RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 TBCCQ15814 346 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 PPP6R3Q5H9R7 873 aaPredicted RBP3.89□□□□□ -1.79
USP53-205ENST00000509769 C6orf10Q5SRN2 563 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 PCNX4Q63HM2 1172 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 USHBP1Q8N6Y0 703 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 RTL3Q8N8U3 475 aaKnown RBP3.89□□□□□ -1.79
USP53-205ENST00000509769 RETREG2Q8NC44 543 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 SNRNP27Q8WVK2 155 aaKnown RBP3.89□□□□□ -1.79
USP53-205ENST00000509769 STAMQ92783 540 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 CMTM5Q96DZ9 223 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 DYDC2Q96IM9 177 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 SPOCK3Q9BQ16 436 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 SIKE1Q9BRV8 207 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 SYT17Q9BSW7 474 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 YIPF3Q9GZM5 350 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 HAUS4Q9H6D7 363 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 MOV10Q9HCE1 1003 aaKnown RBP3.89□□□□□ -1.79
USP53-205ENST00000509769 LZTFL1Q9NQ48 299 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 CHIC2Q9UKJ5 165 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 ADGRL2O95490 1459 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 SIPA1L2Q9P2F8 1722 aaPredicted RBP3.89□□□□□ -1.79
USP53-205ENST00000509769 NWD2Q9ULI1 1742 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 DUOX2Q9NRD8 1548 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 MYOM2P54296 1465 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 SAC3D1A6NKF1 404 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 GLRX3O76003 335 aaKnown RBP3.89□□□□□ -1.79
USP53-205ENST00000509769 DDHD2O94830 711 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 LCA5LO95447 670 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 ACTN1P12814 892 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 AP1S2P56377 157 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 TYRO3Q06418 890 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 ADCY2Q08462 1091 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 SRLQ86TD4 932 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 GATAD2AQ86YP4 633 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 ATP11CQ8NB49 1132 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 PDZD8Q8NEN9 1154 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 IMPG2Q9BZV3 1241 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 ZFYVE1Q9HBF4 777 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 RRP7BPQ9NSQ0 103 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 TCP11L1Q9NUJ3 509 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 RABGEF1Q9UJ41 708 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 EFR3BQ9Y2G0 817 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 COMMD10Q9Y6G5 202 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 KIF24Q5T7B8 1368 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 LAMC1P11047 1609 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 CCDC162PA2VCL2 907 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 BIRC5O15392 142 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 PAPOLAP51003 745 aaKnown RBP3.89□□□□□ -1.79
USP53-205ENST00000509769 GOLGA8FQ08AF8 430 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 RAD51AP2Q09MP3 1159 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 GOLGA8DPQ0D2H9 430 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 ITGB3BPQ13352 177 aaPredicted RBP3.89□□□□□ -1.79
USP53-205ENST00000509769 FOXD4L6Q3SYB3 417 aaPredicted RBP3.89□□□□□ -1.79
USP53-205ENST00000509769 RARS2Q5T160 578 aaKnown RBP3.89□□□□□ -1.79
USP53-205ENST00000509769 ATG16L1Q676U5 607 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 KRT39Q6A163 491 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 FOXD4L3Q6VB84 417 aaPredicted RBP3.89□□□□□ -1.79
USP53-205ENST00000509769 TMTC2Q8N394 836 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 MLKLQ8NB16 471 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 LRRC8CQ8TDW0 803 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 OMA1Q96E52 524 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 APOL4Q9BPW4 351 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 RBSNQ9H1K0 784 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 KLC4Q9NSK0 619 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 MCM9Q9NXL9 1143 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 SAP30BPQ9UHR5 308 aaKnown RBP3.89□□□□□ -1.79
USP53-205ENST00000509769 ATPIF1Q9UII2 106 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 ATP8A1Q9Y2Q0 1164 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 SLIT2O94813 1529 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 CDC42BPBQ9Y5S2 1711 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 HFM1A2PYH4 1435 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 ZBTB39O15060 712 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 TLR3O15455 904 aaKnown RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 KLHL41O60662 606 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 SCG2P13521 617 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 KRT13P13646 458 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 SERPINB3P29508 390 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 TNNI2P48788 182 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 AMPHP49418 695 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 PDE6CP51160 858 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 HNRNPH2P55795 449 aaKnown RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 HAND2P61296 217 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 ETF1P62495 437 aaKnown RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 CUL1Q13616 776 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 CAPRIN1Q14444 709 aaKnown RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 ELF2Q15723 593 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 ARMC3Q5W041 872 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 TRAF7Q6Q0C0 670 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 ADCK1Q86TW2 530 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 CATSPER3Q86XQ3 398 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 FLAD1Q8NFF5 587 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 SNIP1Q8TAD8 396 aaKnown RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 DCAF11Q8TEB1 546 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 RMDN1Q96DB5 314 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 THAP11Q96EK4 314 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 NLRP4Q96MN2 994 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 TRIM56Q9BRZ2 755 aaKnown RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.88□□□□□ -1.79
USP53-205ENST00000509769 SUCLA2Q9P2R7 463 aaPredicted RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 CTNNAL1Q9UBT7 734 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms