RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ATP6V0A4Q9HBG4 840 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 SLC38A10Q9HBR0 1119 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 ABCB6Q9NP58 842 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 RNF103-CHMP3A0A140T963 221 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 GCNT3O95395 438 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 ADCY7P51828 1080 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 PLTPP55058 493 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 CC2D1AQ6P1N0 951 aaPredicted RBP12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 HDDC2Q7Z4H3 204 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 PATL1Q86TB9 770 aaKnown RBP12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 TERB1Q8NA31 727 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 VIPAS39Q9H9C1 493 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 IL1RAPL1Q9NZN1 696 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 SENP1Q9P0U3 644 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 ZMYND8Q9ULU4 1186 aaPredicted RBP12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 MAPK8IP1Q9UQF2 711 aa12.14□□□□□ -0.47
LIMCH1-217ENST00000512946 CCNT1O60563 726 aaKnown RBP12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 ZRANB2O95218 330 aaKnown RBP eCLIP12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 ZBED6P86452 979 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 KLC3Q6P597 504 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 LMBR1LQ6UX01 489 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 PDIK1LQ8N165 341 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 DSCC1Q9BVC3 393 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 MRPL47Q9HD33 250 aaKnown RBP12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 MCM9Q9NXL9 1143 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 LAD1O00515 517 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 CDH2P19022 906 aaPredicted RBP12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 TAC1P20366 129 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 TXKP42681 527 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 INAQ16352 499 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 SIRT1Q96EB6 747 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 FANCLQ9NW38 375 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 SEMA3EO15041 775 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 GUCY1A3Q02108 690 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 PLS1Q14651 629 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 SGO2Q562F6 1265 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 NUDCD1Q96RS6 583 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 CCDC134Q9H6E4 229 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 ATG3Q9NT62 314 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 USP40Q9NVE5 1235 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 CDV3Q9UKY7 258 aaKnown RBP12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 CTIFO43310 598 aaKnown RBP12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 ATF7P17544 494 aaPredicted RBP12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 ABCB4P21439 1286 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 MRPS25P82663 173 aaKnown RBP12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 RAPH1Q70E73 1250 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 POMGNT1Q8WZA1 660 aa12.13□□□□□ -0.47
LIMCH1-217ENST00000512946 BUB1O43683 1085 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 KRT38O76015 456 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 PDHA1P08559 390 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 PPP2R2AP63151 447 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 TFAP4Q01664 338 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 PTK2Q05397 1052 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 DAB2IPQ5VWQ8 1189 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 BSPRYQ5W0U4 402 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 TRMT44Q8IYL2 757 aaKnown RBP12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 DDI1Q8WTU0 396 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 GINS4Q9BRT9 223 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 DCDC2Q9UHG0 476 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 ARL2BPQ9Y2Y0 163 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 SYNJ2O15056 1496 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 MIF4GDA9UHW6 222 aaKnown RBP12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 NVLO15381 856 aaKnown RBP12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 PPP6R2O75170 966 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 MAP4P27816 1152 aaKnown RBP12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 HSPA13P48723 471 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 DAB2P98082 770 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 BRDTQ58F21 947 aaPredicted RBP12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 LUZP2Q86TE4 346 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 NLRP14Q86W24 1093 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 CHMP6Q96FZ7 201 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 CYTH2Q99418 400 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 ASPSCR1Q9BZE9 553 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 ZBTB3Q9H5J0 574 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 PPARGC1AQ9UBK2 798 aaKnown RBP12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 DENND2AQ9ULE3 1009 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 L3MBTL1Q9Y468 752 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 E2F6O75461 281 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 TRAPPC10P48553 1259 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 AARSP49588 968 aaKnown RBP eCLIP12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 DNAL1Q4LDG9 190 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 CDC37L1Q7L3B6 337 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 PCGF5Q86SE9 256 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 TLK2Q86UE8 772 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 CASP10Q92851 521 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 TRIM45Q9H8W5 580 aaPredicted RBP12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 ATP8A2Q9NTI2 1148 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 HESX1Q9UBX0 185 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 COL4A3BPQ9Y5P4 624 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 TMEM191CA6NGB0 347 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 LRRIQ3A6PVS8 624 aaPredicted RBP12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 H3BRJ5 948 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 H7C0C1 242 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 TMEM191BP0C7N4 346 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 ATP5OP48047 213 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 MFAP3P55082 362 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 KLHL38Q2WGJ6 581 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 AKNAD1Q5T1N1 836 aa12.12□□□□□ -0.47
LIMCH1-217ENST00000512946 SARM1Q6SZW1 724 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms