RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 RAB21Q9UL25 225 aa11□□□□□ -0.65
CLIP1-204ENST00000501271 MYO6Q9UM54 1294 aa11□□□□□ -0.65
CLIP1-204ENST00000501271 SPATA31A6Q5VVP1 1343 aa11□□□□□ -0.65
CLIP1-204ENST00000501271 KLRG2A4D1S0 409 aaPredicted RBP11□□□□□ -0.65
CLIP1-204ENST00000501271 RCCD1A6NED2 376 aa11□□□□□ -0.65
CLIP1-204ENST00000501271 PSMD14O00487 310 aa11□□□□□ -0.65
CLIP1-204ENST00000501271 ENC1O14682 589 aa11□□□□□ -0.65
CLIP1-204ENST00000501271 TTLL1O95922 423 aa11□□□□□ -0.65
CLIP1-204ENST00000501271 SLURP2P0DP57 97 aa11□□□□□ -0.65
CLIP1-204ENST00000501271 PPP1R2P41236 205 aa11□□□□□ -0.65
CLIP1-204ENST00000501271 ZBED6P86452 979 aa11□□□□□ -0.65
CLIP1-204ENST00000501271 ZNF543Q08ER8 600 aa11□□□□□ -0.65
CLIP1-204ENST00000501271 TMEM266Q2M3C6 531 aa11□□□□□ -0.65
CLIP1-204ENST00000501271 TSR1Q2NL82 804 aaKnown RBP11□□□□□ -0.65
CLIP1-204ENST00000501271 TTBK2Q6IQ55 1244 aa11□□□□□ -0.65
CLIP1-204ENST00000501271 UNC13DQ70J99 1090 aa11□□□□□ -0.65
CLIP1-204ENST00000501271 ADGRF4Q8IZF3 695 aa11□□□□□ -0.65
CLIP1-204ENST00000501271 RETREG2Q8NC44 543 aa11□□□□□ -0.65
CLIP1-204ENST00000501271 ERGIC2Q96RQ1 377 aa11□□□□□ -0.65
CLIP1-204ENST00000501271 NUP58Q9BVL2 599 aa11□□□□□ -0.65
CLIP1-204ENST00000501271 HDAC6Q9UBN7 1215 aa11□□□□□ -0.65
CLIP1-204ENST00000501271 SERPINB13Q9UIV8 391 aa11□□□□□ -0.65
CLIP1-204ENST00000501271 NRXN2Q9P2S2 1712 aa11□□□□□ -0.65
CLIP1-204ENST00000501271 SIPA1L1O43166 1804 aa11□□□□□ -0.65
CLIP1-204ENST00000501271 CTAGE15A4D2H0 777 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 POLR3GO15318 223 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-204ENST00000501271 RHOXF2BP0C7M4 288 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 CTAGE8P0CG41 777 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 OAS2P29728 719 aaKnown RBP10.99□□□□□ -0.65
CLIP1-204ENST00000501271 SHMT1P34896 483 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 CCDC122Q5T0U0 273 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 C10orf71Q711Q0 1435 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 TRAPPC11Q7Z392 1133 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 CTAGE6Q86UF2 777 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 CTAGE4Q8IX94 777 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 SP8Q8IXZ3 490 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 NOA1Q8NC60 698 aaKnown RBP10.99□□□□□ -0.65
CLIP1-204ENST00000501271 SNX29Q8TEQ0 813 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 RAD54LQ92698 747 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 GJA10Q969M2 543 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 CDK5RAP3Q96JB5 506 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 PCMTD1Q96MG8 357 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-204ENST00000501271 RHOXF2Q9BQY4 288 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 COA1Q9GZY4 146 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 NHEJ1Q9H9Q4 299 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-204ENST00000501271 RIC8AQ9NPQ8 531 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 PNMA6FA0A0J9YX94 578 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 ATP1A1P05023 1023 aaKnown RBP10.99□□□□□ -0.65
CLIP1-204ENST00000501271 SLC16A2P36021 539 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 CLK2P49760 499 aaKnown RBP10.99□□□□□ -0.65
CLIP1-204ENST00000501271 SCNN1DP51172 638 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 SMC1AQ14683 1233 aaKnown RBP10.99□□□□□ -0.65
CLIP1-204ENST00000501271 ECM1Q16610 540 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 GLIS3Q8NEA6 775 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 JAKMIP2Q96AA8 810 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 LACRTQ9GZZ8 138 aa10.99□□□□□ -0.65
CLIP1-204ENST00000501271 AFF2P51816 1311 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 PVALEFA0A1B0GWK0 134 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 POTEB2H3BUK9 544 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 MAP2K7O14733 419 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 EPHB6O15197 1021 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 ONECUT3O60422 494 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-204ENST00000501271 CYLC1P35663 651 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-204ENST00000501271 VSNL1P62760 191 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 KRT83P78385 493 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 PDIA5Q14554 519 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 TMEM119Q4V9L6 283 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 FIGNQ5HY92 759 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 BEND6Q5SZJ8 279 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-204ENST00000501271 PPP1R18Q6NYC8 613 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 ZNF662Q6ZS27 426 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 KIAA1328Q86T90 577 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 HNRNPLLQ8WVV9 542 aaKnown RBP10.98□□□□□ -0.65
CLIP1-204ENST00000501271 ZCCHC17Q9NP64 241 aaKnown RBP10.98□□□□□ -0.65
CLIP1-204ENST00000501271 USP40Q9NVE5 1235 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 ATP6V0A2Q9Y487 856 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 COL11A2P13942 1736 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-204ENST00000501271 A0A1W2PQJ5 194 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 EIF3CLB5ME19 914 aaKnown RBP10.98□□□□□ -0.65
CLIP1-204ENST00000501271 USP17L10C9JJH3 530 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 SOCS7O14512 581 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 PLEKP08567 350 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-204ENST00000501271 IDEP14735 1019 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 CYP27A1Q02318 531 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 EHHADHQ08426 723 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 DOK7Q18PE1 504 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 FKBP15Q5T1M5 1219 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 KRT79Q5XKE5 535 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 PPP4R3AQ6IN85 833 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 CDC42EP5Q6NZY7 148 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 KCTD1Q719H9 257 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 GUF1Q8N442 669 aaKnown RBP10.98□□□□□ -0.65
CLIP1-204ENST00000501271 DDX12PQ92771 950 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 HAS1Q92839 578 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 EIF3CQ99613 913 aaKnown RBP10.98□□□□□ -0.65
CLIP1-204ENST00000501271 RAB34Q9BZG1 259 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 ZNHIT6Q9NWK9 470 aaKnown RBP10.98□□□□□ -0.65
CLIP1-204ENST00000501271 SWAP70Q9UH65 585 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 SIK3Q9Y2K2 1263 aa10.98□□□□□ -0.65
CLIP1-204ENST00000501271 SUGT1Q9Y2Z0 365 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms