RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 HOMER2Q9NSB8 354 aa9.4□□□□□ -0.9
USP4-210ENST00000483212 FBXO2Q9UK22 296 aaPredicted RBP9.4□□□□□ -0.9
USP4-210ENST00000483212 ABT1Q9ULW3 272 aaKnown RBP9.4□□□□□ -0.9
USP4-210ENST00000483212 CTDP1Q9Y5B0 961 aaPredicted RBP9.4□□□□□ -0.9
USP4-210ENST00000483212 MRVI1Q9Y6F6 885 aa9.4□□□□□ -0.9
USP4-210ENST00000483212 LCTP09848 1927 aa9.4□□□□□ -0.9
USP4-210ENST00000483212 CYP3A7-CYP3A51PA0A087WV96 503 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 GOLGA6L22H0YM25 854 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 CYP3A4P08684 503 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 ATP2B1P20020 1258 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 PTPREP23469 700 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 CYP3A7P24462 503 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 CIITAP33076 1130 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 TM4SF4P48230 202 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 APLP1P51693 650 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 UBE2HP62256 183 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 ERVK-9P63128 1117 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 ERVK-24P63145 666 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 ARHGAP4P98171 946 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 GRIN1Q05586 938 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 BAATQ14032 418 aaPredicted RBP9.39□□□□□ -0.91
USP4-210ENST00000483212 STK38Q15208 465 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 CSPP1Q1MSJ5 1256 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 LETM2Q2VYF4 491 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 PPP4R3AQ6IN85 833 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 CYP4F22Q6NT55 531 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 RNF207Q6ZRF8 634 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 IFNL1Q8IU54 200 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 SHCBP1Q8NEM2 672 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 GPT2Q8TD30 523 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 PARK7Q99497 189 aaKnown RBP9.39□□□□□ -0.91
USP4-210ENST00000483212 PAGR1Q9BTK6 254 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 TMEM60Q9H2L4 133 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 CYP39A1Q9NYL5 469 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 PCDHA7Q9UN72 937 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 MYH7BA7E2Y1 1941 aa9.39□□□□□ -0.91
USP4-210ENST00000483212 THSD7BQ9C0I4 1608 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 ASTN1O14525 1302 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 IGLV3-22A0A075B6J6 115 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 A0A1W2PQ27 194 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 A0A1W2PQ64 194 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 A0A1W2PQD8 194 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 SPDYE3A6NKU9 549 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 SLC37A4O43826 429 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 SLC25A27O95847 323 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 BMP15O95972 392 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 GCFC2P16383 781 aaKnown RBP9.38□□□□□ -0.91
USP4-210ENST00000483212 ERCC3P19447 782 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 PTMSP20962 102 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 MARCKSP29966 332 aaPredicted RBP9.38□□□□□ -0.91
USP4-210ENST00000483212 MCM7P33993 719 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 COPB2P35606 906 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 GCLCP48506 637 aaPredicted RBP9.38□□□□□ -0.91
USP4-210ENST00000483212 USP11P51784 963 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 INHBEP58166 350 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 PTGDRQ13258 359 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 PLS1Q14651 629 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 IL17AQ16552 155 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 FCHSD1Q86WN1 690 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 IL31RAQ8NI17 732 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 LENG9Q96B70 501 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 MTMR9Q96QG7 549 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 PURBQ96QR8 312 aaKnown RBP9.38□□□□□ -0.91
USP4-210ENST00000483212 TAAR1Q96RJ0 339 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 FBXO40Q9UH90 709 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 CEP131Q9UPN4 1083 aa9.38□□□□□ -0.91
USP4-210ENST00000483212 SRPRBQ9Y5M8 271 aaKnown RBP9.38□□□□□ -0.91
USP4-210ENST00000483212 DNAJC25-GNG10A0A024R161 153 aa9.37□□□□□ -0.91
USP4-210ENST00000483212 FAM237AA0A1B0GTK4 181 aa9.37□□□□□ -0.91
USP4-210ENST00000483212 FAM86B1E9PN63 330 aa9.37□□□□□ -0.91
USP4-210ENST00000483212 CCNT1O60563 726 aaKnown RBP9.37□□□□□ -0.91
USP4-210ENST00000483212 CUTAO60888 179 aa9.37□□□□□ -0.91
USP4-210ENST00000483212 FAM86B2P0C5J1 330 aa9.37□□□□□ -0.91
USP4-210ENST00000483212 BCRP11274 1271 aa9.37□□□□□ -0.91
USP4-210ENST00000483212 PRPHP41219 470 aa9.37□□□□□ -0.91
USP4-210ENST00000483212 SREBF2Q12772 1141 aa9.37□□□□□ -0.91
USP4-210ENST00000483212 FAM110CQ1W6H9 321 aa9.37□□□□□ -0.91
USP4-210ENST00000483212 KLHL40Q2TBA0 621 aa9.37□□□□□ -0.91
USP4-210ENST00000483212 Q4G0T1 1027 aa9.37□□□□□ -0.91
USP4-210ENST00000483212 ARL6IP4Q66PJ3 421 aaKnown RBP9.37□□□□□ -0.91
USP4-210ENST00000483212 ADALQ6DHV7 355 aa9.37□□□□□ -0.91
USP4-210ENST00000483212 SHC4Q6S5L8 630 aa9.37□□□□□ -0.91
USP4-210ENST00000483212 NSMFQ6X4W1 530 aa9.37□□□□□ -0.91
USP4-210ENST00000483212 ANKRD13CQ8N6S4 541 aa9.37□□□□□ -0.91
USP4-210ENST00000483212 KRI1Q8N9T8 703 aaKnown RBP9.37□□□□□ -0.91
USP4-210ENST00000483212 GPRC5AQ8NFJ5 357 aa9.37□□□□□ -0.91
USP4-210ENST00000483212 SMCR8Q8TEV9 937 aaPredicted RBP9.37□□□□□ -0.91
USP4-210ENST00000483212 FGD4Q96M96 766 aa9.37□□□□□ -0.91
USP4-210ENST00000483212 NAP1L4Q99733 375 aaKnown RBP9.37□□□□□ -0.91
USP4-210ENST00000483212 PDCD2LQ9BRP1 358 aa9.37□□□□□ -0.91
USP4-210ENST00000483212 PORCNQ9H237 461 aa9.37□□□□□ -0.91
USP4-210ENST00000483212 GOLPH3LQ9H4A5 285 aa9.37□□□□□ -0.91
USP4-210ENST00000483212 MROH8Q9H579 483 aa9.37□□□□□ -0.91
USP4-210ENST00000483212 PXMP2Q9NR77 195 aa9.37□□□□□ -0.91
USP4-210ENST00000483212 LRRC37A2A6NM11 1700 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 PFASO15067 1338 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 SOWAHBA6NEL2 793 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 LAD1O00515 517 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 TRAK2O60296 914 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 NEMFO60524 1076 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms