RNA–Protein interactions for RNA: ENST00000488571.1

SNU13-208, Transcript of small nuclear ribonucleoprotein 13, human

TSL 5

Gene SNU13, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNU13-208	ENST00000488571	MRPS5	P82675	430 aa	Known RBP	13.42	□□□□□ -0.26
SNU13-208	ENST00000488571	PURA	Q00577	322 aa	Known RBP	13.42	□□□□□ -0.26
SNU13-208	ENST00000488571	BAAT	Q14032	418 aa	Predicted RBP	13.42	□□□□□ -0.26
SNU13-208	ENST00000488571	BTNL9	Q6UXG8	535 aa		13.42	□□□□□ -0.26
SNU13-208	ENST00000488571	ADAMTS19	Q8TE59	1207 aa		13.42	□□□□□ -0.26
SNU13-208	ENST00000488571	DCAF4	Q8WV16	495 aa		13.42	□□□□□ -0.26
SNU13-208	ENST00000488571	WDR11	Q9BZH6	1224 aa		13.42	□□□□□ -0.26
SNU13-208	ENST00000488571	SLC4A7	Q9Y6M7	1214 aa		13.42	□□□□□ -0.26
SNU13-208	ENST00000488571	RBM47	A0AV96	593 aa	Known RBP	13.41	□□□□□ -0.26
SNU13-208	ENST00000488571	ORC4	O43929	436 aa		13.41	□□□□□ -0.26
SNU13-208	ENST00000488571	RANBP6	O60518	1105 aa	Known RBP	13.41	□□□□□ -0.26
SNU13-208	ENST00000488571	CYP2C9	P11712	490 aa		13.41	□□□□□ -0.26
SNU13-208	ENST00000488571	MX1	P20591	662 aa		13.41	□□□□□ -0.26
SNU13-208	ENST00000488571	COL9A1	P20849	921 aa		13.41	□□□□□ -0.26
SNU13-208	ENST00000488571	TTLL4	Q14679	1199 aa		13.41	□□□□□ -0.26
SNU13-208	ENST00000488571	CCDC96	Q2M329	555 aa		13.41	□□□□□ -0.26
SNU13-208	ENST00000488571	PPP2R2D	Q66LE6	453 aa		13.41	□□□□□ -0.26
SNU13-208	ENST00000488571	SLC30A10	Q6XR72	485 aa		13.41	□□□□□ -0.26
SNU13-208	ENST00000488571	RPUSD2	Q8IZ73	545 aa	Known RBP	13.41	□□□□□ -0.26
SNU13-208	ENST00000488571	FBXO22	Q8NEZ5	403 aa		13.41	□□□□□ -0.26
SNU13-208	ENST00000488571	MFRP	Q9BY79	579 aa		13.41	□□□□□ -0.26
SNU13-208	ENST00000488571	ADD3	Q9UEY8	706 aa	Known RBP	13.41	□□□□□ -0.26
SNU13-208	ENST00000488571	PCDHA11	Q9Y5I1	949 aa		13.41	□□□□□ -0.26
SNU13-208	ENST00000488571	TANC1	Q9C0D5	1861 aa		13.41	□□□□□ -0.26
SNU13-208	ENST00000488571	TRANK1	O15050	2925 aa		13.41	□□□□□ -0.26
SNU13-208	ENST00000488571	TNKS	O95271	1327 aa		13.4	□□□□□ -0.26
SNU13-208	ENST00000488571	LOC102724159	A0A0B4J2E5	919 aa		13.4	□□□□□ -0.26
SNU13-208	ENST00000488571	ATP2A2	P16615	1042 aa	Known RBP	13.4	□□□□□ -0.26
SNU13-208	ENST00000488571	PWP2	Q15269	919 aa	Known RBP	13.4	□□□□□ -0.26
SNU13-208	ENST00000488571	SYDE2	Q5VT97	1194 aa		13.4	□□□□□ -0.26
SNU13-208	ENST00000488571	CLEC4D	Q8WXI8	215 aa		13.4	□□□□□ -0.26
SNU13-208	ENST00000488571	POLR3E	Q9NVU0	708 aa		13.4	□□□□□ -0.26
SNU13-208	ENST00000488571	FRMPD2	Q68DX3	1309 aa	Predicted RBP	13.39	□□□□□ -0.27
SNU13-208	ENST00000488571	PTPDC1	A2A3K4	754 aa		13.39	□□□□□ -0.27
SNU13-208	ENST00000488571	ZBBX	A8MT70	800 aa		13.39	□□□□□ -0.27
SNU13-208	ENST00000488571	PFKM	P08237	780 aa		13.39	□□□□□ -0.27
SNU13-208	ENST00000488571	MYL3	P08590	195 aa		13.39	□□□□□ -0.27
SNU13-208	ENST00000488571	CPT1A	P50416	773 aa		13.39	□□□□□ -0.27
SNU13-208	ENST00000488571	ALX1	Q15699	326 aa		13.39	□□□□□ -0.27
SNU13-208	ENST00000488571	TMEM92	Q6UXU6	159 aa		13.39	□□□□□ -0.27
SNU13-208	ENST00000488571	PPP1R13L	Q8WUF5	828 aa		13.39	□□□□□ -0.27
SNU13-208	ENST00000488571	UHRF1	Q96T88	793 aa	Predicted RBP	13.39	□□□□□ -0.27
SNU13-208	ENST00000488571	TMEM47	Q9BQJ4	181 aa		13.39	□□□□□ -0.27
SNU13-208	ENST00000488571	GPCPD1	Q9NPB8	672 aa		13.39	□□□□□ -0.27
SNU13-208	ENST00000488571	RAPGEFL1	Q9UHV5	662 aa		13.39	□□□□□ -0.27
SNU13-208	ENST00000488571	PTPRS	Q13332	1948 aa		13.39	□□□□□ -0.27
SNU13-208	ENST00000488571	TCF20	Q9UGU0	1960 aa	Known RBP	13.38	□□□□□ -0.27
SNU13-208	ENST00000488571	BDP1	A6H8Y1	2624 aa		13.38	□□□□□ -0.27
SNU13-208	ENST00000488571	NCOR1	O75376	2440 aa		13.38	□□□□□ -0.27
SNU13-208	ENST00000488571	SUPT20HL2	P0C7V6	817 aa		13.38	□□□□□ -0.27
SNU13-208	ENST00000488571	PDHB	P11177	359 aa		13.38	□□□□□ -0.27
SNU13-208	ENST00000488571	TOP1	P11387	765 aa	Known RBP	13.38	□□□□□ -0.27
SNU13-208	ENST00000488571	EDNRB	P24530	442 aa		13.38	□□□□□ -0.27
SNU13-208	ENST00000488571	CALML3	P27482	149 aa		13.38	□□□□□ -0.27
SNU13-208	ENST00000488571	NBPF20	Q3BBV1	942 aa		13.38	□□□□□ -0.27
SNU13-208	ENST00000488571	DEFB128	Q7Z7B8	93 aa		13.38	□□□□□ -0.27
SNU13-208	ENST00000488571	OR6J1	Q8NGC5	347 aa		13.38	□□□□□ -0.27
SNU13-208	ENST00000488571	MTG1	Q9BT17	334 aa	Predicted RBP	13.38	□□□□□ -0.27
SNU13-208	ENST00000488571	TCP11L1	Q9NUJ3	509 aa		13.38	□□□□□ -0.27
SNU13-208	ENST00000488571	TET1	Q8NFU7	2136 aa		13.37	□□□□□ -0.27
SNU13-208	ENST00000488571		A0A0D9SFI3	127 aa		13.37	□□□□□ -0.27
SNU13-208	ENST00000488571	EPOP	A6NHQ4	379 aa		13.37	□□□□□ -0.27
SNU13-208	ENST00000488571		A6NJR5	290 aa		13.37	□□□□□ -0.27
SNU13-208	ENST00000488571	RFXAP	O00287	272 aa		13.37	□□□□□ -0.27
SNU13-208	ENST00000488571	ARHGEF15	O94989	841 aa		13.37	□□□□□ -0.27
SNU13-208	ENST00000488571	FGA	P02671	866 aa		13.37	□□□□□ -0.27
SNU13-208	ENST00000488571	CA3	P07451	260 aa		13.37	□□□□□ -0.27
SNU13-208	ENST00000488571	SNHG28	P0DPA3	235 aa		13.37	□□□□□ -0.27
SNU13-208	ENST00000488571	BMP1	P13497	986 aa		13.37	□□□□□ -0.27
SNU13-208	ENST00000488571	POU3F3	P20264	500 aa	Predicted RBP	13.37	□□□□□ -0.27
SNU13-208	ENST00000488571	RPS6	P62753	249 aa	Known RBP	13.37	□□□□□ -0.27
SNU13-208	ENST00000488571	TFF2	Q03403	129 aa		13.37	□□□□□ -0.27
SNU13-208	ENST00000488571	TMEM67	Q5HYA8	995 aa		13.37	□□□□□ -0.27
SNU13-208	ENST00000488571	RRP12	Q5JTH9	1297 aa	Known RBP	13.37	□□□□□ -0.27
SNU13-208	ENST00000488571	RNF207	Q6ZRF8	634 aa		13.37	□□□□□ -0.27
SNU13-208	ENST00000488571	MICALL1	Q8N3F8	863 aa		13.37	□□□□□ -0.27
SNU13-208	ENST00000488571	COPS5	Q92905	334 aa		13.37	□□□□□ -0.27
SNU13-208	ENST00000488571	FAM227B	Q96M60	508 aa		13.37	□□□□□ -0.27
SNU13-208	ENST00000488571	NECAB3	Q96P71	396 aa	Predicted RBP	13.37	□□□□□ -0.27
SNU13-208	ENST00000488571	HELLS	Q9NRZ9	838 aa		13.37	□□□□□ -0.27
SNU13-208	ENST00000488571	TOMM22	Q9NS69	142 aa		13.37	□□□□□ -0.27
SNU13-208	ENST00000488571	PRRC2B	Q5JSZ5	2229 aa	Known RBP	13.37	□□□□□ -0.27
SNU13-208	ENST00000488571	NKRF	O15226	690 aa	Known RBP eCLIP	13.36	□□□□□ -0.27
SNU13-208	ENST00000488571	ARIH2	O95376	493 aa		13.36	□□□□□ -0.27
SNU13-208	ENST00000488571	KCNQ1	P51787	676 aa		13.36	□□□□□ -0.27
SNU13-208	ENST00000488571	PDE4D	Q08499	809 aa		13.36	□□□□□ -0.27
SNU13-208	ENST00000488571	ZNF543	Q08ER8	600 aa		13.36	□□□□□ -0.27
SNU13-208	ENST00000488571	PPP2R5B	Q15173	497 aa		13.36	□□□□□ -0.27
SNU13-208	ENST00000488571	FAM47C	Q5HY64	1035 aa		13.36	□□□□□ -0.27
SNU13-208	ENST00000488571	NFRKB	Q6P4R8	1299 aa		13.36	□□□□□ -0.27
SNU13-208	ENST00000488571	ZNF710	Q8N1W2	664 aa		13.36	□□□□□ -0.27
SNU13-208	ENST00000488571	SCFD2	Q8WU76	684 aa		13.36	□□□□□ -0.27
SNU13-208	ENST00000488571	EVI5L	Q96CN4	794 aa		13.36	□□□□□ -0.27
SNU13-208	ENST00000488571	GPHN	Q9NQX3	736 aa	Predicted RBP	13.36	□□□□□ -0.27
SNU13-208	ENST00000488571	MTCH2	Q9Y6C9	303 aa		13.36	□□□□□ -0.27
SNU13-208	ENST00000488571	ZMYM6	O95789	1325 aa		13.36	□□□□□ -0.27
SNU13-208	ENST00000488571	WDR19	Q8NEZ3	1342 aa		13.36	□□□□□ -0.27
SNU13-208	ENST00000488571	COL4A4	P53420	1690 aa	Predicted RBP	13.35	□□□□□ -0.27
SNU13-208	ENST00000488571	IQCF3	P0C7M6	154 aa		13.35	□□□□□ -0.27
SNU13-208	ENST00000488571	HSPD1	P10809	573 aa	Known RBP	13.35	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms