RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 ZNF142P52746 1687 aaPredicted RBP10.72□□□□□ -0.69
SYNE1-230ENST00000495090 C5orf60A6NFR6 353 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 HEXIM1O94992 359 aaKnown RBP10.72□□□□□ -0.69
SYNE1-230ENST00000495090 PAEPP09466 180 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 MYBP10242 640 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 NF2P35240 595 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 EIF4A3P38919 411 aaKnown RBP10.72□□□□□ -0.69
SYNE1-230ENST00000495090 PRPHP41219 470 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 CARSP49589 748 aaKnown RBP10.72□□□□□ -0.69
SYNE1-230ENST00000495090 HDLBPQ00341 1268 aaKnown RBP10.72□□□□□ -0.69
SYNE1-230ENST00000495090 BIRC3Q13489 604 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 SNCBQ16143 134 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 ASTE1Q2TB18 679 aaPredicted RBP10.72□□□□□ -0.69
SYNE1-230ENST00000495090 LACTB2Q53H82 288 aaPredicted RBP10.72□□□□□ -0.69
SYNE1-230ENST00000495090 KCTD16Q68DU8 428 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 TYW1BQ6NUM6 668 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 DTHD1Q6ZMT9 781 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 CCDC121Q6ZUS5 278 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 NLRP10Q86W26 655 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 CYFIP2Q96F07 1278 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 PCMTD1Q96MG8 357 aaPredicted RBP10.72□□□□□ -0.69
SYNE1-230ENST00000495090 TMBIM4Q9HC24 238 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 CD248Q9HCU0 757 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 NFU1Q9UMS0 254 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 GOLGA6L10A6NI86 522 aa10.71□□□□□ -0.69
SYNE1-230ENST00000495090 AKR1B10O60218 316 aa10.71□□□□□ -0.69
SYNE1-230ENST00000495090 PDE8AO60658 829 aa10.71□□□□□ -0.69
SYNE1-230ENST00000495090 PLEKP08567 350 aaPredicted RBP10.71□□□□□ -0.69
SYNE1-230ENST00000495090 MATR3P43243 847 aaKnown RBP eCLIP10.71□□□□□ -0.69
SYNE1-230ENST00000495090 MAGEA1P43355 309 aa10.71□□□□□ -0.69
SYNE1-230ENST00000495090 CDC37Q16543 378 aaPredicted RBP10.71□□□□□ -0.69
SYNE1-230ENST00000495090 RNF187Q5TA31 235 aaPredicted RBP10.71□□□□□ -0.69
SYNE1-230ENST00000495090 ANKRD40Q6AI12 368 aa10.71□□□□□ -0.69
SYNE1-230ENST00000495090 FOXR2Q6PJQ5 311 aa10.71□□□□□ -0.69
SYNE1-230ENST00000495090 C2CD5Q86YS7 1000 aa10.71□□□□□ -0.69
SYNE1-230ENST00000495090 BANK1Q8NDB2 785 aa10.71□□□□□ -0.69
SYNE1-230ENST00000495090 RBM33Q96EV2 1170 aaKnown RBP10.71□□□□□ -0.69
SYNE1-230ENST00000495090 SGSM3Q96HU1 749 aa10.71□□□□□ -0.69
SYNE1-230ENST00000495090 AK8Q96MA6 479 aa10.71□□□□□ -0.69
SYNE1-230ENST00000495090 NUCKS1Q9H1E3 243 aaKnown RBP10.71□□□□□ -0.69
SYNE1-230ENST00000495090 VEZTQ9HBM0 779 aa10.71□□□□□ -0.69
SYNE1-230ENST00000495090 EPB41L5Q9HCM4 733 aa10.71□□□□□ -0.69
SYNE1-230ENST00000495090 LUC7LQ9NQ29 371 aaKnown RBP10.71□□□□□ -0.69
SYNE1-230ENST00000495090 GMNCA6NCL1 334 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 IRS4O14654 1257 aaPredicted RBP10.7□□□□□ -0.7
SYNE1-230ENST00000495090 TRAPPC3O43617 180 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 FGFR1OPO95684 399 aaKnown RBP10.7□□□□□ -0.7
SYNE1-230ENST00000495090 FAM153BP0C7A2 387 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 GCFC2P16383 781 aaKnown RBP10.7□□□□□ -0.7
SYNE1-230ENST00000495090 SLC8A1P32418 973 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 UBA7P41226 1012 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 IFT88Q13099 833 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 FAM153CQ494X1 144 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 VWA3BQ502W6 1294 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 PPP4R3CPQ6ZMV5 832 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 PARP9Q8IXQ6 854 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 SRBD1Q8N5C6 995 aaKnown RBP10.7□□□□□ -0.7
SYNE1-230ENST00000495090 SYN2Q92777 582 aaPredicted RBP10.7□□□□□ -0.7
SYNE1-230ENST00000495090 MIEF2Q96C03 454 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 C7orf25Q9BPX7 421 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 DNAJC5Q9H3Z4 198 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 FAM153AQ9UHL3 310 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 SLC12A6Q9UHW9 1150 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 ODF2LQ9ULJ1 636 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 hCG_1642624A0A1W2PR95 340 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 E7EVH7 732 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 GHRP10912 638 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 ERCC3P19447 782 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 CXCR5P32302 372 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 TNNC1P63316 161 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 GUCY2DQ02846 1103 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 XRCC4Q13426 336 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 CUL1Q13616 776 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 CRYMQ14894 314 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 MAN2A1Q16706 1144 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 NBPF9Q3BBW0 867 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 CENPPQ6IPU0 288 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 GALNT17Q6IS24 598 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 CYB5D1Q6P9G0 228 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 RUFY4Q6ZNE9 571 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 BLIDQ8IZY5 108 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 FUKQ8N0W3 1084 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 ZCRB1Q8TBF4 217 aaKnown RBP10.7□□□□□ -0.7
SYNE1-230ENST00000495090 CASKIN2Q8WXE0 1202 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 BAP1Q92560 729 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 LRRC45Q96CN5 670 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 MTMR8Q96EF0 704 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 CCDC114Q96M63 670 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 INPP4AQ96PE3 977 aaPredicted RBP10.7□□□□□ -0.7
SYNE1-230ENST00000495090 HINFPQ9BQA5 517 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 BRIP1Q9BX63 1249 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 TRIM9Q9C026 710 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 ISCUQ9H1K1 167 aa10.7□□□□□ -0.7
SYNE1-230ENST00000495090 BHMG1C9JSJ3 638 aaPredicted RBP10.69□□□□□ -0.7
SYNE1-230ENST00000495090 GCOM1H8Y6P7 765 aaPredicted RBP10.69□□□□□ -0.7
SYNE1-230ENST00000495090 M0R2N6 131 aa10.69□□□□□ -0.7
SYNE1-230ENST00000495090 MYZAPP0CAP1 466 aa10.69□□□□□ -0.7
SYNE1-230ENST00000495090 EZRP15311 586 aaKnown RBP10.69□□□□□ -0.7
SYNE1-230ENST00000495090 SEC24CP53992 1094 aa10.69□□□□□ -0.7
SYNE1-230ENST00000495090 ANKRD20A8PQ5CZ79 823 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms