RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 DEFB103AP81534 67 aa19.16■□□□□ 0.66
USP48-210ENST00000489108 PPARAQ07869 468 aa19.16■□□□□ 0.66
USP48-210ENST00000489108 TTBK2Q6IQ55 1244 aa19.16■□□□□ 0.66
USP48-210ENST00000489108 FAM178BQ8IXR5 827 aa19.16■□□□□ 0.66
USP48-210ENST00000489108 GJD3Q8N144 294 aa19.16■□□□□ 0.66
USP48-210ENST00000489108 SEC62Q99442 399 aaKnown RBP19.16■□□□□ 0.66
USP48-210ENST00000489108 NACAP1Q9BZK3 213 aa19.16■□□□□ 0.66
USP48-210ENST00000489108 RANBP17Q9H2T7 1088 aaKnown RBP19.16■□□□□ 0.66
USP48-210ENST00000489108 LOC102724159A0A0B4J2E5 919 aa19.15■□□□□ 0.66
USP48-210ENST00000489108 NKRFO15226 690 aaKnown RBP eCLIP19.15■□□□□ 0.66
USP48-210ENST00000489108 CALML3P27482 149 aa19.15■□□□□ 0.66
USP48-210ENST00000489108 PPP2R5BQ15173 497 aa19.15■□□□□ 0.66
USP48-210ENST00000489108 PWP2Q15269 919 aaKnown RBP19.15■□□□□ 0.66
USP48-210ENST00000489108 PTGISQ16647 500 aa19.15■□□□□ 0.66
USP48-210ENST00000489108 LRRFIP1Q32MZ4 808 aaKnown RBP19.15■□□□□ 0.66
USP48-210ENST00000489108 TSHZ3Q63HK5 1081 aa19.15■□□□□ 0.66
USP48-210ENST00000489108 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.15■□□□□ 0.66
USP48-210ENST00000489108 RAD50Q92878 1312 aa19.15■□□□□ 0.66
USP48-210ENST00000489108 TSPY2A6NKD2 308 aa19.14■□□□□ 0.65
USP48-210ENST00000489108 RBAK-RBAKDNI3L0D1 243 aa19.14■□□□□ 0.65
USP48-210ENST00000489108 ERVK-21P61565 698 aa19.14■□□□□ 0.65
USP48-210ENST00000489108 HNRNPUQ00839 825 aaKnown RBP eCLIP19.14■□□□□ 0.65
USP48-210ENST00000489108 PDE4DQ08499 809 aa19.14■□□□□ 0.65
USP48-210ENST00000489108 CCDC96Q2M329 555 aa19.14■□□□□ 0.65
USP48-210ENST00000489108 LEXMQ3ZCV2 418 aa19.14■□□□□ 0.65
USP48-210ENST00000489108 PPP4R3BQ5MIZ7 849 aa19.14■□□□□ 0.65
USP48-210ENST00000489108 SLC30A10Q6XR72 485 aa19.14■□□□□ 0.65
USP48-210ENST00000489108 UIMC1Q96RL1 719 aa19.14■□□□□ 0.65
USP48-210ENST00000489108 CTAGE1Q96RT6 745 aa19.14■□□□□ 0.65
USP48-210ENST00000489108 NAPBQ9H115 298 aa19.14■□□□□ 0.65
USP48-210ENST00000489108 TXNP10599 105 aaKnown RBP19.13■□□□□ 0.65
USP48-210ENST00000489108 IL9P15248 144 aa19.13■□□□□ 0.65
USP48-210ENST00000489108 KCNA5P22460 613 aa19.13■□□□□ 0.65
USP48-210ENST00000489108 SSTR3P32745 418 aaPredicted RBP19.13■□□□□ 0.65
USP48-210ENST00000489108 TCTN1Q2MV58 587 aa19.13■□□□□ 0.65
USP48-210ENST00000489108 GDF6Q6KF10 455 aaPredicted RBP19.13■□□□□ 0.65
USP48-210ENST00000489108 CAGE1Q8TC20 777 aa19.13■□□□□ 0.65
USP48-210ENST00000489108 AFAP1L1Q8TED9 768 aa19.13■□□□□ 0.65
USP48-210ENST00000489108 SCFD2Q8WU76 684 aa19.13■□□□□ 0.65
USP48-210ENST00000489108 CLEC4DQ8WXI8 215 aa19.13■□□□□ 0.65
USP48-210ENST00000489108 TGS1Q96RS0 853 aaKnown RBP19.13■□□□□ 0.65
USP48-210ENST00000489108 RAD9AQ99638 391 aa19.13■□□□□ 0.65
USP48-210ENST00000489108 LINC01553A4QN01 128 aa19.12■□□□□ 0.65
USP48-210ENST00000489108 GJB5O95377 273 aa19.12■□□□□ 0.65
USP48-210ENST00000489108 SELPP16109 830 aa19.12■□□□□ 0.65
USP48-210ENST00000489108 CTDSPL2Q05D32 466 aa19.12■□□□□ 0.65
USP48-210ENST00000489108 SYDE2Q5VT97 1194 aa19.12■□□□□ 0.65
USP48-210ENST00000489108 CNKSR3Q6P9H4 555 aa19.12■□□□□ 0.65
USP48-210ENST00000489108 BTNL9Q6UXG8 535 aa19.12■□□□□ 0.65
USP48-210ENST00000489108 RNF207Q6ZRF8 634 aa19.12■□□□□ 0.65
USP48-210ENST00000489108 CCDC155Q8N6L0 562 aa19.12■□□□□ 0.65
USP48-210ENST00000489108 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.12■□□□□ 0.65
USP48-210ENST00000489108 NBNO60934 754 aa19.11■□□□□ 0.65
USP48-210ENST00000489108 ARIH2O95376 493 aa19.11■□□□□ 0.65
USP48-210ENST00000489108 EDNRBP24530 442 aa19.11■□□□□ 0.65
USP48-210ENST00000489108 MRE11P49959 708 aa19.11■□□□□ 0.65
USP48-210ENST00000489108 PTCRAQ6ISU1 281 aaPredicted RBP19.11■□□□□ 0.65
USP48-210ENST00000489108 FAM117BQ6P1L5 589 aa19.11■□□□□ 0.65
USP48-210ENST00000489108 LRRC8DQ7L1W4 858 aa19.11■□□□□ 0.65
USP48-210ENST00000489108 DCAF4Q8WV16 495 aa19.11■□□□□ 0.65
USP48-210ENST00000489108 DHX38Q92620 1227 aaKnown RBP19.11■□□□□ 0.65
USP48-210ENST00000489108 SIP14410 1827 aa19.1■□□□□ 0.65
USP48-210ENST00000489108 RANBP6O60518 1105 aaKnown RBP19.1■□□□□ 0.65
USP48-210ENST00000489108 CXCL10P02778 98 aa19.1■□□□□ 0.65
USP48-210ENST00000489108 ALADP13716 330 aa19.1■□□□□ 0.65
USP48-210ENST00000489108 NOVP48745 357 aa19.1■□□□□ 0.65
USP48-210ENST00000489108 RPS6P62753 249 aaKnown RBP19.1■□□□□ 0.65
USP48-210ENST00000489108 AFG1LQ8WV93 481 aa19.1■□□□□ 0.65
USP48-210ENST00000489108 GPCPD1Q9NPB8 672 aa19.1■□□□□ 0.65
USP48-210ENST00000489108 FRMPD2Q68DX3 1309 aaPredicted RBP19.09■□□□□ 0.65
USP48-210ENST00000489108 ABHD14A-ACY1A0A1B0GW23 586 aa19.09■□□□□ 0.65
USP48-210ENST00000489108 GRXCR2A6NFK2 248 aa19.09■□□□□ 0.65
USP48-210ENST00000489108 CKBP12277 381 aa19.09■□□□□ 0.65
USP48-210ENST00000489108 CSPP1Q1MSJ5 1256 aa19.09■□□□□ 0.65
USP48-210ENST00000489108 SESTD1Q86VW0 696 aa19.09■□□□□ 0.65
USP48-210ENST00000489108 KAT2BQ92831 832 aa19.09■□□□□ 0.65
USP48-210ENST00000489108 GPATCH3Q96I76 525 aa19.09■□□□□ 0.65
USP48-210ENST00000489108 CRBNQ96SW2 442 aa19.09■□□□□ 0.65
USP48-210ENST00000489108 MPHOSPH6Q99547 160 aaKnown RBP19.09■□□□□ 0.65
USP48-210ENST00000489108 PARNO95453 639 aaKnown RBP19.08■□□□□ 0.64
USP48-210ENST00000489108 CCDC62Q6P9F0 684 aa19.08■□□□□ 0.64
USP48-210ENST00000489108 DNERQ8NFT8 737 aa19.08■□□□□ 0.64
USP48-210ENST00000489108 C17orf80Q9BSJ5 609 aa19.08■□□□□ 0.64
USP48-210ENST00000489108 CHMP4BQ9H444 224 aaKnown RBP19.08■□□□□ 0.64
USP48-210ENST00000489108 MMP3P08254 477 aa19.07■□□□□ 0.64
USP48-210ENST00000489108 NHLH1Q02575 133 aa19.07■□□□□ 0.64
USP48-210ENST00000489108 RBL2Q08999 1139 aa19.07■□□□□ 0.64
USP48-210ENST00000489108 IKBKEQ14164 716 aa19.07■□□□□ 0.64
USP48-210ENST00000489108 LY6KQ17RY6 165 aa19.07■□□□□ 0.64
USP48-210ENST00000489108 FBXO22Q8NEZ5 403 aa19.07■□□□□ 0.64
USP48-210ENST00000489108 FBXL18Q96ME1 805 aa19.07■□□□□ 0.64
USP48-210ENST00000489108 FOXP2O15409 715 aa19.06■□□□□ 0.64
USP48-210ENST00000489108 ZMYM1Q5SVZ6 1142 aa19.06■□□□□ 0.64
USP48-210ENST00000489108 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.06■□□□□ 0.643e-9■□□□□ 9.2
USP48-210ENST00000489108 CHST3Q7LGC8 479 aa19.06■□□□□ 0.64
USP48-210ENST00000489108 NEK9Q8TD19 979 aa19.06■□□□□ 0.64
USP48-210ENST00000489108 TMEM47Q9BQJ4 181 aa19.06■□□□□ 0.64
USP48-210ENST00000489108 HDAC6Q9UBN7 1215 aa19.06■□□□□ 0.64
USP48-210ENST00000489108 GTF2IRD1Q9UHL9 959 aa19.06■□□□□ 0.64
USP48-210ENST00000489108 POTEB3A0JP26 581 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms