RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 HOXA10P31260 410 aaPredicted RBP6.75□□□□□ -1.33
PTCD3-219ENST00000494323 EIF4A1P60842 406 aaKnown RBP6.75□□□□□ -1.33
PTCD3-219ENST00000494323 MAP2K1Q02750 393 aaPredicted RBP6.75□□□□□ -1.33
PTCD3-219ENST00000494323 RPL6Q02878 288 aaKnown RBP6.75□□□□□ -1.33
PTCD3-219ENST00000494323 CWF19L2Q2TBE0 894 aaKnown RBP6.75□□□□□ -1.33
PTCD3-219ENST00000494323 UVSSAQ2YD98 709 aa6.75□□□□□ -1.33
PTCD3-219ENST00000494323 CYP4F22Q6NT55 531 aa6.75□□□□□ -1.33
PTCD3-219ENST00000494323 KIF6Q6ZMV9 814 aa6.75□□□□□ -1.33
PTCD3-219ENST00000494323 HDXQ7Z353 690 aa6.75□□□□□ -1.33
PTCD3-219ENST00000494323 ZNF34Q8IZ26 560 aa6.75□□□□□ -1.33
PTCD3-219ENST00000494323 WDR89Q96FK6 387 aaPredicted RBP6.75□□□□□ -1.33
PTCD3-219ENST00000494323 ABHD8Q96I13 439 aa6.75□□□□□ -1.33
PTCD3-219ENST00000494323 RBM17Q96I25 401 aaKnown RBP6.75□□□□□ -1.33
PTCD3-219ENST00000494323 GPR101Q96P66 508 aaPredicted RBP6.75□□□□□ -1.33
PTCD3-219ENST00000494323 DNAJC2Q99543 621 aaKnown RBP6.75□□□□□ -1.33
PTCD3-219ENST00000494323 RAXQ9Y2V3 346 aa6.75□□□□□ -1.33
PTCD3-219ENST00000494323 SNCAIPQ9Y6H5 919 aa6.75□□□□□ -1.33
PTCD3-219ENST00000494323 MAP3K15Q6ZN16 1313 aa6.75□□□□□ -1.33
PTCD3-219ENST00000494323 UBN2Q6ZU65 1347 aa6.75□□□□□ -1.33
PTCD3-219ENST00000494323 NUP98P52948 1817 aa6.74□□□□□ -1.33
PTCD3-219ENST00000494323 ABCC12Q96J65 1359 aa6.74□□□□□ -1.33
PTCD3-219ENST00000494323 CCDC85CA6NKD9 419 aa6.74□□□□□ -1.33
PTCD3-219ENST00000494323 DHX15O43143 795 aaKnown RBP6.74□□□□□ -1.33
PTCD3-219ENST00000494323 PPIP5K2O43314 1243 aa6.74□□□□□ -1.33
PTCD3-219ENST00000494323 ANXA1P04083 346 aa6.74□□□□□ -1.33
PTCD3-219ENST00000494323 NEFMP07197 916 aa6.74□□□□□ -1.33
PTCD3-219ENST00000494323 ATP2B1P20020 1258 aa6.74□□□□□ -1.33
PTCD3-219ENST00000494323 ID3Q02535 119 aa6.74□□□□□ -1.33
PTCD3-219ENST00000494323 COL9A2Q14055 689 aaPredicted RBP6.74□□□□□ -1.33
PTCD3-219ENST00000494323 AOC3Q16853 763 aa6.74□□□□□ -1.33
PTCD3-219ENST00000494323 ZC3H12AQ5D1E8 599 aaKnown RBP6.74□□□□□ -1.33
PTCD3-219ENST00000494323 FDX2Q6P4F2 183 aa6.74□□□□□ -1.33
PTCD3-219ENST00000494323 PNISRQ8TF01 805 aaKnown RBP6.74□□□□□ -1.33
PTCD3-219ENST00000494323 UTP4Q969X6 686 aaKnown RBP6.74□□□□□ -1.33
PTCD3-219ENST00000494323 CAPNS2Q96L46 248 aa6.74□□□□□ -1.33
PTCD3-219ENST00000494323 CRAMP1Q96RY5 1269 aa6.74□□□□□ -1.33
PTCD3-219ENST00000494323 UBP1Q9NZI7 540 aa6.74□□□□□ -1.33
PTCD3-219ENST00000494323 RNF112Q9ULX5 631 aa6.74□□□□□ -1.33
PTCD3-219ENST00000494323 PCDHGC5Q9Y5F6 944 aa6.74□□□□□ -1.33
PTCD3-219ENST00000494323 TACC3Q9Y6A5 838 aa6.74□□□□□ -1.33
PTCD3-219ENST00000494323 BCORQ6W2J9 1755 aa6.74□□□□□ -1.33
PTCD3-219ENST00000494323 ARFGEF2Q9Y6D5 1785 aa6.74□□□□□ -1.33
PTCD3-219ENST00000494323 GSC2O15499 205 aa6.73□□□□□ -1.33
PTCD3-219ENST00000494323 SART1O43290 800 aaKnown RBP6.73□□□□□ -1.33
PTCD3-219ENST00000494323 ADH5P11766 374 aa6.73□□□□□ -1.33
PTCD3-219ENST00000494323 HCLS1P14317 486 aaPredicted RBP6.73□□□□□ -1.33
PTCD3-219ENST00000494323 CRKP46108 304 aa6.73□□□□□ -1.33
PTCD3-219ENST00000494323 ERVK-24P63145 666 aa6.73□□□□□ -1.33
PTCD3-219ENST00000494323 CXCL9Q07325 125 aa6.73□□□□□ -1.33
PTCD3-219ENST00000494323 AIMP1Q12904 312 aaKnown RBP6.73□□□□□ -1.33
PTCD3-219ENST00000494323 WIPI1Q5MNZ9 446 aaPredicted RBP6.73□□□□□ -1.33
PTCD3-219ENST00000494323 DLK2Q6UY11 383 aa6.73□□□□□ -1.33
PTCD3-219ENST00000494323 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.73□□□□□ -1.33
PTCD3-219ENST00000494323 USP50Q70EL3 339 aaPredicted RBP6.73□□□□□ -1.33
PTCD3-219ENST00000494323 PPP1R42Q7Z4L9 355 aa6.73□□□□□ -1.33
PTCD3-219ENST00000494323 REC114Q7Z4M0 266 aa6.73□□□□□ -1.33
PTCD3-219ENST00000494323 NBPF11Q86T75 865 aa6.73□□□□□ -1.33
PTCD3-219ENST00000494323 SLITRK4Q8IW52 837 aa6.73□□□□□ -1.33
PTCD3-219ENST00000494323 NIM1KQ8IY84 436 aa6.73□□□□□ -1.33
PTCD3-219ENST00000494323 ARMC10Q8N2F6 343 aa6.73□□□□□ -1.33
PTCD3-219ENST00000494323 C12orf50Q8NA57 414 aaPredicted RBP6.73□□□□□ -1.33
PTCD3-219ENST00000494323 NKD1Q969G9 470 aa6.73□□□□□ -1.33
PTCD3-219ENST00000494323 ELMO3Q96BJ8 720 aa6.73□□□□□ -1.33
PTCD3-219ENST00000494323 SEC16BQ96JE7 1060 aa6.73□□□□□ -1.33
PTCD3-219ENST00000494323 PLEKHF1Q96S99 279 aa6.73□□□□□ -1.33
PTCD3-219ENST00000494323 TMX4Q9H1E5 349 aaPredicted RBP6.73□□□□□ -1.33
PTCD3-219ENST00000494323 STOML1Q9UBI4 398 aa6.73□□□□□ -1.33
PTCD3-219ENST00000494323 COL4A5P29400 1685 aa6.73□□□□□ -1.33
PTCD3-219ENST00000494323 CASP8AP2Q9UKL3 1982 aa6.73□□□□□ -1.33
PTCD3-219ENST00000494323 SHTN1A0MZ66 631 aa6.72□□□□□ -1.33
PTCD3-219ENST00000494323 TMPRSS2O15393 492 aa6.72□□□□□ -1.33
PTCD3-219ENST00000494323 TLR3O15455 904 aaKnown RBP6.72□□□□□ -1.33
PTCD3-219ENST00000494323 RAD17O75943 681 aa6.72□□□□□ -1.33
PTCD3-219ENST00000494323 CELF2O95319 508 aaKnown RBP6.72□□□□□ -1.33
PTCD3-219ENST00000494323 TIAF1O95411 115 aa6.72□□□□□ -1.33
PTCD3-219ENST00000494323 NTSR2O95665 410 aa6.72□□□□□ -1.33
PTCD3-219ENST00000494323 GTF2F1P35269 517 aaKnown RBP eCLIP6.72□□□□□ -1.33
PTCD3-219ENST00000494323 ECE1P42892 770 aa6.72□□□□□ -1.33
PTCD3-219ENST00000494323 GMPSP49915 693 aaPredicted RBP6.72□□□□□ -1.33
PTCD3-219ENST00000494323 SOX4Q06945 474 aaPredicted RBP6.72□□□□□ -1.33
PTCD3-219ENST00000494323 RBL2Q08999 1139 aa6.72□□□□□ -1.33
PTCD3-219ENST00000494323 NFE2L2Q16236 605 aa6.72□□□□□ -1.33
PTCD3-219ENST00000494323 PROSER3Q2NL68 480 aa6.72□□□□□ -1.33
PTCD3-219ENST00000494323 SEZ6Q53EL9 994 aa6.72□□□□□ -1.33
PTCD3-219ENST00000494323 SLC10A5Q5PT55 438 aa6.72□□□□□ -1.33
PTCD3-219ENST00000494323 LRFN4Q6PJG9 635 aa6.72□□□□□ -1.33
PTCD3-219ENST00000494323 DPH6Q7L8W6 267 aa6.72□□□□□ -1.33
PTCD3-219ENST00000494323 FBXO27Q8NI29 283 aa6.72□□□□□ -1.33
PTCD3-219ENST00000494323 PLPPR2Q96GM1 343 aa6.72□□□□□ -1.33
PTCD3-219ENST00000494323 FAM46AQ96IP4 442 aaKnown RBP6.72□□□□□ -1.33
PTCD3-219ENST00000494323 UTP14AQ9BVJ6 771 aaKnown RBP6.72□□□□□ -1.33
PTCD3-219ENST00000494323 GLIS2Q9BZE0 524 aaPredicted RBP6.72□□□□□ -1.33
PTCD3-219ENST00000494323 LNPKQ9C0E8 428 aa6.72□□□□□ -1.33
PTCD3-219ENST00000494323 ATXN3LQ9H3M9 355 aa6.72□□□□□ -1.33
PTCD3-219ENST00000494323 ZNF408Q9H9D4 720 aa6.72□□□□□ -1.33
PTCD3-219ENST00000494323 GPRC5DQ9NZD1 345 aa6.72□□□□□ -1.33
PTCD3-219ENST00000494323 CRIM1Q9NZV1 1036 aa6.72□□□□□ -1.33
PTCD3-219ENST00000494323 ZNRF3Q9ULT6 936 aa6.72□□□□□ -1.33
PTCD3-219ENST00000494323 ATP6V0A2Q9Y487 856 aa6.72□□□□□ -1.33
PTCD3-219ENST00000494323 ADAMTSL1Q8N6G6 1762 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms