RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 TEX2Q8IWB9 1127 aa8.85□□□□□ -0.99
SF3B1-212ENST00000496458 MZB1Q8WU39 189 aa8.85□□□□□ -0.99
SF3B1-212ENST00000496458 AARSD1Q9BTE6 412 aaKnown RBP8.85□□□□□ -0.99
SF3B1-212ENST00000496458 ARHGEF4Q9NR80 690 aa8.85□□□□□ -0.99
SF3B1-212ENST00000496458 CFPP27918 469 aa8.84□□□□□ -0.99
SF3B1-212ENST00000496458 NCKAP1LP55160 1127 aa8.84□□□□□ -0.99
SF3B1-212ENST00000496458 RPL11P62913 178 aaKnown RBP8.84□□□□□ -0.99
SF3B1-212ENST00000496458 SLC35F1Q5T1Q4 408 aa8.84□□□□□ -0.99
SF3B1-212ENST00000496458 WWC2Q6AWC2 1192 aa8.84□□□□□ -0.99
SF3B1-212ENST00000496458 SPATC1Q76KD6 591 aa8.84□□□□□ -0.99
SF3B1-212ENST00000496458 NPM2Q86SE8 214 aaKnown RBP8.84□□□□□ -0.99
SF3B1-212ENST00000496458 KRTAP1-3Q8IUG1 177 aa8.84□□□□□ -0.99
SF3B1-212ENST00000496458 LRRC56Q8IYG6 542 aaPredicted RBP8.84□□□□□ -0.99
SF3B1-212ENST00000496458 KCTD13Q8WZ19 329 aa8.84□□□□□ -0.99
SF3B1-212ENST00000496458 SIRPGQ9P1W8 387 aa8.84□□□□□ -0.99
SF3B1-212ENST00000496458 CNOT6Q9ULM6 557 aaKnown RBP8.84□□□□□ -0.99
SF3B1-212ENST00000496458 TIMM13Q9Y5L4 95 aaPredicted RBP8.84□□□□□ -0.99
SF3B1-212ENST00000496458 MYO1BO43795 1136 aa8.83□□□□□ -1
SF3B1-212ENST00000496458 NTRK1P04629 796 aa8.83□□□□□ -1
SF3B1-212ENST00000496458 LTBRP36941 435 aa8.83□□□□□ -1
SF3B1-212ENST00000496458 RBM10P98175 930 aaKnown RBP8.83□□□□□ -1
SF3B1-212ENST00000496458 MAP4K2Q12851 820 aa8.83□□□□□ -1
SF3B1-212ENST00000496458 SSPNQ14714 243 aa8.83□□□□□ -1
SF3B1-212ENST00000496458 MTERF2Q49AM1 385 aa8.83□□□□□ -1
SF3B1-212ENST00000496458 LRRC47Q8N1G4 583 aaKnown RBP8.83□□□□□ -1
SF3B1-212ENST00000496458 NETO2Q8NC67 525 aa8.83□□□□□ -1
SF3B1-212ENST00000496458 RCBTB1Q8NDN9 531 aa8.83□□□□□ -1
SF3B1-212ENST00000496458 PLEKHO2Q8TD55 490 aa8.83□□□□□ -1
SF3B1-212ENST00000496458 NUDT5Q9UKK9 219 aa8.83□□□□□ -1
SF3B1-212ENST00000496458 PLA2G2DQ9UNK4 145 aa8.83□□□□□ -1
SF3B1-212ENST00000496458 IRAK3Q9Y616 596 aa8.83□□□□□ -1
SF3B1-212ENST00000496458 C22orf46C9J442 243 aa8.82□□□□□ -1
SF3B1-212ENST00000496458 PRODHO43272 600 aa8.82□□□□□ -1
SF3B1-212ENST00000496458 DLX3O60479 287 aa8.82□□□□□ -1
SF3B1-212ENST00000496458 LCP1P13796 627 aa8.82□□□□□ -1
SF3B1-212ENST00000496458 FPR2P25090 351 aa8.82□□□□□ -1
SF3B1-212ENST00000496458 RBL2Q08999 1139 aa8.82□□□□□ -1
SF3B1-212ENST00000496458 SERINC3Q13530 473 aa8.82□□□□□ -1
SF3B1-212ENST00000496458 RASGRF1Q13972 1273 aa8.82□□□□□ -1
SF3B1-212ENST00000496458 SIGLEC10Q96LC7 697 aa8.82□□□□□ -1
SF3B1-212ENST00000496458 CCDC113Q9H0I3 377 aa8.82□□□□□ -1
SF3B1-212ENST00000496458 PFDN2Q9UHV9 154 aa8.82□□□□□ -1
SF3B1-212ENST00000496458 FBXL7Q9UJT9 491 aa8.82□□□□□ -1
SF3B1-212ENST00000496458 KCTD3Q9Y597 815 aa8.82□□□□□ -1
SF3B1-212ENST00000496458 PCDHA5Q9Y5H7 936 aa8.82□□□□□ -1
SF3B1-212ENST00000496458 NUAK1O60285 661 aa8.81□□□□□ -1
SF3B1-212ENST00000496458 PI3P19957 117 aa8.81□□□□□ -1
SF3B1-212ENST00000496458 BCL6P41182 706 aa8.81□□□□□ -1
SF3B1-212ENST00000496458 FZD5Q13467 585 aa8.81□□□□□ -1
SF3B1-212ENST00000496458 TESK1Q15569 626 aa8.81□□□□□ -1
SF3B1-212ENST00000496458 YOD1Q5VVQ6 348 aaPredicted RBP8.81□□□□□ -1
SF3B1-212ENST00000496458 CIAPIN1Q6FI81 312 aa8.81□□□□□ -1
SF3B1-212ENST00000496458 USP53Q70EK8 1073 aa8.81□□□□□ -1
SF3B1-212ENST00000496458 NLRP10Q86W26 655 aa8.81□□□□□ -1
SF3B1-212ENST00000496458 C1QL4Q86Z23 238 aa8.81□□□□□ -1
SF3B1-212ENST00000496458 IGDCC3Q8IVU1 814 aa8.81□□□□□ -1
SF3B1-212ENST00000496458 ZSCAN18Q8TBC5 510 aaPredicted RBP8.81□□□□□ -1
SF3B1-212ENST00000496458 PMFBP1Q8TBY8 1022 aa8.81□□□□□ -1
SF3B1-212ENST00000496458 SREK1Q8WXA9 508 aaKnown RBP8.81□□□□□ -1
SF3B1-212ENST00000496458 ZNF669Q96BR6 464 aaPredicted RBP8.81□□□□□ -1
SF3B1-212ENST00000496458 PEX11GQ96HA9 241 aa8.81□□□□□ -1
SF3B1-212ENST00000496458 SPATA9Q9BWV2 254 aa8.81□□□□□ -1
SF3B1-212ENST00000496458 BCAS3Q9H6U6 928 aa8.81□□□□□ -1
SF3B1-212ENST00000496458 SIT1Q9Y3P8 196 aa8.81□□□□□ -1
SF3B1-212ENST00000496458 PCDHA2Q9Y5H9 948 aa8.81□□□□□ -1
SF3B1-212ENST00000496458 TRAV20A0A0B4J274 112 aa8.8□□□□□ -1
SF3B1-212ENST00000496458 FGFR1P11362 822 aa8.8□□□□□ -1
SF3B1-212ENST00000496458 GTF2A2P52657 109 aa8.8□□□□□ -1
SF3B1-212ENST00000496458 CEP68Q76N32 757 aa8.8□□□□□ -1
SF3B1-212ENST00000496458 ALG3Q92685 438 aa8.8□□□□□ -1
SF3B1-212ENST00000496458 CHAMP1Q96JM3 812 aa8.8□□□□□ -1
SF3B1-212ENST00000496458 IRF2BPLQ9H1B7 796 aa8.8□□□□□ -1
SF3B1-212ENST00000496458 RFXAPO00287 272 aa8.79□□□□□ -1
SF3B1-212ENST00000496458 IRS4O14654 1257 aaPredicted RBP8.79□□□□□ -1
SF3B1-212ENST00000496458 BUB1BO60566 1050 aaPredicted RBP8.79□□□□□ -1
SF3B1-212ENST00000496458 PABPC1P11940 636 aaKnown RBP8.79□□□□□ -1
SF3B1-212ENST00000496458 SSRP1Q08945 709 aaKnown RBP8.79□□□□□ -1
SF3B1-212ENST00000496458 RASA3Q14644 834 aa8.79□□□□□ -1
SF3B1-212ENST00000496458 NSMFQ6X4W1 530 aa8.79□□□□□ -1
SF3B1-212ENST00000496458 DCP2Q8IU60 420 aaKnown RBP8.79□□□□□ -1
SF3B1-212ENST00000496458 OSBP2Q969R2 916 aa8.79□□□□□ -1
SF3B1-212ENST00000496458 TSPAN17Q96FV3 270 aa8.79□□□□□ -1
SF3B1-212ENST00000496458 TRMT2BQ96GJ1 504 aaKnown RBP8.79□□□□□ -1
SF3B1-212ENST00000496458 TMEM169Q96HH4 297 aa8.79□□□□□ -1
SF3B1-212ENST00000496458 DEPDC7Q96QD5 511 aa8.79□□□□□ -1
SF3B1-212ENST00000496458 DNAJC2Q99543 621 aaKnown RBP8.79□□□□□ -1
SF3B1-212ENST00000496458 IRS2Q9Y4H2 1338 aa8.79□□□□□ -1
SF3B1-212ENST00000496458 DIAPH1O60610 1272 aaKnown RBP8.78□□□□□ -1
SF3B1-212ENST00000496458 FBLN1P23142 703 aa8.78□□□□□ -1
SF3B1-212ENST00000496458 ZNF385BQ569K4 471 aa8.78□□□□□ -1
SF3B1-212ENST00000496458 PANK1Q8TE04 598 aa8.78□□□□□ -1
SF3B1-212ENST00000496458 SNTG2Q9NY99 539 aa8.78□□□□□ -1
SF3B1-212ENST00000496458 NPFFR2Q9Y5X5 522 aa8.78□□□□□ -1
SF3B1-212ENST00000496458 FAM221BA6H8Z2 402 aa8.77□□□□□ -1.01
SF3B1-212ENST00000496458 PFKLP17858 780 aa8.77□□□□□ -1.01
SF3B1-212ENST00000496458 IFRD2Q12894 506 aaPredicted RBP8.77□□□□□ -1.01
SF3B1-212ENST00000496458 LSAMPQ13449 338 aa8.77□□□□□ -1.01
SF3B1-212ENST00000496458 TARBP2Q15633 366 aaKnown RBP8.77□□□□□ -1.01
SF3B1-212ENST00000496458 TMEFF1Q8IYR6 380 aa8.77□□□□□ -1.01
SF3B1-212ENST00000496458 Q8N1Y9 231 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms