RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 CDK8P49336 464 aa6.99□□□□□ -1.29
SSBP1-213ENST00000496622 SLC35G1Q2M3R5 365 aa6.99□□□□□ -1.29
SSBP1-213ENST00000496622 CDC42EP5Q6NZY7 148 aa6.99□□□□□ -1.29
SSBP1-213ENST00000496622 CPLX2Q6PUV4 134 aaKnown RBP6.99□□□□□ -1.29
SSBP1-213ENST00000496622 USP17L2Q6R6M4 530 aa6.99□□□□□ -1.29
SSBP1-213ENST00000496622 CATIPQ7Z7H3 387 aa6.99□□□□□ -1.29
SSBP1-213ENST00000496622 BPHLQ86WA6 291 aaPredicted RBP6.99□□□□□ -1.29
SSBP1-213ENST00000496622 ZNF444Q8N0Y2 327 aaPredicted RBP6.99□□□□□ -1.29
SSBP1-213ENST00000496622 CACTIN-AS1Q8N1I8 211 aa6.99□□□□□ -1.29
SSBP1-213ENST00000496622 VAT1LQ9HCJ6 419 aa6.99□□□□□ -1.29
SSBP1-213ENST00000496622 PDS5AQ29RF7 1337 aaKnown RBP6.99□□□□□ -1.29
SSBP1-213ENST00000496622 ARAP2Q8WZ64 1704 aa6.99□□□□□ -1.29
SSBP1-213ENST00000496622 PPIP5K2O43314 1243 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 SH3BP5O60239 455 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 LDHCP07864 332 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 GSTO1P78417 241 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 ATP2B2Q01814 1243 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 GABPB1Q06547 395 aaPredicted RBP6.98□□□□□ -1.29
SSBP1-213ENST00000496622 ISM2Q6H9L7 571 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 C16orf87Q6PH81 154 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 CCAR1Q8IX12 1150 aaKnown RBP6.98□□□□□ -1.29
SSBP1-213ENST00000496622 LINC00301Q8NCQ3 95 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 PNMA1Q8ND90 353 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 PHC3Q8NDX5 983 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 RASGRP4Q8TDF6 673 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 CEP95Q96GE4 821 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 EYA3Q99504 573 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 TDRD3Q9H7E2 651 aaKnown RBP6.98□□□□□ -1.29
SSBP1-213ENST00000496622 CABP5Q9NP86 173 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 CFAP45Q9UL16 551 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 SYNPO2Q9UMS6 1093 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 BRCA2P51587 3418 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 SHTN1A0MZ66 631 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 ANKRD62A6NC57 917 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 ANKRD33BA6NCL7 494 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 CYTH3O43739 400 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 SLFN14P0C7P3 912 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 BMP1P13497 986 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 FSHRP23945 695 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 GRM5P41594 1212 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 CRKP46108 304 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 TOB1P50616 345 aaPredicted RBP6.98□□□□□ -1.29
SSBP1-213ENST00000496622 NDUFA8P51970 172 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 STK38Q15208 465 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 SBK1Q52WX2 424 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 CCDC183Q5T5S1 534 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 WDR78Q5VTH9 848 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 TRIM74Q86UV6 250 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 TRIM73Q86UV7 250 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 ZSCAN30Q86W11 494 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 HOMER1Q86YM7 354 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 ZSCAN29Q8IWY8 852 aaPredicted RBP6.98□□□□□ -1.29
SSBP1-213ENST00000496622 TRIM22Q8IYM9 498 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 LRRC47Q8N1G4 583 aaKnown RBP6.98□□□□□ -1.29
SSBP1-213ENST00000496622 PRMT6Q96LA8 375 aaPredicted RBP6.98□□□□□ -1.29
SSBP1-213ENST00000496622 TMEM47Q9BQJ4 181 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 ARHGAP9Q9BRR9 750 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 UBA5Q9GZZ9 404 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 IRF2BPLQ9H1B7 796 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 RCOR1Q9UKL0 485 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 FAM205AQ6ZU69 1335 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 DOCK2Q92608 1830 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 DUOX1Q9NRD9 1551 aa6.98□□□□□ -1.29
SSBP1-213ENST00000496622 CLRN2A0PK11 232 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 DDTLA6NHG4 134 aaPredicted RBP6.97□□□□□ -1.29
SSBP1-213ENST00000496622 ORC4O43929 436 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 CDKL5O76039 1030 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 STK10O94804 968 aaKnown RBP6.97□□□□□ -1.29
SSBP1-213ENST00000496622 ZRANB2O95218 330 aaKnown RBP eCLIP6.97□□□□□ -1.29
SSBP1-213ENST00000496622 ABL2P42684 1182 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 CCDC15Q0P6D6 951 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 SNW1Q13573 536 aaKnown RBP6.97□□□□□ -1.29
SSBP1-213ENST00000496622 TRIM29Q14134 588 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 E2F5Q15329 346 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 DACT2Q5SW24 774 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 SNIP1Q8TAD8 396 aaKnown RBP6.97□□□□□ -1.29
SSBP1-213ENST00000496622 TBC1D22AQ8WUA7 517 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 VTI1AQ96AJ9 217 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 DRC1Q96MC2 740 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 RASSF4Q9H2L5 321 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 KAT14Q9H8E8 782 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 SUN2Q9UH99 717 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 PCDHB6Q9Y5E3 794 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 FRMPD2Q68DX3 1309 aaPredicted RBP6.97□□□□□ -1.29
SSBP1-213ENST00000496622 CREB3O43889 395 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 MMP1P03956 469 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 SLC3A2P08195 630 aaKnown RBP6.97□□□□□ -1.29
SSBP1-213ENST00000496622 FAM200BP0CF97 657 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 AKR1B1P15121 316 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 GYS2P54840 703 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 ANO1Q5XXA6 986 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 TTC19Q6DKK2 380 aaPredicted RBP6.97□□□□□ -1.29
SSBP1-213ENST00000496622 USP49Q70CQ1 688 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 PODNQ7Z5L7 613 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 FSIP1Q8NA03 581 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 TEKT1Q969V4 418 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 COL25A1Q9BXS0 654 aaPredicted RBP6.97□□□□□ -1.29
SSBP1-213ENST00000496622 NUP62CLQ9H1M0 184 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 TNMDQ9H2S6 317 aa6.97□□□□□ -1.29
SSBP1-213ENST00000496622 TSPY26PQ9H489 355 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms