RNA–Protein interactions for RNA: ENST00000487252.1

TRIM56-204, Transcript of tripartite motif containing 56, humanhuman

TSL 3

Gene TRIM56, Length 735 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-204ENST00000487252 RIPOR3Q96MK2 946 aa14.1□□□□□ -0.15
TRIM56-204ENST00000487252 NUP88Q99567 741 aaPredicted RBP14.1□□□□□ -0.15
TRIM56-204ENST00000487252 DBNDD2Q9BQY9 259 aa14.1□□□□□ -0.15
TRIM56-204ENST00000487252 VTA1Q9NP79 307 aa14.1□□□□□ -0.15
TRIM56-204ENST00000487252 DCP1AQ9NPI6 582 aaPredicted RBP14.1□□□□□ -0.15
TRIM56-204ENST00000487252 A1CFQ9NQ94 594 aaKnown RBP14.1□□□□□ -0.15
TRIM56-204ENST00000487252 ZBED4O75132 1171 aa14.09□□□□□ -0.15
TRIM56-204ENST00000487252 MYL3P08590 195 aa14.09□□□□□ -0.15
TRIM56-204ENST00000487252 CYP2D6P10635 497 aa14.09□□□□□ -0.15
TRIM56-204ENST00000487252 ADAM15Q13444 863 aa14.09□□□□□ -0.15
TRIM56-204ENST00000487252 PUM1Q14671 1186 aaKnown RBP eCLIP14.09□□□□□ -0.15
TRIM56-204ENST00000487252 CCDC184Q52MB2 194 aa14.09□□□□□ -0.15
TRIM56-204ENST00000487252 TRAF7Q6Q0C0 670 aa14.09□□□□□ -0.15
TRIM56-204ENST00000487252 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.09□□□□□ -0.152e-9■■■■■ 29.3
TRIM56-204ENST00000487252 SMRP1Q8NCR6 262 aa14.09□□□□□ -0.15
TRIM56-204ENST00000487252 PPP1R13LQ8WUF5 828 aa14.09□□□□□ -0.15
TRIM56-204ENST00000487252 MEIS3Q99687 375 aa14.09□□□□□ -0.15
TRIM56-204ENST00000487252 C5orf67F2Z3F1 127 aa14.08□□□□□ -0.16
TRIM56-204ENST00000487252 GTF2F1P35269 517 aaKnown RBP eCLIP14.08□□□□□ -0.161e-10■■□□□ 12.6
TRIM56-204ENST00000487252 COASYQ13057 564 aa14.08□□□□□ -0.16
TRIM56-204ENST00000487252 PTGISQ16647 500 aa14.08□□□□□ -0.16
TRIM56-204ENST00000487252 KIAA1211Q6ZU35 1233 aa14.08□□□□□ -0.16
TRIM56-204ENST00000487252 SESTD1Q86VW0 696 aa14.08□□□□□ -0.16
TRIM56-204ENST00000487252 TMEM105Q8N8V8 129 aa14.08□□□□□ -0.16
TRIM56-204ENST00000487252 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.08□□□□□ -0.16
TRIM56-204ENST00000487252 LMAN2LQ9H0V9 348 aa14.08□□□□□ -0.16
TRIM56-204ENST00000487252 DLL3Q9NYJ7 618 aa14.08□□□□□ -0.16
TRIM56-204ENST00000487252 SALL2Q9Y467 1007 aaPredicted RBP14.08□□□□□ -0.16
TRIM56-204ENST00000487252 RBM47A0AV96 593 aaKnown RBP14.07□□□□□ -0.16
TRIM56-204ENST00000487252 A6NJR5 290 aa14.07□□□□□ -0.16
TRIM56-204ENST00000487252 LINC01565O15544 149 aa14.07□□□□□ -0.16
TRIM56-204ENST00000487252 KPNA6O60684 536 aa14.07□□□□□ -0.16
TRIM56-204ENST00000487252 LINC00271P0C7V0 271 aa14.07□□□□□ -0.16
TRIM56-204ENST00000487252 CKBP12277 381 aa14.07□□□□□ -0.16
TRIM56-204ENST00000487252 SLC4A3P48751 1232 aa14.07□□□□□ -0.16
TRIM56-204ENST00000487252 PTPN21Q16825 1174 aa14.07□□□□□ -0.16
TRIM56-204ENST00000487252 TNNI3KQ59H18 835 aa14.07□□□□□ -0.16
TRIM56-204ENST00000487252 EEPD1Q7L9B9 569 aa14.07□□□□□ -0.16
TRIM56-204ENST00000487252 CRNKL1Q9BZJ0 848 aaKnown RBP14.07□□□□□ -0.16
TRIM56-204ENST00000487252 ACAD9Q9H845 621 aa14.07□□□□□ -0.16
TRIM56-204ENST00000487252 GPHNQ9NQX3 736 aaPredicted RBP14.07□□□□□ -0.16
TRIM56-204ENST00000487252 CLEC1BQ9P126 229 aa14.07□□□□□ -0.16
TRIM56-204ENST00000487252 NOD1Q9Y239 953 aa14.07□□□□□ -0.16
TRIM56-204ENST00000487252 FPGT-TNNI3KV9GXZ4 949 aa14.07□□□□□ -0.16
TRIM56-204ENST00000487252 MAGEB6P1A0A0J9YX57 407 aa14.06□□□□□ -0.16
TRIM56-204ENST00000487252 CDK8P49336 464 aa14.06□□□□□ -0.16
TRIM56-204ENST00000487252 RRP1P56182 461 aaKnown RBP14.06□□□□□ -0.16
TRIM56-204ENST00000487252 MBTPS1Q14703 1052 aa14.06□□□□□ -0.16
TRIM56-204ENST00000487252 PHF7Q9BWX1 381 aaPredicted RBP14.06□□□□□ -0.16
TRIM56-204ENST00000487252 WDR11Q9BZH6 1224 aa14.06□□□□□ -0.16
TRIM56-204ENST00000487252 COG6Q9Y2V7 657 aa14.06□□□□□ -0.16
TRIM56-204ENST00000487252 F5H6K3 240 aa14.05□□□□□ -0.16
TRIM56-204ENST00000487252 RBAK-RBAKDNI3L0D1 243 aa14.05□□□□□ -0.16
TRIM56-204ENST00000487252 NDUFB10O96000 172 aa14.05□□□□□ -0.16
TRIM56-204ENST00000487252 AMHP03971 560 aa14.05□□□□□ -0.16
TRIM56-204ENST00000487252 KLRC3Q07444 240 aa14.05□□□□□ -0.16
TRIM56-204ENST00000487252 GDF6Q6KF10 455 aaPredicted RBP14.05□□□□□ -0.16
TRIM56-204ENST00000487252 C16orf86Q6ZW13 317 aa14.05□□□□□ -0.16
TRIM56-204ENST00000487252 SDR42E1Q8WUS8 393 aa14.05□□□□□ -0.16
TRIM56-204ENST00000487252 ANTXR1Q9H6X2 564 aa14.05□□□□□ -0.16
TRIM56-204ENST00000487252 HOMER2Q9NSB8 354 aa14.05□□□□□ -0.16
TRIM56-204ENST00000487252 SPTBN2O15020 2390 aa14.04□□□□□ -0.16
TRIM56-204ENST00000487252 BAZ2AQ9UIF9 1905 aaKnown RBP14.04□□□□□ -0.16
TRIM56-204ENST00000487252 GRM6O15303 877 aa14.04□□□□□ -0.16
TRIM56-204ENST00000487252 RAD21O60216 631 aa14.04□□□□□ -0.16
TRIM56-204ENST00000487252 LGR5O75473 907 aa14.04□□□□□ -0.16
TRIM56-204ENST00000487252 RB1P06400 928 aa14.04□□□□□ -0.16
TRIM56-204ENST00000487252 G3BP1Q13283 466 aaKnown RBP eCLIP14.04□□□□□ -0.16
TRIM56-204ENST00000487252 TRIM71Q2Q1W2 868 aaKnown RBP14.04□□□□□ -0.16
TRIM56-204ENST00000487252 C12orf60Q5U649 245 aa14.04□□□□□ -0.16
TRIM56-204ENST00000487252 POTEHQ6S545 545 aa14.04□□□□□ -0.16
TRIM56-204ENST00000487252 MYOCDQ8IZQ8 938 aa14.04□□□□□ -0.16
TRIM56-204ENST00000487252 TOP1MTQ969P6 601 aa14.04□□□□□ -0.16
TRIM56-204ENST00000487252 COL26A1Q96A83 441 aa14.04□□□□□ -0.16
TRIM56-204ENST00000487252 DBNLQ9UJU6 430 aaKnown RBP14.04□□□□□ -0.16
TRIM56-204ENST00000487252 OTOGLQ3ZCN5 2332 aa14.04□□□□□ -0.16
TRIM56-204ENST00000487252 FDX1P10109 184 aa14.03□□□□□ -0.16
TRIM56-204ENST00000487252 ATF7P17544 494 aaPredicted RBP14.03□□□□□ -0.16
TRIM56-204ENST00000487252 CAMK1Q14012 370 aa14.03□□□□□ -0.16
TRIM56-204ENST00000487252 COL9A2Q14055 689 aaPredicted RBP14.03□□□□□ -0.16
TRIM56-204ENST00000487252 ST3GAL2Q16842 350 aa14.03□□□□□ -0.16
TRIM56-204ENST00000487252 BRDTQ58F21 947 aaPredicted RBP14.03□□□□□ -0.16
TRIM56-204ENST00000487252 OR6J1Q8NGC5 347 aa14.03□□□□□ -0.16
TRIM56-204ENST00000487252 KIFC2Q96AC6 838 aa14.03□□□□□ -0.16
TRIM56-204ENST00000487252 RNF146Q9NTX7 359 aa14.03□□□□□ -0.16
TRIM56-204ENST00000487252 CYP39A1Q9NYL5 469 aa14.03□□□□□ -0.16
TRIM56-204ENST00000487252 NYAP2Q9P242 653 aa14.03□□□□□ -0.16
TRIM56-204ENST00000487252 FEM1BQ9UK73 627 aa14.03□□□□□ -0.16
TRIM56-204ENST00000487252 USP15Q9Y4E8 981 aaPredicted RBP14.03□□□□□ -0.16
TRIM56-204ENST00000487252 PCDHGC5Q9Y5F6 944 aa14.03□□□□□ -0.16
TRIM56-204ENST00000487252 ANKRD11Q6UB99 2663 aaPredicted RBP14.03□□□□□ -0.16
TRIM56-204ENST00000487252 FAM208BQ5VWN6 2430 aa14.02□□□□□ -0.16
TRIM56-204ENST00000487252 LOC102724159A0A0B4J2E5 919 aa14.02□□□□□ -0.17
TRIM56-204ENST00000487252 NKRFO15226 690 aaKnown RBP eCLIP14.02□□□□□ -0.17
TRIM56-204ENST00000487252 NDUFV1P49821 464 aa14.02□□□□□ -0.17
TRIM56-204ENST00000487252 PWP2Q15269 919 aaKnown RBP14.02□□□□□ -0.17
TRIM56-204ENST00000487252 TKFCQ3LXA3 575 aa14.02□□□□□ -0.17
TRIM56-204ENST00000487252 EFHBQ8N7U6 833 aa14.02□□□□□ -0.17
TRIM56-204ENST00000487252 SUSD6Q92537 303 aa14.02□□□□□ -0.17
TRIM56-204ENST00000487252 YME1L1Q96TA2 773 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms