RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 E7EWF7 191 aa12.46□□□□□ -0.41
COL6A3-214ENST00000493608 ADAMTS4O75173 837 aa12.46□□□□□ -0.41
COL6A3-214ENST00000493608 DUSP11O75319 330 aaKnown RBP12.46□□□□□ -0.41
COL6A3-214ENST00000493608 PARP1P09874 1014 aaKnown RBP12.46□□□□□ -0.41
COL6A3-214ENST00000493608 C6orf222P0C671 652 aaPredicted RBP12.46□□□□□ -0.41
COL6A3-214ENST00000493608 CALML3P27482 149 aa12.46□□□□□ -0.41
COL6A3-214ENST00000493608 SEC23AQ15436 765 aa12.46□□□□□ -0.41
COL6A3-214ENST00000493608 KCNA10Q16322 511 aa12.46□□□□□ -0.41
COL6A3-214ENST00000493608 TRIM60Q495X7 471 aa12.46□□□□□ -0.41
COL6A3-214ENST00000493608 TMEM63BQ5T3F8 832 aa12.46□□□□□ -0.41
COL6A3-214ENST00000493608 SLC30A10Q6XR72 485 aa12.46□□□□□ -0.41
COL6A3-214ENST00000493608 STOX1Q6ZVD7 989 aa12.46□□□□□ -0.41
COL6A3-214ENST00000493608 NOL8Q76FK4 1167 aaKnown RBP12.46□□□□□ -0.41
COL6A3-214ENST00000493608 CENPQQ7L2Z9 268 aaPredicted RBP12.46□□□□□ -0.41
COL6A3-214ENST00000493608 ADGRF4Q8IZF3 695 aa12.46□□□□□ -0.41
COL6A3-214ENST00000493608 CLEC4DQ8WXI8 215 aa12.46□□□□□ -0.41
COL6A3-214ENST00000493608 MAP4K1Q92918 833 aa12.46□□□□□ -0.41
COL6A3-214ENST00000493608 PRDM5Q9NQX1 630 aaPredicted RBP12.46□□□□□ -0.41
COL6A3-214ENST00000493608 PDGFCQ9NRA1 345 aa12.46□□□□□ -0.41
COL6A3-214ENST00000493608 PHF24Q9UPV7 400 aa12.46□□□□□ -0.41
COL6A3-214ENST00000493608 RBM8AQ9Y5S9 174 aaKnown RBP12.46□□□□□ -0.41
COL6A3-214ENST00000493608 A0A1W2PQ45 241 aaPredicted RBP12.45□□□□□ -0.42
COL6A3-214ENST00000493608 A0A1W2PQY0 241 aa12.45□□□□□ -0.42
COL6A3-214ENST00000493608 IFIT3O14879 490 aaKnown RBP12.45□□□□□ -0.42
COL6A3-214ENST00000493608 DHX16O60231 1041 aaKnown RBP12.45□□□□□ -0.42
COL6A3-214ENST00000493608 ACLYP53396 1101 aa12.45□□□□□ -0.42
COL6A3-214ENST00000493608 PRSS12P56730 875 aa12.45□□□□□ -0.42
COL6A3-214ENST00000493608 BEX3Q00994 111 aa12.45□□□□□ -0.42
COL6A3-214ENST00000493608 CDC37Q16543 378 aaPredicted RBP12.45□□□□□ -0.42
COL6A3-214ENST00000493608 ASPRV1Q53RT3 343 aa12.45□□□□□ -0.42
COL6A3-214ENST00000493608 KIAA1211Q6ZU35 1233 aa12.45□□□□□ -0.42
COL6A3-214ENST00000493608 FBXO16Q8IX29 292 aaPredicted RBP12.45□□□□□ -0.42
COL6A3-214ENST00000493608 KLHDC9Q8NEP7 349 aa12.45□□□□□ -0.42
COL6A3-214ENST00000493608 KCNV2Q8TDN2 545 aa12.45□□□□□ -0.42
COL6A3-214ENST00000493608 TBC1D5Q92609 795 aa12.45□□□□□ -0.42
COL6A3-214ENST00000493608 UBE2OQ9C0C9 1292 aaKnown RBP12.45□□□□□ -0.42
COL6A3-214ENST00000493608 NT5C2P49902 561 aa12.44□□□□□ -0.42
COL6A3-214ENST00000493608 ALDH5A1P51649 535 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-214ENST00000493608 TNFAIP2Q03169 654 aa12.44□□□□□ -0.42
COL6A3-214ENST00000493608 TLE2Q04725 743 aa12.44□□□□□ -0.42
COL6A3-214ENST00000493608 QRICH1Q2TAL8 776 aa12.44□□□□□ -0.42
COL6A3-214ENST00000493608 GNASQ5JWF2 1037 aa12.44□□□□□ -0.42
COL6A3-214ENST00000493608 CCSAPQ6IQ19 270 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-214ENST00000493608 TAPT1Q6NXT6 567 aa12.44□□□□□ -0.42
COL6A3-214ENST00000493608 RNF207Q6ZRF8 634 aa12.44□□□□□ -0.42
COL6A3-214ENST00000493608 SH3RF1Q7Z6J0 888 aa12.44□□□□□ -0.42
COL6A3-214ENST00000493608 RALYLQ86SE5 291 aaKnown RBP12.44□□□□□ -0.42
COL6A3-214ENST00000493608 NCOA7Q8NI08 942 aa12.44□□□□□ -0.42
COL6A3-214ENST00000493608 VTI1AQ96AJ9 217 aa12.44□□□□□ -0.42
COL6A3-214ENST00000493608 ESYT1Q9BSJ8 1104 aa12.44□□□□□ -0.42
COL6A3-214ENST00000493608 LSG1Q9H089 658 aaKnown RBP12.44□□□□□ -0.42
COL6A3-214ENST00000493608 JMJD4Q9H9V9 463 aa12.44□□□□□ -0.42
COL6A3-214ENST00000493608 CDHR5Q9HBB8 845 aa12.44□□□□□ -0.42
COL6A3-214ENST00000493608 PRKAG2Q9UGJ0 569 aa12.44□□□□□ -0.42
COL6A3-214ENST00000493608 SZT2Q5T011 3432 aa12.44□□□□□ -0.42
COL6A3-214ENST00000493608 KLRF2D3W0D1 207 aa12.43□□□□□ -0.42
COL6A3-214ENST00000493608 SOX1O00570 391 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-214ENST00000493608 DYNC1LI2O43237 492 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-214ENST00000493608 PQBP1O60828 265 aaKnown RBP12.43□□□□□ -0.42
COL6A3-214ENST00000493608 ASGR1P07306 291 aa12.43□□□□□ -0.42
COL6A3-214ENST00000493608 SMPD1P17405 629 aa12.43□□□□□ -0.42
COL6A3-214ENST00000493608 BMP8BP34820 402 aa12.43□□□□□ -0.42
COL6A3-214ENST00000493608 GJA9P57773 515 aa12.43□□□□□ -0.42
COL6A3-214ENST00000493608 RPS6P62753 249 aaKnown RBP12.43□□□□□ -0.42
COL6A3-214ENST00000493608 COL9A3Q14050 684 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-214ENST00000493608 WTAPQ15007 396 aa12.43□□□□□ -0.42
COL6A3-214ENST00000493608 SNX17Q15036 470 aa12.43□□□□□ -0.42
COL6A3-214ENST00000493608 PACS2Q86VP3 889 aa12.43□□□□□ -0.42
COL6A3-214ENST00000493608 TSEN34Q9BSV6 310 aaKnown RBP12.43□□□□□ -0.42
COL6A3-214ENST00000493608 SPC25Q9HBM1 224 aa12.43□□□□□ -0.42
COL6A3-214ENST00000493608 STARD7Q9NQZ5 370 aa12.43□□□□□ -0.42
COL6A3-214ENST00000493608 MAD2L2Q9UI95 211 aa12.43□□□□□ -0.42
COL6A3-214ENST00000493608 WDR19Q8NEZ3 1342 aa12.42□□□□□ -0.42
COL6A3-214ENST00000493608 ERICH2A1L162 156 aa12.42□□□□□ -0.42
COL6A3-214ENST00000493608 TRIM43BA6NCK2 446 aa12.42□□□□□ -0.42
COL6A3-214ENST00000493608 C3orf80F5H4A9 247 aa12.42□□□□□ -0.42
COL6A3-214ENST00000493608 CTAGE5O15320 804 aa12.42□□□□□ -0.42
COL6A3-214ENST00000493608 ANTXR2P58335 489 aa12.42□□□□□ -0.42
COL6A3-214ENST00000493608 TMEM67Q5HYA8 995 aa12.42□□□□□ -0.42
COL6A3-214ENST00000493608 FBXO11Q86XK2 927 aa12.42□□□□□ -0.42
COL6A3-214ENST00000493608 TRIM43Q96BQ3 446 aaPredicted RBP12.42□□□□□ -0.42
COL6A3-214ENST00000493608 LRCH3Q96II8 777 aa12.42□□□□□ -0.42
COL6A3-214ENST00000493608 LBHD1Q9BQE6 289 aaPredicted RBP12.42□□□□□ -0.42
COL6A3-214ENST00000493608 UPF3AQ9H1J1 476 aaKnown RBP12.42□□□□□ -0.42
COL6A3-214ENST00000493608 ANO2Q9NQ90 1003 aa12.42□□□□□ -0.42
COL6A3-214ENST00000493608 PDLIM7Q9NR12 457 aa12.42□□□□□ -0.42
COL6A3-214ENST00000493608 ADD3Q9UEY8 706 aaKnown RBP12.42□□□□□ -0.42
COL6A3-214ENST00000493608 GNEQ9Y223 722 aaKnown RBP12.42□□□□□ -0.42
COL6A3-214ENST00000493608 LRRC37A2A6NM11 1700 aa12.42□□□□□ -0.42
COL6A3-214ENST00000493608 PALM3A6NDB9 673 aaPredicted RBP12.41□□□□□ -0.42
COL6A3-214ENST00000493608 MOXD2PA6NHM9 499 aa12.41□□□□□ -0.42
COL6A3-214ENST00000493608 SLC27A2O14975 620 aa12.41□□□□□ -0.42
COL6A3-214ENST00000493608 ITGB8P26012 769 aa12.41□□□□□ -0.42
COL6A3-214ENST00000493608 SLC35G1Q2M3R5 365 aa12.41□□□□□ -0.42
COL6A3-214ENST00000493608 C1orf53Q5VUE5 145 aa12.41□□□□□ -0.42
COL6A3-214ENST00000493608 IQSEC1Q6DN90 963 aa12.41□□□□□ -0.42
COL6A3-214ENST00000493608 TLK2Q86UE8 772 aa12.41□□□□□ -0.42
COL6A3-214ENST00000493608 MB21D2Q8IYB1 491 aaPredicted RBP12.41□□□□□ -0.42
COL6A3-214ENST00000493608 PCSK9Q8NBP7 692 aaKnown RBP12.41□□□□□ -0.42
COL6A3-214ENST00000493608 IGDCC4Q8TDY8 1250 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms