RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 OPLAHO14841 1288 aa26.74■■□□□ 1.87
COL9A3-213ENST00000489045 MFSD5Q6N075 450 aa26.74■■□□□ 1.87
COL9A3-213ENST00000489045 IGDCC4Q8TDY8 1250 aa26.74■■□□□ 1.87
COL9A3-213ENST00000489045 COPS5Q92905 334 aa26.74■■□□□ 1.87
COL9A3-213ENST00000489045 POLR3EQ9NVU0 708 aa26.74■■□□□ 1.87
COL9A3-213ENST00000489045 SCN10AQ9Y5Y9 1956 aa26.73■■□□□ 1.87
COL9A3-213ENST00000489045 ARIH2O95376 493 aa26.73■■□□□ 1.87
COL9A3-213ENST00000489045 MYL3P08590 195 aa26.73■■□□□ 1.87
COL9A3-213ENST00000489045 TXNP10599 105 aaKnown RBP26.73■■□□□ 1.87
COL9A3-213ENST00000489045 PURAQ00577 322 aaKnown RBP26.73■■□□□ 1.87
COL9A3-213ENST00000489045 TTLL4Q14679 1199 aa26.73■■□□□ 1.87
COL9A3-213ENST00000489045 CATIPQ7Z7H3 387 aa26.73■■□□□ 1.87
COL9A3-213ENST00000489045 RNPC3Q96LT9 517 aaKnown RBP26.73■■□□□ 1.87
COL9A3-213ENST00000489045 PIGSQ96S52 555 aa26.73■■□□□ 1.87
COL9A3-213ENST00000489045 PPP1R12CQ9BZL4 782 aa26.73■■□□□ 1.87
COL9A3-213ENST00000489045 RIOX1Q9H6W3 641 aa26.73■■□□□ 1.87
COL9A3-213ENST00000489045 MTMR10Q9NXD2 777 aa26.73■■□□□ 1.87
COL9A3-213ENST00000489045 PCDHA1Q9Y5I3 950 aa26.73■■□□□ 1.87
COL9A3-213ENST00000489045 EIF2AK2P19525 551 aaKnown RBP26.72■■□□□ 1.87
COL9A3-213ENST00000489045 HSD17B4P51659 736 aa26.72■■□□□ 1.87
COL9A3-213ENST00000489045 BMP2KLQ5H9B9 411 aa26.72■■□□□ 1.87
COL9A3-213ENST00000489045 ARHGEF16Q5VV41 709 aa26.72■■□□□ 1.87
COL9A3-213ENST00000489045 IWS1Q96ST2 819 aa26.72■■□□□ 1.87
COL9A3-213ENST00000489045 SEZ6LQ9BYH1 1024 aa26.72■■□□□ 1.87
COL9A3-213ENST00000489045 SLC27A2O14975 620 aa26.71■■□□□ 1.87
COL9A3-213ENST00000489045 CYTH3O43739 400 aa26.71■■□□□ 1.87
COL9A3-213ENST00000489045 GHRHRQ02643 423 aa26.71■■□□□ 1.87
COL9A3-213ENST00000489045 STXBP2Q15833 593 aa26.71■■□□□ 1.87
COL9A3-213ENST00000489045 TRPV6Q9H1D0 765 aa26.71■■□□□ 1.87
COL9A3-213ENST00000489045 LY9Q9HBG7 655 aa26.71■■□□□ 1.87
COL9A3-213ENST00000489045 ANO2Q9NQ90 1003 aa26.71■■□□□ 1.87
COL9A3-213ENST00000489045 GPHNQ9NQX3 736 aaPredicted RBP26.71■■□□□ 1.87
COL9A3-213ENST00000489045 PRC1O43663 620 aa26.7■■□□□ 1.86
COL9A3-213ENST00000489045 PPIGQ13427 754 aaKnown RBP eCLIP26.7■■□□□ 1.861e-23■■■□□ 17.5
COL9A3-213ENST00000489045 BRDTQ58F21 947 aaPredicted RBP26.7■■□□□ 1.86
COL9A3-213ENST00000489045 FAM109BQ6ICB4 259 aaPredicted RBP26.7■■□□□ 1.86
COL9A3-213ENST00000489045 CASC1Q6TDU7 716 aa26.7■■□□□ 1.86
COL9A3-213ENST00000489045 SEPT14Q6ZU15 432 aa26.7■■□□□ 1.86
COL9A3-213ENST00000489045 PXMP2Q9NR77 195 aa26.7■■□□□ 1.86
COL9A3-213ENST00000489045 MYH7BA7E2Y1 1941 aa26.7■■□□□ 1.86
COL9A3-213ENST00000489045 B4GALT4O60513 344 aa26.69■■□□□ 1.86
COL9A3-213ENST00000489045 CSF2RAP15509 400 aa26.69■■□□□ 1.86
COL9A3-213ENST00000489045 CCDC62Q6P9F0 684 aa26.69■■□□□ 1.86
COL9A3-213ENST00000489045 ZNF654Q8IZM8 581 aa26.69■■□□□ 1.86
COL9A3-213ENST00000489045 TMEM199Q8N511 208 aa26.69■■□□□ 1.86
COL9A3-213ENST00000489045 MTG1Q9BT17 334 aaPredicted RBP26.69■■□□□ 1.86
COL9A3-213ENST00000489045 MYL10Q9BUA6 226 aa26.69■■□□□ 1.86
COL9A3-213ENST00000489045 HIPK3Q9H422 1215 aa26.69■■□□□ 1.86
COL9A3-213ENST00000489045 COL6A3P12111 3177 aa26.68■■□□□ 1.86
COL9A3-213ENST00000489045 A6NJR5 290 aa26.68■■□□□ 1.86
COL9A3-213ENST00000489045 CYP2C18P33260 490 aa26.68■■□□□ 1.86
COL9A3-213ENST00000489045 MCM5P33992 734 aa26.68■■□□□ 1.86
COL9A3-213ENST00000489045 SMAD3P84022 425 aaKnown RBP26.68■■□□□ 1.86
COL9A3-213ENST00000489045 TRAF1Q13077 416 aa26.68■■□□□ 1.86
COL9A3-213ENST00000489045 COL9A3Q14050 684 aaPredicted RBP26.68■■□□□ 1.86
COL9A3-213ENST00000489045 NECTIN1Q15223 517 aa26.68■■□□□ 1.86
COL9A3-213ENST00000489045 CREB3L3Q68CJ9 461 aa26.68■■□□□ 1.86
COL9A3-213ENST00000489045 BUD13Q9BRD0 619 aaKnown RBP eCLIP26.68■■□□□ 1.861e-11■□□□□ 10.6
COL9A3-213ENST00000489045 MTA3Q9BTC8 594 aa26.68■■□□□ 1.86
COL9A3-213ENST00000489045 ALDH8A1Q9H2A2 487 aaPredicted RBP26.68■■□□□ 1.86
COL9A3-213ENST00000489045 MAP3K20Q9NYL2 800 aaKnown RBP26.68■■□□□ 1.86
COL9A3-213ENST00000489045 UMODL1Q5DID0 1318 aa26.67■■□□□ 1.86
COL9A3-213ENST00000489045 PNMA6FA0A0J9YX94 578 aa26.67■■□□□ 1.86
COL9A3-213ENST00000489045 DDAH1O94760 285 aa26.67■■□□□ 1.86
COL9A3-213ENST00000489045 NR3C2P08235 984 aa26.67■■□□□ 1.86
COL9A3-213ENST00000489045 HOXA13P31271 388 aaPredicted RBP26.67■■□□□ 1.86
COL9A3-213ENST00000489045 LY6KQ17RY6 165 aa26.67■■□□□ 1.86
COL9A3-213ENST00000489045 ZNF697Q5TEC3 545 aa26.67■■□□□ 1.86
COL9A3-213ENST00000489045 FAM161BQ96MY7 647 aa26.67■■□□□ 1.86
COL9A3-213ENST00000489045 SH2B2O14492 632 aaPredicted RBP26.66■■□□□ 1.86
COL9A3-213ENST00000489045 C16orf59Q7L2K0 433 aa26.66■■□□□ 1.86
COL9A3-213ENST00000489045 SAMD3Q8N6K7 520 aa26.66■■□□□ 1.86
COL9A3-213ENST00000489045 CTCFLQ8NI51 663 aaPredicted RBP26.66■■□□□ 1.86
COL9A3-213ENST00000489045 PIBF1Q8WXW3 757 aa26.66■■□□□ 1.86
COL9A3-213ENST00000489045 TMEM87BQ96K49 555 aa26.66■■□□□ 1.86
COL9A3-213ENST00000489045 MAP3K14Q99558 947 aa26.66■■□□□ 1.86
COL9A3-213ENST00000489045 PDCD2LQ9BRP1 358 aa26.66■■□□□ 1.86
COL9A3-213ENST00000489045 KPNA6O60684 536 aa26.65■■□□□ 1.86
COL9A3-213ENST00000489045 EIF3JO75822 258 aaKnown RBP26.65■■□□□ 1.86
COL9A3-213ENST00000489045 GH1P01241 217 aa26.65■■□□□ 1.86
COL9A3-213ENST00000489045 ARHGAP1Q07960 439 aa26.65■■□□□ 1.86
COL9A3-213ENST00000489045 TMEM240Q5SV17 173 aa26.65■■□□□ 1.86
COL9A3-213ENST00000489045 NFXL1Q6ZNB6 911 aa26.65■■□□□ 1.86
COL9A3-213ENST00000489045 NOC4LQ9BVI4 516 aaKnown RBP26.65■■□□□ 1.86
COL9A3-213ENST00000489045 TRMT13Q9NUP7 481 aaKnown RBP26.65■■□□□ 1.86
COL9A3-213ENST00000489045 GCOM1H8Y6P7 765 aaPredicted RBP26.64■■□□□ 1.86
COL9A3-213ENST00000489045 MMP3P08254 477 aa26.64■■□□□ 1.86
COL9A3-213ENST00000489045 POLR2MP0CAP2 368 aa26.64■■□□□ 1.86
COL9A3-213ENST00000489045 ACRP10323 421 aa26.64■■□□□ 1.86
COL9A3-213ENST00000489045 KIF5BP33176 963 aa26.64■■□□□ 1.86
COL9A3-213ENST00000489045 NBPF20Q3BBV1 942 aa26.64■■□□□ 1.86
COL9A3-213ENST00000489045 PPP1R13LQ8WUF5 828 aa26.64■■□□□ 1.86
COL9A3-213ENST00000489045 AFG1LQ8WV93 481 aa26.64■■□□□ 1.86
COL9A3-213ENST00000489045 SPZ1Q9BXG8 430 aa26.64■■□□□ 1.86
COL9A3-213ENST00000489045 STXBP5LQ9Y2K9 1186 aa26.64■■□□□ 1.86
COL9A3-213ENST00000489045 MRVI1Q9Y6F6 885 aa26.64■■□□□ 1.86
COL9A3-213ENST00000489045 CCDC69A6NI79 296 aa26.63■■□□□ 1.85
COL9A3-213ENST00000489045 MYCLP12524 364 aaPredicted RBP26.63■■□□□ 1.85
COL9A3-213ENST00000489045 PGM5Q15124 567 aa26.63■■□□□ 1.85
COL9A3-213ENST00000489045 FAM47CQ5HY64 1035 aa26.63■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms