RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	SWAP70	Q9UH65	585 aa		10.33	□□□□□ -0.76
USP4-213	ENST00000488520	CHD9	Q3L8U1	2897 aa		10.33	□□□□□ -0.76
USP4-213	ENST00000488520	MYH6	P13533	1939 aa		10.33	□□□□□ -0.76
USP4-213	ENST00000488520	GRXCR1	A8MXD5	290 aa		10.32	□□□□□ -0.76
USP4-213	ENST00000488520	DCDC2C	A8MYV0	355 aa		10.32	□□□□□ -0.76
USP4-213	ENST00000488520	ADAMTS4	O75173	837 aa		10.32	□□□□□ -0.76
USP4-213	ENST00000488520	MBD4	O95243	580 aa		10.32	□□□□□ -0.76
USP4-213	ENST00000488520	EEF2	P13639	858 aa	Known RBP	10.32	□□□□□ -0.76
USP4-213	ENST00000488520	AKR1A1	P14550	325 aa		10.32	□□□□□ -0.76
USP4-213	ENST00000488520	CTH	P32929	405 aa		10.32	□□□□□ -0.76
USP4-213	ENST00000488520	CDK8	P49336	464 aa		10.32	□□□□□ -0.76
USP4-213	ENST00000488520	ACLY	P53396	1101 aa		10.32	□□□□□ -0.76
USP4-213	ENST00000488520	KCNA10	Q16322	511 aa		10.32	□□□□□ -0.76
USP4-213	ENST00000488520	FAM83B	Q5T0W9	1011 aa		10.32	□□□□□ -0.76
USP4-213	ENST00000488520	CWC27	Q6UX04	472 aa	Known RBP	10.32	□□□□□ -0.76
USP4-213	ENST00000488520	CCDC129	Q6ZRS4	1044 aa		10.32	□□□□□ -0.76
USP4-213	ENST00000488520	RIOX2	Q8IUF8	465 aa		10.32	□□□□□ -0.76
USP4-213	ENST00000488520	STK11IP	Q8N1F8	1099 aa		10.32	□□□□□ -0.76
USP4-213	ENST00000488520	VTI1A	Q96AJ9	217 aa		10.32	□□□□□ -0.76
USP4-213	ENST00000488520	TIFA	Q96CG3	184 aa		10.32	□□□□□ -0.76
USP4-213	ENST00000488520	NACAP1	Q9BZK3	213 aa		10.32	□□□□□ -0.76
USP4-213	ENST00000488520	RAPGEFL1	Q9UHV5	662 aa		10.32	□□□□□ -0.76
USP4-213	ENST00000488520	ADAMTS5	Q9UNA0	930 aa		10.32	□□□□□ -0.76
USP4-213	ENST00000488520	SLC4A4	Q9Y6R1	1079 aa		10.32	□□□□□ -0.76
USP4-213	ENST00000488520	MYH7B	A7E2Y1	1941 aa		10.32	□□□□□ -0.76
USP4-213	ENST00000488520	LRRC37A2	A6NM11	1700 aa		10.32	□□□□□ -0.76
USP4-213	ENST00000488520	SYNRG	Q9UMZ2	1314 aa		10.32	□□□□□ -0.76
USP4-213	ENST00000488520	PTPRS	Q13332	1948 aa		10.31	□□□□□ -0.76
USP4-213	ENST00000488520	CHD7	Q9P2D1	2997 aa		10.31	□□□□□ -0.76
USP4-213	ENST00000488520	TMEM265	A0A087WTH1	108 aa		10.31	□□□□□ -0.76
USP4-213	ENST00000488520	MYADML2	A6NDP7	307 aa		10.31	□□□□□ -0.76
USP4-213	ENST00000488520	USP17L12	C9JPN9	530 aa		10.31	□□□□□ -0.76
USP4-213	ENST00000488520	USP17L21	D6R901	530 aa		10.31	□□□□□ -0.76
USP4-213	ENST00000488520	VWA5A	O00534	786 aa		10.31	□□□□□ -0.76
USP4-213	ENST00000488520	TIMP1	P01033	207 aa		10.31	□□□□□ -0.76
USP4-213	ENST00000488520	CHGB	P05060	677 aa		10.31	□□□□□ -0.76
USP4-213	ENST00000488520	GSPT1	P15170	499 aa	Known RBP	10.31	□□□□□ -0.76
USP4-213	ENST00000488520	CCDC85B	Q15834	202 aa	Predicted RBP	10.31	□□□□□ -0.76
USP4-213	ENST00000488520	ZMYM1	Q5SVZ6	1142 aa		10.31	□□□□□ -0.76
USP4-213	ENST00000488520	SKAP1	Q86WV1	359 aa		10.31	□□□□□ -0.76
USP4-213	ENST00000488520	NUP133	Q8WUM0	1156 aa		10.31	□□□□□ -0.76
USP4-213	ENST00000488520	MRGPRX2	Q96LB1	330 aa		10.31	□□□□□ -0.76
USP4-213	ENST00000488520	NUP88	Q99567	741 aa	Predicted RBP	10.31	□□□□□ -0.76
USP4-213	ENST00000488520	PRDM12	Q9H4Q4	367 aa		10.31	□□□□□ -0.76
USP4-213	ENST00000488520	NRBP1	Q9UHY1	535 aa		10.31	□□□□□ -0.76
USP4-213	ENST00000488520	ZHX1	Q9UKY1	873 aa	Predicted RBP	10.31	□□□□□ -0.76
USP4-213	ENST00000488520	ZNF214	Q9UL59	606 aa	Predicted RBP	10.31	□□□□□ -0.76
USP4-213	ENST00000488520	PPP1R9A	Q9ULJ8	1098 aa		10.31	□□□□□ -0.76
USP4-213	ENST00000488520	CNPY2	Q9Y2B0	182 aa		10.31	□□□□□ -0.76
USP4-213	ENST00000488520	DIS3	Q9Y2L1	958 aa	Known RBP	10.31	□□□□□ -0.76
USP4-213	ENST00000488520	PRRC2B	Q5JSZ5	2229 aa	Known RBP	10.31	□□□□□ -0.76
USP4-213	ENST00000488520	TET1	Q8NFU7	2136 aa		10.3	□□□□□ -0.76
USP4-213	ENST00000488520	TTC24	A2A3L6	582 aa	Predicted RBP	10.3	□□□□□ -0.76
USP4-213	ENST00000488520	PATL2	C9JE40	543 aa	Known RBP	10.3	□□□□□ -0.76
USP4-213	ENST00000488520	CDC45	O75419	566 aa		10.3	□□□□□ -0.76
USP4-213	ENST00000488520	SNAI1	O95863	264 aa	Predicted RBP	10.3	□□□□□ -0.76
USP4-213	ENST00000488520	F12	P00748	615 aa	Predicted RBP	10.3	□□□□□ -0.76
USP4-213	ENST00000488520	ACR	P10323	421 aa		10.3	□□□□□ -0.76
USP4-213	ENST00000488520	NMI	Q13287	307 aa	Predicted RBP	10.3	□□□□□ -0.76
USP4-213	ENST00000488520	C12orf60	Q5U649	245 aa		10.3	□□□□□ -0.76
USP4-213	ENST00000488520	ANKRD33	Q7Z3H0	272 aa		10.3	□□□□□ -0.76
USP4-213	ENST00000488520	CPXCR1	Q8N123	301 aa		10.3	□□□□□ -0.76
USP4-213	ENST00000488520	DDX11	Q96FC9	970 aa		10.3	□□□□□ -0.76
USP4-213	ENST00000488520	CCDC17	Q96LX7	622 aa		10.3	□□□□□ -0.76
USP4-213	ENST00000488520	GAS2L1	Q99501	681 aa	Predicted RBP	10.3	□□□□□ -0.76
USP4-213	ENST00000488520	TSEN34	Q9BSV6	310 aa	Known RBP	10.3	□□□□□ -0.76
USP4-213	ENST00000488520	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	10.3	□□□□□ -0.76
USP4-213	ENST00000488520	PPP1R12C	Q9BZL4	782 aa		10.3	□□□□□ -0.76
USP4-213	ENST00000488520	PUS7L	Q9H0K6	701 aa	Known RBP	10.3	□□□□□ -0.76
USP4-213	ENST00000488520	GOPC	Q9HD26	462 aa		10.3	□□□□□ -0.76
USP4-213	ENST00000488520	ATP8A2	Q9NTI2	1148 aa		10.3	□□□□□ -0.76
USP4-213	ENST00000488520	FAM184B	Q9ULE4	1060 aa		10.3	□□□□□ -0.76
USP4-213	ENST00000488520	RIPK3	Q9Y572	518 aa		10.3	□□□□□ -0.76
USP4-213	ENST00000488520	BDP1	A6H8Y1	2624 aa		10.3	□□□□□ -0.76
USP4-213	ENST00000488520	TRANK1	O15050	2925 aa		10.29	□□□□□ -0.76
USP4-213	ENST00000488520	GPAA1	O43292	621 aa		10.29	□□□□□ -0.76
USP4-213	ENST00000488520	ADCY6	O43306	1168 aa		10.29	□□□□□ -0.76
USP4-213	ENST00000488520	ASGR1	P07306	291 aa		10.29	□□□□□ -0.76
USP4-213	ENST00000488520	C6orf222	P0C671	652 aa	Predicted RBP	10.29	□□□□□ -0.76
USP4-213	ENST00000488520	CSF2RA	P15509	400 aa		10.29	□□□□□ -0.76
USP4-213	ENST00000488520	IGFBP4	P22692	258 aa		10.29	□□□□□ -0.76
USP4-213	ENST00000488520	CHML	P26374	656 aa		10.29	□□□□□ -0.76
USP4-213	ENST00000488520	TMEM240	Q5SV17	173 aa		10.29	□□□□□ -0.76
USP4-213	ENST00000488520	SNRNP48	Q6IEG0	339 aa	Known RBP	10.29	□□□□□ -0.76
USP4-213	ENST00000488520	MFSD5	Q6N075	450 aa		10.29	□□□□□ -0.76
USP4-213	ENST00000488520	C16orf86	Q6ZW13	317 aa		10.29	□□□□□ -0.76
USP4-213	ENST00000488520	C16orf59	Q7L2K0	433 aa		10.29	□□□□□ -0.76
USP4-213	ENST00000488520	KLHDC9	Q8NEP7	349 aa		10.29	□□□□□ -0.76
USP4-213	ENST00000488520	REPS2	Q8NFH8	660 aa		10.29	□□□□□ -0.76
USP4-213	ENST00000488520	SNIP1	Q8TAD8	396 aa	Known RBP	10.29	□□□□□ -0.76
USP4-213	ENST00000488520	OSBP2	Q969R2	916 aa		10.29	□□□□□ -0.76
USP4-213	ENST00000488520	GLT1D1	Q96MS3	346 aa		10.29	□□□□□ -0.76
USP4-213	ENST00000488520	TOX2	Q96NM4	488 aa		10.29	□□□□□ -0.76
USP4-213	ENST00000488520	STRBP	Q96SI9	672 aa	Known RBP	10.29	□□□□□ -0.76
USP4-213	ENST00000488520	PBX4	Q9BYU1	374 aa		10.29	□□□□□ -0.76
USP4-213	ENST00000488520	KANSL2	Q9H9L4	492 aa		10.29	□□□□□ -0.76
USP4-213	ENST00000488520	ROBO3	Q96MS0	1386 aa		10.28	□□□□□ -0.76
USP4-213	ENST00000488520	SLC3A2	P08195	630 aa	Known RBP	10.28	□□□□□ -0.76
USP4-213	ENST00000488520	TDO2	P48775	406 aa		10.28	□□□□□ -0.76
USP4-213	ENST00000488520	SH3BP2	P78314	561 aa		10.28	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms