RNA–Protein interactions for RNA: ENST00000508249.1

UBE2D3-223, Transcript of ubiquitin conjugating enzyme E2 D3, human

TSL 4

Gene UBE2D3, Length 604 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-223	ENST00000508249	MORC4	Q8TE76	937 aa		10.87	□□□□□ -0.67
UBE2D3-223	ENST00000508249	RUFY2	Q8WXA3	655 aa		10.87	□□□□□ -0.67
UBE2D3-223	ENST00000508249	PURB	Q96QR8	312 aa	Known RBP	10.87	□□□□□ -0.67
UBE2D3-223	ENST00000508249	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	10.87	□□□□□ -0.67
UBE2D3-223	ENST00000508249	HOMER2	Q9NSB8	354 aa		10.87	□□□□□ -0.67
UBE2D3-223	ENST00000508249	C19orf67	A6NJJ6	358 aa		10.86	□□□□□ -0.67
UBE2D3-223	ENST00000508249	DCX	O43602	365 aa		10.86	□□□□□ -0.67
UBE2D3-223	ENST00000508249	KCNA5	P22460	613 aa		10.86	□□□□□ -0.67
UBE2D3-223	ENST00000508249	PDE4A	P27815	886 aa		10.86	□□□□□ -0.67
UBE2D3-223	ENST00000508249	RFC2	P35250	354 aa		10.86	□□□□□ -0.67
UBE2D3-223	ENST00000508249	ZP2	Q05996	745 aa		10.86	□□□□□ -0.67
UBE2D3-223	ENST00000508249	PTCRA	Q6ISU1	281 aa	Predicted RBP	10.86	□□□□□ -0.67
UBE2D3-223	ENST00000508249	MKNK2	Q9HBH9	465 aa		10.86	□□□□□ -0.67
UBE2D3-223	ENST00000508249	NYAP2	Q9P242	653 aa		10.86	□□□□□ -0.67
UBE2D3-223	ENST00000508249	FBXO40	Q9UH90	709 aa		10.86	□□□□□ -0.67
UBE2D3-223	ENST00000508249	SYNPO2	Q9UMS6	1093 aa		10.86	□□□□□ -0.67
UBE2D3-223	ENST00000508249		Q9Y3F1	56 aa		10.86	□□□□□ -0.67
UBE2D3-223	ENST00000508249	MYO7A	Q13402	2215 aa		10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249		A0A0D9SFI3	127 aa		10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	LINC01553	A4QN01	128 aa		10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	MINDY4B	A8MYZ0	360 aa		10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	RAD21	O60216	631 aa		10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	BAIAP3	O94812	1187 aa		10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	ALAD	P13716	330 aa		10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	SLC4A3	P48751	1232 aa		10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	ERVK-21	P61565	698 aa		10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	PPARA	Q07869	468 aa		10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	NMI	Q13287	307 aa	Predicted RBP	10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	MKRN4P	Q13434	485 aa	Predicted RBP	10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	EEPD1	Q7L9B9	569 aa		10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	RASGRP2	Q7LDG7	609 aa		10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	ZNF444	Q8N0Y2	327 aa	Predicted RBP	10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	DHX38	Q92620	1227 aa	Known RBP	10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	KIFC2	Q96AC6	838 aa		10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	CCDC136	Q96JN2	1154 aa		10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	UIMC1	Q96RL1	719 aa		10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	SEC62	Q99442	399 aa	Known RBP	10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	ACAD9	Q9H845	621 aa		10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	ANAPC4	Q9UJX5	808 aa		10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	KIAA1217	Q5T5P2	1943 aa		10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	PLIN4	Q96Q06	1357 aa		10.85	□□□□□ -0.67
UBE2D3-223	ENST00000508249	CACNA1H	O95180	2353 aa		10.84	□□□□□ -0.67
UBE2D3-223	ENST00000508249	HSPD1	P10809	573 aa	Known RBP	10.84	□□□□□ -0.67
UBE2D3-223	ENST00000508249	ACTN1	P12814	892 aa		10.84	□□□□□ -0.67
UBE2D3-223	ENST00000508249	GSPT1	P15170	499 aa	Known RBP	10.84	□□□□□ -0.67
UBE2D3-223	ENST00000508249	DUSP28	Q4G0W2	176 aa		10.84	□□□□□ -0.67
UBE2D3-223	ENST00000508249	MUM1L1	Q5H9M0	696 aa		10.84	□□□□□ -0.67
UBE2D3-223	ENST00000508249	NOL8	Q76FK4	1167 aa	Known RBP	10.84	□□□□□ -0.67
UBE2D3-223	ENST00000508249	FAM227B	Q96M60	508 aa		10.84	□□□□□ -0.67
UBE2D3-223	ENST00000508249	DSCC1	Q9BVC3	393 aa		10.84	□□□□□ -0.67
UBE2D3-223	ENST00000508249	AP5M1	Q9H0R1	490 aa		10.84	□□□□□ -0.67
UBE2D3-223	ENST00000508249	RNF41	Q9H4P4	317 aa	Predicted RBP	10.84	□□□□□ -0.67
UBE2D3-223	ENST00000508249	RNF146	Q9NTX7	359 aa		10.84	□□□□□ -0.67
UBE2D3-223	ENST00000508249	MTUS1	Q9ULD2	1270 aa		10.84	□□□□□ -0.67
UBE2D3-223	ENST00000508249	WDR87	Q6ZQQ6	2873 aa		10.83	□□□□□ -0.68
UBE2D3-223	ENST00000508249	RBM47	A0AV96	593 aa	Known RBP	10.83	□□□□□ -0.68
UBE2D3-223	ENST00000508249	ASB14	A6NK59	587 aa		10.83	□□□□□ -0.68
UBE2D3-223	ENST00000508249		H3BQ06	376 aa	Predicted RBP	10.83	□□□□□ -0.68
UBE2D3-223	ENST00000508249	ZBED4	O75132	1171 aa		10.83	□□□□□ -0.68
UBE2D3-223	ENST00000508249	GJB5	O95377	273 aa		10.83	□□□□□ -0.68
UBE2D3-223	ENST00000508249	CXCL10	P02778	98 aa		10.83	□□□□□ -0.68
UBE2D3-223	ENST00000508249	SSTR3	P32745	418 aa	Predicted RBP	10.83	□□□□□ -0.68
UBE2D3-223	ENST00000508249	NBPF20	Q3BBV1	942 aa		10.83	□□□□□ -0.68
UBE2D3-223	ENST00000508249	IQSEC1	Q6DN90	963 aa		10.83	□□□□□ -0.68
UBE2D3-223	ENST00000508249	TRAF7	Q6Q0C0	670 aa		10.83	□□□□□ -0.68
UBE2D3-223	ENST00000508249	LRRC47	Q8N1G4	583 aa	Known RBP	10.83	□□□□□ -0.68
UBE2D3-223	ENST00000508249	GMCL1P1	Q8NEA9	526 aa		10.83	□□□□□ -0.68
UBE2D3-223	ENST00000508249	MKL1	Q969V6	931 aa		10.83	□□□□□ -0.68
UBE2D3-223	ENST00000508249	CEP95	Q96GE4	821 aa		10.83	□□□□□ -0.68
UBE2D3-223	ENST00000508249	VTA1	Q9NP79	307 aa		10.83	□□□□□ -0.68
UBE2D3-223	ENST00000508249	CYP39A1	Q9NYL5	469 aa		10.83	□□□□□ -0.68
UBE2D3-223	ENST00000508249	CTNNA3	Q9UI47	895 aa		10.83	□□□□□ -0.68
UBE2D3-223	ENST00000508249	FEM1B	Q9UK73	627 aa		10.83	□□□□□ -0.68
UBE2D3-223	ENST00000508249	KIAA1671	Q9BY89	1806 aa		10.83	□□□□□ -0.68
UBE2D3-223	ENST00000508249	ZFHX4	Q86UP3	3567 aa		10.82	□□□□□ -0.68
UBE2D3-223	ENST00000508249	ORC4	O43929	436 aa		10.82	□□□□□ -0.68
UBE2D3-223	ENST00000508249	ZEB2	O60315	1214 aa		10.82	□□□□□ -0.68
UBE2D3-223	ENST00000508249	NBN	O60934	754 aa		10.82	□□□□□ -0.68
UBE2D3-223	ENST00000508249	FGR	P09769	529 aa		10.82	□□□□□ -0.68
UBE2D3-223	ENST00000508249	SUPT20HL2	P0C7V6	817 aa		10.82	□□□□□ -0.68
UBE2D3-223	ENST00000508249	TSPY3	P0CV98	308 aa		10.82	□□□□□ -0.68
UBE2D3-223	ENST00000508249	TSPY8	P0CW00	308 aa		10.82	□□□□□ -0.68
UBE2D3-223	ENST00000508249	IRS1	P35568	1242 aa		10.82	□□□□□ -0.68
UBE2D3-223	ENST00000508249	RBL2	Q08999	1139 aa		10.82	□□□□□ -0.68
UBE2D3-223	ENST00000508249	TCF15	Q12870	199 aa		10.82	□□□□□ -0.68
UBE2D3-223	ENST00000508249	BMP2KL	Q5H9B9	411 aa		10.82	□□□□□ -0.68
UBE2D3-223	ENST00000508249	IER5L	Q5T953	404 aa		10.82	□□□□□ -0.68
UBE2D3-223	ENST00000508249	NFRKB	Q6P4R8	1299 aa		10.82	□□□□□ -0.68
UBE2D3-223	ENST00000508249	CWC27	Q6UX04	472 aa	Known RBP	10.82	□□□□□ -0.68
UBE2D3-223	ENST00000508249	ZNF589	Q86UQ0	364 aa	Predicted RBP	10.82	□□□□□ -0.68
UBE2D3-223	ENST00000508249	NEDD1	Q8NHV4	660 aa		10.82	□□□□□ -0.68
UBE2D3-223	ENST00000508249	TGS1	Q96RS0	853 aa	Known RBP	10.82	□□□□□ -0.68
UBE2D3-223	ENST00000508249	C17orf80	Q9BSJ5	609 aa		10.82	□□□□□ -0.68
UBE2D3-223	ENST00000508249	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	10.82	□□□□□ -0.68	1e-8	■□□□□ 9.1
UBE2D3-223	ENST00000508249	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	10.82	□□□□□ -0.68
UBE2D3-223	ENST00000508249	KIF28P	B7ZC32	967 aa		10.81	□□□□□ -0.68
UBE2D3-223	ENST00000508249	FOXP2	O15409	715 aa		10.81	□□□□□ -0.68
UBE2D3-223	ENST00000508249	FGA	P02671	866 aa		10.81	□□□□□ -0.68
UBE2D3-223	ENST00000508249	LTBR	P36941	435 aa		10.81	□□□□□ -0.68
UBE2D3-223	ENST00000508249	MBTPS1	Q14703	1052 aa		10.81	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms