RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 NSUN6Q8TEA1 469 aaKnown RBP20.86■□□□□ 0.93
TPM3-220ENST00000509601 SCFD2Q8WU76 684 aa20.86■□□□□ 0.93
TPM3-220ENST00000509601 RMDN3Q96TC7 470 aa20.86■□□□□ 0.93
TPM3-220ENST00000509601 LY9Q9HBG7 655 aa20.86■□□□□ 0.93
TPM3-220ENST00000509601 PCDHA1Q9Y5I3 950 aa20.86■□□□□ 0.93
TPM3-220ENST00000509601 HSD17B4P51659 736 aa20.85■□□□□ 0.93
TPM3-220ENST00000509601 PSMC6P62333 389 aa20.85■□□□□ 0.93
TPM3-220ENST00000509601 CREB3L3Q68CJ9 461 aa20.85■□□□□ 0.93
TPM3-220ENST00000509601 IWS1Q96ST2 819 aa20.85■□□□□ 0.93
TPM3-220ENST00000509601 MTA3Q9BTC8 594 aa20.85■□□□□ 0.93
TPM3-220ENST00000509601 NKRFO15226 690 aaKnown RBP eCLIP20.84■□□□□ 0.93
TPM3-220ENST00000509601 CFBP00751 764 aa20.84■□□□□ 0.93
TPM3-220ENST00000509601 TXNP10599 105 aaKnown RBP20.84■□□□□ 0.93
TPM3-220ENST00000509601 MFSD5Q6N075 450 aa20.84■□□□□ 0.93
TPM3-220ENST00000509601 C16orf59Q7L2K0 433 aa20.84■□□□□ 0.93
TPM3-220ENST00000509601 CATIPQ7Z7H3 387 aa20.84■□□□□ 0.93
TPM3-220ENST00000509601 DEFB123Q8N688 67 aa20.84■□□□□ 0.93
TPM3-220ENST00000509601 OR6J1Q8NGC5 347 aa20.84■□□□□ 0.93
TPM3-220ENST00000509601 PNMA6FA0A0J9YX94 578 aa20.83■□□□□ 0.93
TPM3-220ENST00000509601 A6NJR5 290 aa20.83■□□□□ 0.93
TPM3-220ENST00000509601 PRC1O43663 620 aa20.83■□□□□ 0.93
TPM3-220ENST00000509601 PURAQ00577 322 aaKnown RBP20.83■□□□□ 0.93
TPM3-220ENST00000509601 FPGSQ05932 587 aa20.83■□□□□ 0.93
TPM3-220ENST00000509601 TTLL4Q14679 1199 aa20.83■□□□□ 0.93
TPM3-220ENST00000509601 PPP2R5BQ15173 497 aa20.83■□□□□ 0.93
TPM3-220ENST00000509601 HOMER1Q86YM7 354 aa20.83■□□□□ 0.93
TPM3-220ENST00000509601 MAP3K14Q99558 947 aa20.83■□□□□ 0.93
TPM3-220ENST00000509601 SEZ6LQ9BYH1 1024 aa20.83■□□□□ 0.93
TPM3-220ENST00000509601 PXMP2Q9NR77 195 aa20.83■□□□□ 0.93
TPM3-220ENST00000509601 MAP3K20Q9NYL2 800 aaKnown RBP20.83■□□□□ 0.93
TPM3-220ENST00000509601 COL6A3P12111 3177 aa20.83■□□□□ 0.93
TPM3-220ENST00000509601 SH2B2O14492 632 aaPredicted RBP20.82■□□□□ 0.92
TPM3-220ENST00000509601 TLR3O15455 904 aaKnown RBP20.82■□□□□ 0.92
TPM3-220ENST00000509601 NR3C2P08235 984 aa20.82■□□□□ 0.92
TPM3-220ENST00000509601 MCM5P33992 734 aa20.82■□□□□ 0.92
TPM3-220ENST00000509601 CPT1AP50416 773 aa20.82■□□□□ 0.92
TPM3-220ENST00000509601 STXBP2Q15833 593 aa20.82■□□□□ 0.92
TPM3-220ENST00000509601 ARHGEF16Q5VV41 709 aa20.82■□□□□ 0.92
TPM3-220ENST00000509601 SEPT14Q6ZU15 432 aa20.82■□□□□ 0.92
TPM3-220ENST00000509601 SAMD3Q8N6K7 520 aa20.82■□□□□ 0.92
TPM3-220ENST00000509601 TRPV6Q9H1D0 765 aa20.82■□□□□ 0.92
TPM3-220ENST00000509601 ANO2Q9NQ90 1003 aa20.82■□□□□ 0.92
TPM3-220ENST00000509601 POLR3EQ9NVU0 708 aa20.82■□□□□ 0.92
TPM3-220ENST00000509601 MTMR10Q9NXD2 777 aa20.82■□□□□ 0.92
TPM3-220ENST00000509601 EIF3JO75822 258 aaKnown RBP20.81■□□□□ 0.92
TPM3-220ENST00000509601 MYL3P08590 195 aa20.81■□□□□ 0.92
TPM3-220ENST00000509601 EIF2AK2P19525 551 aaKnown RBP20.81■□□□□ 0.92
TPM3-220ENST00000509601 HOXA13P31271 388 aaPredicted RBP20.81■□□□□ 0.92
TPM3-220ENST00000509601 LY6KQ17RY6 165 aa20.81■□□□□ 0.92
TPM3-220ENST00000509601 FAM109BQ6ICB4 259 aaPredicted RBP20.81■□□□□ 0.92
TPM3-220ENST00000509601 CASC1Q6TDU7 716 aa20.81■□□□□ 0.92
TPM3-220ENST00000509601 ZNF654Q8IZM8 581 aa20.81■□□□□ 0.92
TPM3-220ENST00000509601 MYL10Q9BUA6 226 aa20.81■□□□□ 0.92
TPM3-220ENST00000509601 B4GALT4O60513 344 aa20.8■□□□□ 0.92
TPM3-220ENST00000509601 DDAH1O94760 285 aa20.8■□□□□ 0.92
TPM3-220ENST00000509601 CYP2C18P33260 490 aa20.8■□□□□ 0.92
TPM3-220ENST00000509601 LIFRP42702 1097 aa20.8■□□□□ 0.92
TPM3-220ENST00000509601 TMTC2Q8N394 836 aa20.8■□□□□ 0.92
TPM3-220ENST00000509601 TMEM87BQ96K49 555 aa20.8■□□□□ 0.92
TPM3-220ENST00000509601 PDCD2LQ9BRP1 358 aa20.8■□□□□ 0.92
TPM3-220ENST00000509601 MTG1Q9BT17 334 aaPredicted RBP20.8■□□□□ 0.92
TPM3-220ENST00000509601 PPP1R12CQ9BZL4 782 aa20.8■□□□□ 0.92
TPM3-220ENST00000509601 DDX41Q9UJV9 622 aaKnown RBP20.8■□□□□ 0.92
TPM3-220ENST00000509601 RGS20O76081 388 aa20.79■□□□□ 0.92
TPM3-220ENST00000509601 CSF2RAP15509 400 aa20.79■□□□□ 0.92
TPM3-220ENST00000509601 SMARCA1P28370 1054 aa20.79■□□□□ 0.92
TPM3-220ENST00000509601 ARHGAP1Q07960 439 aa20.79■□□□□ 0.92
TPM3-220ENST00000509601 TRAF1Q13077 416 aa20.79■□□□□ 0.92
TPM3-220ENST00000509601 VSIG10LQ86VR7 867 aa20.79■□□□□ 0.92
TPM3-220ENST00000509601 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.79■□□□□ 0.923e-15■■■□□ 16.8
TPM3-220ENST00000509601 ALDH8A1Q9H2A2 487 aaPredicted RBP20.79■□□□□ 0.92
TPM3-220ENST00000509601 UMODL1Q5DID0 1318 aa20.78■□□□□ 0.92
TPM3-220ENST00000509601 GCOM1H8Y6P7 765 aaPredicted RBP20.78■□□□□ 0.92
TPM3-220ENST00000509601 KPNA6O60684 536 aa20.78■□□□□ 0.92
TPM3-220ENST00000509601 POLR2MP0CAP2 368 aa20.78■□□□□ 0.92
TPM3-220ENST00000509601 NBPF20Q3BBV1 942 aa20.78■□□□□ 0.92
TPM3-220ENST00000509601 BRDTQ58F21 947 aaPredicted RBP20.78■□□□□ 0.92
TPM3-220ENST00000509601 TMEM240Q5SV17 173 aa20.78■□□□□ 0.92
TPM3-220ENST00000509601 TMEM199Q8N511 208 aa20.78■□□□□ 0.92
TPM3-220ENST00000509601 SRBD1Q8N5C6 995 aaKnown RBP20.78■□□□□ 0.92
TPM3-220ENST00000509601 PPP1R13LQ8WUF5 828 aa20.78■□□□□ 0.92
TPM3-220ENST00000509601 AFG1LQ8WV93 481 aa20.78■□□□□ 0.92
TPM3-220ENST00000509601 PIBF1Q8WXW3 757 aa20.78■□□□□ 0.92
TPM3-220ENST00000509601 NOC4LQ9BVI4 516 aaKnown RBP20.78■□□□□ 0.92
TPM3-220ENST00000509601 SPZ1Q9BXG8 430 aa20.78■□□□□ 0.92
TPM3-220ENST00000509601 LRRC2Q9BYS8 371 aa20.78■□□□□ 0.92
TPM3-220ENST00000509601 SCN10AQ9Y5Y9 1956 aa20.77■□□□□ 0.92
TPM3-220ENST00000509601 GH1P01241 217 aa20.77■□□□□ 0.92
TPM3-220ENST00000509601 SMAD3P84022 425 aaKnown RBP20.77■□□□□ 0.92
TPM3-220ENST00000509601 EXOSC10Q01780 885 aaKnown RBP20.77■□□□□ 0.92
TPM3-220ENST00000509601 PPIGQ13427 754 aaKnown RBP eCLIP20.77■□□□□ 0.924e-7■□□□□ 9.5
TPM3-220ENST00000509601 PGM5Q15124 567 aa20.77■□□□□ 0.92
TPM3-220ENST00000509601 TSGA10IPQ3SY00 556 aa20.77■□□□□ 0.92
TPM3-220ENST00000509601 RASEFQ8IZ41 740 aa20.77■□□□□ 0.92
TPM3-220ENST00000509601 IL31RAQ8NI17 732 aa20.77■□□□□ 0.92
TPM3-220ENST00000509601 CTCFLQ8NI51 663 aaPredicted RBP20.77■□□□□ 0.92
TPM3-220ENST00000509601 RNPC3Q96LT9 517 aaKnown RBP20.77■□□□□ 0.92
TPM3-220ENST00000509601 HIPK3Q9H422 1215 aa20.77■□□□□ 0.92
TPM3-220ENST00000509601 TRMT13Q9NUP7 481 aaKnown RBP20.77■□□□□ 0.92
TPM3-220ENST00000509601 KIAA1217Q5T5P2 1943 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms