CLDND1-229ENST00000513988 RAI14Q9P0K7 980 aa9.33□□□□□ -0.92
CLDND1-229ENST00000513988 CYSRT1A8MQ03 144 aa9.32□□□□□ -0.92
CLDND1-229ENST00000513988 NBNO60934 754 aa9.32□□□□□ -0.92
CLDND1-229ENST00000513988 RB1P06400 928 aa9.32□□□□□ -0.92
CLDND1-229ENST00000513988 MYL3P08590 195 aa9.32□□□□□ -0.92
CLDND1-229ENST00000513988 SHC2P98077 582 aa9.32□□□□□ -0.92
CLDND1-229ENST00000513988 PURAQ00577 322 aaKnown RBP9.32□□□□□ -0.92
CLDND1-229ENST00000513988 TWISTNBQ3B726 338 aaPredicted RBP9.32□□□□□ -0.92
CLDND1-229ENST00000513988 KIAA1755Q5JYT7 1200 aa9.32□□□□□ -0.92
CLDND1-229ENST00000513988 NFRKBQ6P4R8 1299 aa9.32□□□□□ -0.92
CLDND1-229ENST00000513988 ANKRD44Q8N8A2 993 aa9.32□□□□□ -0.92
CLDND1-229ENST00000513988 PPP1R13LQ8WUF5 828 aa9.32□□□□□ -0.92
CLDND1-229ENST00000513988 SUSD6Q92537 303 aa9.32□□□□□ -0.92
CLDND1-229ENST00000513988 SECISBP2LQ93073 1101 aaKnown RBP9.32□□□□□ -0.92
CLDND1-229ENST00000513988 MTG1Q9BT17 334 aaPredicted RBP9.32□□□□□ -0.92
CLDND1-229ENST00000513988 TSHZ2Q9NRE2 1034 aa9.32□□□□□ -0.92
CLDND1-229ENST00000513988 SERPINB13Q9UIV8 391 aa9.32□□□□□ -0.92
CLDND1-229ENST00000513988 ZNF214Q9UL59 606 aaPredicted RBP9.32□□□□□ -0.92
CLDND1-229ENST00000513988 USP18Q9UMW8 372 aa9.32□□□□□ -0.92
CLDND1-229ENST00000513988 ADAMTS5Q9UNA0 930 aa9.32□□□□□ -0.92
CLDND1-229ENST00000513988 ADAMTS8Q9UP79 889 aa9.32□□□□□ -0.92
CLDND1-229ENST00000513988 Q9Y3F1 56 aa9.32□□□□□ -0.92
CLDND1-229ENST00000513988 PARP14Q460N5 1801 aa9.32□□□□□ -0.92
CLDND1-229ENST00000513988 USP9XQ93008 2570 aaPredicted RBP9.31□□□□□ -0.92
CLDND1-229ENST00000513988 FANCMQ8IYD8 2048 aa9.31□□□□□ -0.92
CLDND1-229ENST00000513988 C5orf67F2Z3F1 127 aa9.31□□□□□ -0.92
CLDND1-229ENST00000513988 VWA5AO00534 786 aa9.31□□□□□ -0.92
CLDND1-229ENST00000513988 KINO60870 393 aaKnown RBP9.31□□□□□ -0.92
CLDND1-229ENST00000513988 ALDH1L1O75891 902 aa9.31□□□□□ -0.92
CLDND1-229ENST00000513988 PMLP29590 882 aa9.31□□□□□ -0.92
CLDND1-229ENST00000513988 ADORA1P30542 326 aa9.31□□□□□ -0.92
CLDND1-229ENST00000513988 GUCY1A2P33402 732 aa9.31□□□□□ -0.92
CLDND1-229ENST00000513988 FOXK1P85037 733 aa9.31□□□□□ -0.92
CLDND1-229ENST00000513988 PTPN11Q06124 597 aaPredicted RBP9.31□□□□□ -0.92
CLDND1-229ENST00000513988 RING1Q06587 406 aa9.31□□□□□ -0.92
CLDND1-229ENST00000513988 CCDC27Q2M243 656 aa9.31□□□□□ -0.92
CLDND1-229ENST00000513988 SNRNP48Q6IEG0 339 aaKnown RBP9.31□□□□□ -0.92
CLDND1-229ENST00000513988 FGD4Q96M96 766 aa9.31□□□□□ -0.92
CLDND1-229ENST00000513988 TEX13BQ9BXU2 312 aa9.31□□□□□ -0.92
CLDND1-229ENST00000513988 CEP126Q9P2H0 1117 aa9.31□□□□□ -0.92
CLDND1-229ENST00000513988 NR2E1Q9Y466 385 aa9.31□□□□□ -0.92
CLDND1-229ENST00000513988 FOCADQ5VW36 1801 aa9.31□□□□□ -0.92
CLDND1-229ENST00000513988 E9PSI1 815 aa9.3□□□□□ -0.92
CLDND1-229ENST00000513988 MPHOSPH10O00566 681 aaKnown RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms