RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 CRTC3Q6UUV7 619 aa5.96□□□□□ -1.46
VPS13A-212ENST00000493341 LBX2Q6XYB7 198 aa5.96□□□□□ -1.46
VPS13A-212ENST00000493341 C1orf162Q8NEQ5 155 aaPredicted RBP5.96□□□□□ -1.46
VPS13A-212ENST00000493341 PJA1Q8NG27 643 aa5.96□□□□□ -1.46
VPS13A-212ENST00000493341 NPLOC4Q8TAT6 608 aa5.96□□□□□ -1.46
VPS13A-212ENST00000493341 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.96□□□□□ -1.46
VPS13A-212ENST00000493341 UBA5Q9GZZ9 404 aa5.96□□□□□ -1.46
VPS13A-212ENST00000493341 FAM50BQ9Y247 325 aa5.96□□□□□ -1.46
VPS13A-212ENST00000493341 GIT1Q9Y2X7 761 aa5.96□□□□□ -1.46
VPS13A-212ENST00000493341 CCDC66A2RUB6 948 aa5.95□□□□□ -1.46
VPS13A-212ENST00000493341 XPOTO43592 962 aaKnown RBP5.95□□□□□ -1.46
VPS13A-212ENST00000493341 PPFIA4O75335 1185 aa5.95□□□□□ -1.46
VPS13A-212ENST00000493341 CFBP00751 764 aa5.95□□□□□ -1.46
VPS13A-212ENST00000493341 NFICP08651 508 aa5.95□□□□□ -1.46
VPS13A-212ENST00000493341 PLS3P13797 630 aa5.95□□□□□ -1.46
VPS13A-212ENST00000493341 IFNGR1P15260 489 aa5.95□□□□□ -1.46
VPS13A-212ENST00000493341 LTBRP36941 435 aa5.95□□□□□ -1.46
VPS13A-212ENST00000493341 SCAND1P57086 179 aa5.95□□□□□ -1.46
VPS13A-212ENST00000493341 NMIQ13287 307 aaPredicted RBP5.95□□□□□ -1.46
VPS13A-212ENST00000493341 RGL3Q3MIN7 710 aa5.95□□□□□ -1.46
VPS13A-212ENST00000493341 FAM47CQ5HY64 1035 aa5.95□□□□□ -1.46
VPS13A-212ENST00000493341 ACBD5Q5T8D3 534 aaPredicted RBP5.95□□□□□ -1.46
VPS13A-212ENST00000493341 BROXQ5VW32 411 aa5.95□□□□□ -1.46
VPS13A-212ENST00000493341 ANKRD34AQ69YU3 496 aa5.95□□□□□ -1.46
VPS13A-212ENST00000493341 EPM2AIP1Q7L775 607 aaPredicted RBP5.95□□□□□ -1.46
VPS13A-212ENST00000493341 CMIPQ8IY22 773 aa5.95□□□□□ -1.46
VPS13A-212ENST00000493341 CISD2Q8N5K1 135 aaKnown RBP5.95□□□□□ -1.46
VPS13A-212ENST00000493341 C2orf69Q8N8R5 385 aa5.95□□□□□ -1.46
VPS13A-212ENST00000493341 SLC5A5Q92911 643 aa5.95□□□□□ -1.46
VPS13A-212ENST00000493341 MRPL18Q9H0U6 180 aaKnown RBP5.95□□□□□ -1.46
VPS13A-212ENST00000493341 SEMA6CQ9H3T2 930 aa5.95□□□□□ -1.46
VPS13A-212ENST00000493341 ACSS3Q9H6R3 686 aa5.95□□□□□ -1.46
VPS13A-212ENST00000493341 ANLNQ9NQW6 1124 aa5.95□□□□□ -1.46
VPS13A-212ENST00000493341 CLEC1BQ9P126 229 aa5.95□□□□□ -1.46
VPS13A-212ENST00000493341 SAP30BPQ9UHR5 308 aaKnown RBP5.95□□□□□ -1.46
VPS13A-212ENST00000493341 TAGLN3Q9UI15 199 aa5.95□□□□□ -1.46
VPS13A-212ENST00000493341 DAAM1Q9Y4D1 1078 aa5.95□□□□□ -1.46
VPS13A-212ENST00000493341 AURKAO14965 403 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 IL33O95760 270 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 LTFP02788 710 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 CTSKP43235 329 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 SESN3P58005 492 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 GTF2H3Q13889 308 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 CLUL1Q15846 466 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 IGF2-ASQ6U949 168 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.94□□□□□ -1.46
VPS13A-212ENST00000493341 HSPBAP1Q96EW2 488 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 FCRL3Q96P31 734 aaPredicted RBP5.94□□□□□ -1.46
VPS13A-212ENST00000493341 OXSMQ9NWU1 459 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 KCNH3Q9ULD8 1083 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 FRMPD2Q68DX3 1309 aaPredicted RBP5.94□□□□□ -1.46
VPS13A-212ENST00000493341 FZD9O00144 591 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 DYNC1LI2O43237 492 aaPredicted RBP5.94□□□□□ -1.46
VPS13A-212ENST00000493341 SART1O43290 800 aaKnown RBP5.94□□□□□ -1.46
VPS13A-212ENST00000493341 KRT37O76014 449 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 CBX7O95931 251 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 GSNP06396 782 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 NOP2P46087 812 aaKnown RBP5.94□□□□□ -1.46
VPS13A-212ENST00000493341 PREPP48147 710 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 CDK5R2Q13319 367 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 GRM3Q14832 879 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 KIZQ2M2Z5 673 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 CDPF1Q6NVV7 123 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 DTWD2Q8NBA8 298 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 FBXO41Q8TF61 875 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 FBLIM1Q8WUP2 373 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 DIO2Q92813 273 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 E2F7Q96AV8 911 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 PSMG3-AS1Q96PY0 264 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 PPCSQ9HAB8 311 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 RRAGCQ9HB90 399 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 ZNF652Q9Y2D9 606 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 PCDHA2Q9Y5H9 948 aa5.94□□□□□ -1.46
VPS13A-212ENST00000493341 CNTNAP4Q9C0A0 1308 aa5.93□□□□□ -1.46
VPS13A-212ENST00000493341 GSTA4O15217 222 aa5.93□□□□□ -1.46
VPS13A-212ENST00000493341 GAS2O43903 313 aaKnown RBP5.93□□□□□ -1.46
VPS13A-212ENST00000493341 SAFBQ15424 915 aaKnown RBP eCLIP5.93□□□□□ -1.46
VPS13A-212ENST00000493341 OVCH1Q7RTY7 1134 aa5.93□□□□□ -1.46
VPS13A-212ENST00000493341 KSR1Q8IVT5 923 aa5.93□□□□□ -1.46
VPS13A-212ENST00000493341 AMOTL1Q8IY63 956 aa5.93□□□□□ -1.46
VPS13A-212ENST00000493341 ATG3Q9NT62 314 aa5.93□□□□□ -1.46
VPS13A-212ENST00000493341 CATSPERZQ9NTU4 200 aa5.93□□□□□ -1.46
VPS13A-212ENST00000493341 BSDC1Q9NW68 430 aaPredicted RBP5.93□□□□□ -1.46
VPS13A-212ENST00000493341 SHISA3A0PJX4 238 aa5.92□□□□□ -1.46
VPS13A-212ENST00000493341 MECP2P51608 486 aaKnown RBP5.92□□□□□ -1.46
VPS13A-212ENST00000493341 MORC3Q14149 939 aa5.92□□□□□ -1.46
VPS13A-212ENST00000493341 CLEC16AQ2KHT3 1053 aa5.92□□□□□ -1.46
VPS13A-212ENST00000493341 E4F1Q66K89 784 aaPredicted RBP5.92□□□□□ -1.46
VPS13A-212ENST00000493341 TOP6BLQ8N6T0 577 aa5.92□□□□□ -1.46
VPS13A-212ENST00000493341 RCBTB1Q8NDN9 531 aa5.92□□□□□ -1.46
VPS13A-212ENST00000493341 FBXW5Q969U6 566 aa5.92□□□□□ -1.46
VPS13A-212ENST00000493341 CHAMP1Q96JM3 812 aa5.92□□□□□ -1.46
VPS13A-212ENST00000493341 IPPKQ9H8X2 491 aa5.92□□□□□ -1.46
VPS13A-212ENST00000493341 MAN1C1Q9NR34 630 aa5.92□□□□□ -1.46
VPS13A-212ENST00000493341 DDX20Q9UHI6 824 aaKnown RBP5.92□□□□□ -1.46
VPS13A-212ENST00000493341 FAM229AH3BQW9 127 aa5.92□□□□□ -1.46
VPS13A-212ENST00000493341 APAF1O14727 1248 aa5.92□□□□□ -1.46
VPS13A-212ENST00000493341 ALX3O95076 343 aa5.92□□□□□ -1.46
VPS13A-212ENST00000493341 EOMESO95936 686 aa5.92□□□□□ -1.46
VPS13A-212ENST00000493341 ASGR2P07307 311 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms