RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 NMIQ13287 307 aaPredicted RBP24.61■■□□□ 1.53
SQSTM1-210ENST00000506042 SCLYQ96I15 445 aa24.61■■□□□ 1.53
SQSTM1-210ENST00000506042 RWDD1Q9H446 243 aaPredicted RBP24.61■■□□□ 1.53
SQSTM1-210ENST00000506042 TRMT13Q9NUP7 481 aaKnown RBP24.61■■□□□ 1.53
SQSTM1-210ENST00000506042 A6NJR5 290 aa24.6■■□□□ 1.53
SQSTM1-210ENST00000506042 KCNJ6P48051 423 aa24.6■■□□□ 1.53
SQSTM1-210ENST00000506042 TRAF1Q13077 416 aa24.6■■□□□ 1.53
SQSTM1-210ENST00000506042 NBPF20Q3BBV1 942 aa24.6■■□□□ 1.53
SQSTM1-210ENST00000506042 USH1GQ495M9 461 aa24.6■■□□□ 1.53
SQSTM1-210ENST00000506042 ASPRV1Q53RT3 343 aa24.6■■□□□ 1.53
SQSTM1-210ENST00000506042 DEFB128Q7Z7B8 93 aa24.6■■□□□ 1.53
SQSTM1-210ENST00000506042 USP38Q8NB14 1042 aa24.6■■□□□ 1.53
SQSTM1-210ENST00000506042 NSUN6Q8TEA1 469 aaKnown RBP24.6■■□□□ 1.53
SQSTM1-210ENST00000506042 CLEC4DQ8WXI8 215 aa24.6■■□□□ 1.53
SQSTM1-210ENST00000506042 CTNNA3Q9UI47 895 aa24.6■■□□□ 1.53
SQSTM1-210ENST00000506042 LCTP09848 1927 aa24.59■■□□□ 1.53
SQSTM1-210ENST00000506042 BAIAP3O94812 1187 aa24.59■■□□□ 1.53
SQSTM1-210ENST00000506042 SNHG28P0DPA3 235 aa24.59■■□□□ 1.53
SQSTM1-210ENST00000506042 CYP2C9P11712 490 aa24.59■■□□□ 1.53
SQSTM1-210ENST00000506042 EDNRBP24530 442 aa24.59■■□□□ 1.53
SQSTM1-210ENST00000506042 CCDC85BQ15834 202 aaPredicted RBP24.59■■□□□ 1.53
SQSTM1-210ENST00000506042 RASGRP2Q7LDG7 609 aa24.59■■□□□ 1.53
SQSTM1-210ENST00000506042 CAGE1Q8TC20 777 aa24.59■■□□□ 1.53
SQSTM1-210ENST00000506042 PURBQ96QR8 312 aaKnown RBP24.59■■□□□ 1.53
SQSTM1-210ENST00000506042 IWS1Q96ST2 819 aa24.59■■□□□ 1.53
SQSTM1-210ENST00000506042 KATNAL1Q9BW62 490 aa24.59■■□□□ 1.53
SQSTM1-210ENST00000506042 MRPL11Q9Y3B7 192 aaKnown RBP24.59■■□□□ 1.53
SQSTM1-210ENST00000506042 GH1P01241 217 aa24.58■■□□□ 1.53
SQSTM1-210ENST00000506042 CASTP20810 708 aaKnown RBP24.58■■□□□ 1.53
SQSTM1-210ENST00000506042 STXBP2Q15833 593 aa24.58■■□□□ 1.53
SQSTM1-210ENST00000506042 IMMTQ16891 758 aaKnown RBP24.58■■□□□ 1.53
SQSTM1-210ENST00000506042 PNMA1Q8ND90 353 aa24.58■■□□□ 1.53
SQSTM1-210ENST00000506042 CNNM2Q9H8M5 875 aa24.58■■□□□ 1.53
SQSTM1-210ENST00000506042 GBF1Q92538 1859 aa24.58■■□□□ 1.52
SQSTM1-210ENST00000506042 CHMP4BP1P59074 171 aa24.57■■□□□ 1.52
SQSTM1-210ENST00000506042 SKIV2LQ15477 1246 aaKnown RBP24.57■■□□□ 1.52
SQSTM1-210ENST00000506042 AFAP1L1Q8TED9 768 aa24.57■■□□□ 1.52
SQSTM1-210ENST00000506042 UBAC1Q9BSL1 405 aa24.57■■□□□ 1.52
SQSTM1-210ENST00000506042 KRT23Q9C075 422 aa24.57■■□□□ 1.52
SQSTM1-210ENST00000506042 YBX2Q9Y2T7 364 aaKnown RBP24.57■■□□□ 1.52
SQSTM1-210ENST00000506042 DDX49Q9Y6V7 483 aaKnown RBP24.57■■□□□ 1.52
SQSTM1-210ENST00000506042 CDC37Q16543 378 aaPredicted RBP24.56■■□□□ 1.52
SQSTM1-210ENST00000506042 MICALL1Q8N3F8 863 aa24.56■■□□□ 1.52
SQSTM1-210ENST00000506042 CRBNQ96SW2 442 aa24.56■■□□□ 1.52
SQSTM1-210ENST00000506042 LNPKQ9C0E8 428 aa24.56■■□□□ 1.52
SQSTM1-210ENST00000506042 PARP1P09874 1014 aaKnown RBP24.55■■□□□ 1.52
SQSTM1-210ENST00000506042 SDSP20132 328 aa24.55■■□□□ 1.52
SQSTM1-210ENST00000506042 RABGGTBP53611 331 aa24.55■■□□□ 1.52
SQSTM1-210ENST00000506042 PTGISQ16647 500 aa24.55■■□□□ 1.52
SQSTM1-210ENST00000506042 DGKDQ16760 1214 aa24.55■■□□□ 1.52
SQSTM1-210ENST00000506042 ARHGEF16Q5VV41 709 aa24.55■■□□□ 1.52
SQSTM1-210ENST00000506042 ZNF589Q86UQ0 364 aaPredicted RBP24.55■■□□□ 1.52
SQSTM1-210ENST00000506042 ADAMTS19Q8TE59 1207 aa24.55■■□□□ 1.52
SQSTM1-210ENST00000506042 EFCAB14O75071 495 aa24.54■■□□□ 1.52
SQSTM1-210ENST00000506042 IQCF3P0C7M6 154 aa24.54■■□□□ 1.52
SQSTM1-210ENST00000506042 KCNV1Q6PIU1 500 aa24.54■■□□□ 1.52
SQSTM1-210ENST00000506042 FBXO11Q86XK2 927 aa24.54■■□□□ 1.52
SQSTM1-210ENST00000506042 UHRF1Q96T88 793 aaPredicted RBP24.54■■□□□ 1.52
SQSTM1-210ENST00000506042 RMDN3Q96TC7 470 aa24.54■■□□□ 1.52
SQSTM1-210ENST00000506042 MAP3K20Q9NYL2 800 aaKnown RBP24.54■■□□□ 1.52
SQSTM1-210ENST00000506042 SCN10AQ9Y5Y9 1956 aa24.54■■□□□ 1.52
SQSTM1-210ENST00000506042 TANC1Q9C0D5 1861 aa24.53■■□□□ 1.52
SQSTM1-210ENST00000506042 KDM4AO75164 1064 aa24.53■■□□□ 1.52
SQSTM1-210ENST00000506042 TMEM63BQ5T3F8 832 aa24.53■■□□□ 1.52
SQSTM1-210ENST00000506042 SEPT14Q6ZU15 432 aa24.53■■□□□ 1.52
SQSTM1-210ENST00000506042 C7orf31Q8N865 590 aa24.53■■□□□ 1.52
SQSTM1-210ENST00000506042 ZSCAN10Q96SZ4 725 aaPredicted RBP24.53■■□□□ 1.52
SQSTM1-210ENST00000506042 ZKSCAN3Q9BRR0 538 aa24.53■■□□□ 1.52
SQSTM1-210ENST00000506042 ZBED2Q9BTP6 218 aa24.53■■□□□ 1.52
SQSTM1-210ENST00000506042 LAMA4Q16363 1823 aa24.52■■□□□ 1.52
SQSTM1-210ENST00000506042 CA3P07451 260 aa24.52■■□□□ 1.52
SQSTM1-210ENST00000506042 GOLGA8HP0CJ92 632 aa24.52■■□□□ 1.52
SQSTM1-210ENST00000506042 PTGS1P23219 599 aa24.52■■□□□ 1.52
SQSTM1-210ENST00000506042 ADGRE1Q14246 886 aa24.52■■□□□ 1.52
SQSTM1-210ENST00000506042 SESTD1Q86VW0 696 aa24.52■■□□□ 1.52
SQSTM1-210ENST00000506042 TBC1D10CQ8IV04 446 aa24.52■■□□□ 1.52
SQSTM1-210ENST00000506042 SAMD3Q8N6K7 520 aa24.52■■□□□ 1.52
SQSTM1-210ENST00000506042 UBA5Q9GZZ9 404 aa24.52■■□□□ 1.52
SQSTM1-210ENST00000506042 COG5Q9UP83 839 aa24.52■■□□□ 1.52
SQSTM1-210ENST00000506042 EIF3JO75822 258 aaKnown RBP24.51■■□□□ 1.51
SQSTM1-210ENST00000506042 TRDNQ13061 729 aa24.51■■□□□ 1.51
SQSTM1-210ENST00000506042 LAMC2Q13753 1193 aa24.51■■□□□ 1.51
SQSTM1-210ENST00000506042 CWC27Q6UX04 472 aaKnown RBP24.51■■□□□ 1.51
SQSTM1-210ENST00000506042 ADGRF4Q8IZF3 695 aa24.51■■□□□ 1.51
SQSTM1-210ENST00000506042 DSCC1Q9BVC3 393 aa24.51■■□□□ 1.51
SQSTM1-210ENST00000506042 AMNQ9BXJ7 453 aa24.51■■□□□ 1.51
SQSTM1-210ENST00000506042 MRVI1Q9Y6F6 885 aa24.51■■□□□ 1.51
SQSTM1-210ENST00000506042 TLL1O43897 1013 aa24.5■■□□□ 1.51
SQSTM1-210ENST00000506042 MMP3P08254 477 aa24.5■■□□□ 1.51
SQSTM1-210ENST00000506042 IFIT1BQ5T764 474 aaKnown RBP24.5■■□□□ 1.51
SQSTM1-210ENST00000506042 CHST3Q7LGC8 479 aa24.5■■□□□ 1.51
SQSTM1-210ENST00000506042 CHD1LQ86WJ1 897 aa24.5■■□□□ 1.51
SQSTM1-210ENST00000506042 HERC6Q8IVU3 1022 aa24.5■■□□□ 1.51
SQSTM1-210ENST00000506042 AFG1LQ8WV93 481 aa24.5■■□□□ 1.51
SQSTM1-210ENST00000506042 ANKS1AQ92625 1134 aa24.5■■□□□ 1.51
SQSTM1-210ENST00000506042 OSBPL3Q9H4L5 887 aa24.5■■□□□ 1.51
SQSTM1-210ENST00000506042 MYH6P13533 1939 aa24.5■■□□□ 1.51
SQSTM1-210ENST00000506042 NEDD4P46934 1319 aa24.5■■□□□ 1.51
SQSTM1-210ENST00000506042 MYO9BQ13459 2157 aa24.5■■□□□ 1.51
SQSTM1-210ENST00000506042 SELPP16109 830 aa24.49■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms