RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 C6orf229H3BNL8 230 aa17.96■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 TULP2O00295 520 aa17.96■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 UFL1O94874 794 aa17.96■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 HDXQ7Z353 690 aa17.96■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 TTLL6Q8N841 843 aa17.96■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 CNOT6LQ96LI5 555 aaKnown RBP17.96■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 HDAC6Q9UBN7 1215 aa17.96■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 RCCD1A6NED2 376 aa17.96■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 BTDP43251 543 aa17.96■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 GYS2P54840 703 aa17.96■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 ZNF804AQ7Z570 1209 aa17.96■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 NEK8Q86SG6 692 aa17.96■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 C6orf50Q9HD87 102 aa17.96■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 GPR75-ASB3A0A0A6YYF3 556 aa17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 BICDL2A1A5D9 508 aa17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 ENC1O14682 589 aa17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 ERLIN1O75477 346 aa17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 ATP1A1P05023 1023 aaKnown RBP17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 ALDH1B1P30837 517 aa17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 TECP42680 631 aa17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 ASIC1P78348 528 aa17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 TBC1D8BQ0IIM8 1120 aa17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 PAPD7Q5XG87 772 aaKnown RBP17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 ZSCAN29Q8IWY8 852 aaPredicted RBP17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 KIAA0895Q8NCT3 520 aa17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 NEK11Q8NG66 645 aa17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 NUP58Q9BVL2 599 aa17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 PDE11AQ9HCR9 933 aa17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 BRCA1P38398 1863 aaKnown RBP17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 NOVP48745 357 aa17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 MCM6Q14566 821 aa17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 TSR1Q2NL82 804 aaKnown RBP17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 COBLL1Q53SF7 1204 aa17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 CCDC122Q5T0U0 273 aa17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 RETREG2Q8NC44 543 aa17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 TBCKQ8TEA7 893 aa17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 HPS3Q969F9 1004 aa17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 RRP36Q96EU6 259 aaKnown RBP17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 PIGSQ96S52 555 aa17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 PIM2Q9P1W9 311 aa17.95■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 SMARCA1P28370 1054 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 GNA11P29992 359 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 MMP14P50281 582 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 HNRNPH2P55795 449 aaKnown RBP17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 KRT83P78385 493 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 ZBED6P86452 979 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 STYK1Q6J9G0 422 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 LACRTQ9GZZ8 138 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 SEMA6BQ9H3T3 888 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 YY1AP1Q9H869 796 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 NHEJ1Q9H9Q4 299 aaPredicted RBP17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 ZNF287Q9HBT7 754 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 ATP6V0A2Q9Y487 856 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 EIF3CLB5ME19 914 aaKnown RBP17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 EDIL3O43854 480 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 BBOX1O75936 387 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 WDR93Q6P2C0 686 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 POTEDQ86YR6 584 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 CCDC47Q96A33 483 aaKnown RBP17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 JAKMIP2Q96AA8 810 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 CEP95Q96GE4 821 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 ERGIC2Q96RQ1 377 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 EIF3CQ99613 913 aaKnown RBP17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 VAT1LQ9HCJ6 419 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 CD209Q9NNX6 404 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 TMEM260Q9NX78 707 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 CALCOCO1Q9P1Z2 691 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 BIN2Q9UBW5 565 aaPredicted RBP17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 ADAM21Q9UKJ8 722 aa17.94■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 TRIM21P19474 475 aaKnown RBP17.93■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 RHBDL3P58872 404 aa17.93■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 GRB10Q13322 594 aa17.93■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 DOK7Q18PE1 504 aa17.93■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 FIGNQ5HY92 759 aa17.93■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 TEX11Q8IYF3 940 aa17.93■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 MTMR9Q96QG7 549 aa17.93■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 MMS19Q96T76 1030 aa17.93■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 NOC4LQ9BVI4 516 aaKnown RBP17.93■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 BLOC1S4Q9NUP1 217 aa17.93■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 SRGAP2O75044 1071 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 CYLC1P35663 651 aaPredicted RBP17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 PPP1R2P41236 205 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 MTIF2P46199 727 aaKnown RBP17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 DPP8Q6V1X1 898 aaPredicted RBP17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 FAM114A1Q8IWE2 563 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 CCDC170Q8IYT3 715 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 TBC1D16Q8TBP0 767 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 C7orf43Q8WVR3 580 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 CNKSR1Q969H4 720 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 PNMA5Q96PV4 448 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 PURBQ96QR8 312 aaKnown RBP17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 UBA5Q9GZZ9 404 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 SAR1BQ9Y6B6 198 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 A0A1W2PQJ5 194 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 ESYT2A0FGR8 921 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 USP17L5A8MUK1 530 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 N4BP1O75113 896 aaKnown RBP17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 TUBBP07437 444 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 USP14P54578 494 aa17.92■□□□□ 0.46
MSH5-SAPCD1-208ENST00000498473 TGFB2P61812 414 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms