RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 NBPF15Q8N660 670 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 NFATC2IPQ8NCF5 419 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 PKD2L1Q9P0L9 805 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 USTQ9Y2C2 406 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 KCNK3O14649 394 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 CCNT1O60563 726 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 ZBED4O75132 1171 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 ARHGAP44Q17R89 818 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 JADE1Q6IE81 842 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 SYCE1Q8N0S2 351 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 CACTINQ8WUQ7 758 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 DPH5Q9H2P9 285 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 ORC6Q9Y5N6 252 aa9.49□□□□□ -0.89
LIMCH1-218ENST00000513024 DEAF1O75398 565 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 ZMYND10O75800 440 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 TBC1D8O95759 1140 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 PNMA6AP0CW24 399 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 GSPT1P15170 499 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 TCP1P17987 556 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 SLC8A3P57103 927 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 SFMBT2Q5VUG0 894 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 BTN2A1Q7KYR7 527 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 HDDC2Q7Z4H3 204 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 ANKRD13CQ8N6S4 541 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 PSDA5PKW4 1024 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 GPAA1O43292 621 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 BUB1O43683 1085 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 DAB2P98082 770 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 RCN2Q14257 317 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 GLE1Q53GS7 698 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 TNNI3KQ59H18 835 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 UNC5CLQ8IV45 518 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 PARP9Q8IXQ6 854 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 KIFC2Q96AC6 838 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 CNOT10Q9H9A5 744 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 RHBDL2Q9NX52 303 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 FPGT-TNNI3KV9GXZ4 949 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 TSPOAP1O95153 1857 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 CD2BP2O95400 341 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 MSH2P43246 934 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 PALM2Q8IXS6 379 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 PRPF38AQ8NAV1 312 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 OMA1Q96E52 524 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 EEF2KMTQ96G04 330 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 KRT82Q9NSB4 513 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 IQSEC2Q5JU85 1478 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 ABCA6Q8N139 1617 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 STX10O60499 249 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 SPAG7O75391 227 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 RHOBTB1O94844 696 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 CLCN6P51797 869 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 PTPN21Q16825 1174 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 SLFNL1Q499Z3 407 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 ADAT2Q7Z6V5 191 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 SESTD1Q86VW0 696 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 CCDC51Q96ER9 411 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 SPATA17Q96L03 361 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 FGFR1OP2Q9NVK5 253 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 DONSONQ9NYP3 566 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 MYO1AQ9UBC5 1043 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 TLK1Q9UKI8 766 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 HYOU1Q9Y4L1 999 aa9.48□□□□□ -0.89
LIMCH1-218ENST00000513024 ENC1O14682 589 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 ESRRBO95718 433 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 GOLGA8FQ08AF8 430 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 GOLGA8DPQ0D2H9 430 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 INAQ16352 499 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 MMEL1Q495T6 779 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 NXNQ6DKJ4 435 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 TRIML1Q8N9V2 468 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 MAIP1Q8WWC4 291 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 ATP6V0A1Q93050 837 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 THAP11Q96EK4 314 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 EDC3Q96F86 508 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 PPP1R13BQ96KQ4 1090 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 FNBP1Q96RU3 617 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 ARMT1Q9H993 441 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 CDC23Q9UJX2 597 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 GOLGA8QA0A0J9YX86 632 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 GTPBP10A4D1E9 387 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 GOLGA8OA6NCC3 632 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 GOLGA8NF8WBI6 632 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 KRIT1O00522 736 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 PARP1P09874 1014 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 ABCB4P21439 1286 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 LAMB3Q13751 1172 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 WDR44Q5JSH3 913 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 PSPC1Q8WXF1 523 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 HIC2Q96JB3 615 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 TTC1Q99614 292 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 KLC4Q9NSK0 619 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 LRWD1Q9UFC0 647 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 ITGB1BP2Q9UKP3 347 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 CD2APQ9Y5K6 639 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 TRIM37O94972 964 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 OSBPP22059 807 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 ST13P50502 369 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 HDAC4P56524 1084 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 SRLQ86TD4 932 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms