RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ARHGEF6Q15052 776 aa13.98□□□□□ -0.17
SDC1-206ENST00000482879 NONOQ15233 471 aaKnown RBP eCLIP13.98□□□□□ -0.17
SDC1-206ENST00000482879 ARHGEF16Q5VV41 709 aa13.98□□□□□ -0.17
SDC1-206ENST00000482879 PIK3AP1Q6ZUJ8 805 aa13.98□□□□□ -0.17
SDC1-206ENST00000482879 NOSTRINQ8IVI9 506 aa13.98□□□□□ -0.17
SDC1-206ENST00000482879 FAM133AQ8N9E0 248 aa13.98□□□□□ -0.17
SDC1-206ENST00000482879 NSUN6Q8TEA1 469 aaKnown RBP13.98□□□□□ -0.17
SDC1-206ENST00000482879 SLC5A4Q9NY91 659 aa13.98□□□□□ -0.17
SDC1-206ENST00000482879 ADD3Q9UEY8 706 aaKnown RBP13.98□□□□□ -0.17
SDC1-206ENST00000482879 GJD2Q9UKL4 321 aa13.98□□□□□ -0.17
SDC1-206ENST00000482879 CIZ1Q9ULV3 898 aaPredicted RBP13.98□□□□□ -0.17
SDC1-206ENST00000482879 ZNF236Q9UL36 1845 aa13.98□□□□□ -0.17
SDC1-206ENST00000482879 CEP350Q5VT06 3117 aa13.97□□□□□ -0.17
SDC1-206ENST00000482879 PCNTO95613 3336 aa13.97□□□□□ -0.17
SDC1-206ENST00000482879 SOWAHBA6NEL2 793 aa13.97□□□□□ -0.17
SDC1-206ENST00000482879 FAM205CA6NFA0 338 aa13.97□□□□□ -0.17
SDC1-206ENST00000482879 EIF2AK2P19525 551 aaKnown RBP13.97□□□□□ -0.17
SDC1-206ENST00000482879 HOXD10P28358 340 aa13.97□□□□□ -0.17
SDC1-206ENST00000482879 UBXN2AP68543 259 aa13.97□□□□□ -0.17
SDC1-206ENST00000482879 CAP1Q01518 475 aa13.97□□□□□ -0.17
SDC1-206ENST00000482879 RESTQ13127 1097 aa13.97□□□□□ -0.17
SDC1-206ENST00000482879 ZNF792Q3KQV3 632 aa13.97□□□□□ -0.17
SDC1-206ENST00000482879 EARS2Q5JPH6 523 aaKnown RBP13.97□□□□□ -0.17
SDC1-206ENST00000482879 BRAPQ7Z569 592 aa13.97□□□□□ -0.17
SDC1-206ENST00000482879 DNERQ8NFT8 737 aa13.97□□□□□ -0.17
SDC1-206ENST00000482879 SOCS4Q8WXH5 440 aa13.97□□□□□ -0.17
SDC1-206ENST00000482879 ZSCAN16Q9H4T2 348 aaPredicted RBP13.97□□□□□ -0.17
SDC1-206ENST00000482879 PXMP2Q9NR77 195 aa13.97□□□□□ -0.17
SDC1-206ENST00000482879 CHMP5Q9NZZ3 219 aa13.97□□□□□ -0.17
SDC1-206ENST00000482879 ZDHHC9Q9Y397 364 aa13.97□□□□□ -0.17
SDC1-206ENST00000482879 TCHHQ07283 1943 aa13.97□□□□□ -0.17
SDC1-206ENST00000482879 MYH15Q9Y2K3 1946 aa13.96□□□□□ -0.17
SDC1-206ENST00000482879 FOXN1O15353 648 aa13.96□□□□□ -0.17
SDC1-206ENST00000482879 F13A1P00488 732 aa13.96□□□□□ -0.17
SDC1-206ENST00000482879 HSPA1AP0DMV8 641 aaKnown RBP13.96□□□□□ -0.17
SDC1-206ENST00000482879 HSPA1BP0DMV9 641 aaKnown RBP13.96□□□□□ -0.17
SDC1-206ENST00000482879 CYP2B6P20813 491 aa13.96□□□□□ -0.17
SDC1-206ENST00000482879 RGS2P41220 211 aa13.96□□□□□ -0.17
SDC1-206ENST00000482879 ALDH5A1P51649 535 aaPredicted RBP13.96□□□□□ -0.17
SDC1-206ENST00000482879 INF2Q27J81 1249 aa13.96□□□□□ -0.17
SDC1-206ENST00000482879 NPLOC4Q8TAT6 608 aa13.96□□□□□ -0.17
SDC1-206ENST00000482879 TBCKQ8TEA7 893 aa13.96□□□□□ -0.17
SDC1-206ENST00000482879 USP6NLQ92738 828 aa13.96□□□□□ -0.17
SDC1-206ENST00000482879 PDCD2LQ9BRP1 358 aa13.96□□□□□ -0.17
SDC1-206ENST00000482879 GABRQQ9UN88 632 aa13.96□□□□□ -0.17
SDC1-206ENST00000482879 DIS3Q9Y2L1 958 aaKnown RBP13.96□□□□□ -0.17
SDC1-206ENST00000482879 KIAA1217Q5T5P2 1943 aa13.96□□□□□ -0.18
SDC1-206ENST00000482879 RPTORQ8N122 1335 aa13.95□□□□□ -0.18
SDC1-206ENST00000482879 B4DLN1 442 aa13.95□□□□□ -0.18
SDC1-206ENST00000482879 GNRH1P01148 92 aa13.95□□□□□ -0.18
SDC1-206ENST00000482879 NR3C2P08235 984 aa13.95□□□□□ -0.18
SDC1-206ENST00000482879 HSPA8P11142 646 aaKnown RBP13.95□□□□□ -0.18
SDC1-206ENST00000482879 MYCLP12524 364 aaPredicted RBP13.95□□□□□ -0.18
SDC1-206ENST00000482879 ATP2B1P20020 1258 aa13.95□□□□□ -0.18
SDC1-206ENST00000482879 SREBF1P36956 1147 aa13.95□□□□□ -0.18
SDC1-206ENST00000482879 FLT3LGP49771 235 aa13.95□□□□□ -0.18
SDC1-206ENST00000482879 ARHGAP4P98171 946 aa13.95□□□□□ -0.18
SDC1-206ENST00000482879 PRKCZQ05513 592 aa13.95□□□□□ -0.18
SDC1-206ENST00000482879 PGM5Q15124 567 aa13.95□□□□□ -0.18
SDC1-206ENST00000482879 FGD4Q96M96 766 aa13.95□□□□□ -0.18
SDC1-206ENST00000482879 IWS1Q96ST2 819 aa13.95□□□□□ -0.18
SDC1-206ENST00000482879 MPHOSPH6Q99547 160 aaKnown RBP13.95□□□□□ -0.18
SDC1-206ENST00000482879 SRRDQ9UH36 339 aa13.95□□□□□ -0.18
SDC1-206ENST00000482879 NOL7Q9UMY1 257 aaKnown RBP13.95□□□□□ -0.18
SDC1-206ENST00000482879 ASTN1O14525 1302 aa13.94□□□□□ -0.18
SDC1-206ENST00000482879 FRMPD4Q14CM0 1322 aa13.94□□□□□ -0.18
SDC1-206ENST00000482879 ASB14A6NK59 587 aa13.94□□□□□ -0.18
SDC1-206ENST00000482879 HOXC6P09630 235 aa13.94□□□□□ -0.18
SDC1-206ENST00000482879 CCND2P30279 289 aa13.94□□□□□ -0.18
SDC1-206ENST00000482879 ZNF76P36508 570 aa13.94□□□□□ -0.18
SDC1-206ENST00000482879 CTCFP49711 727 aaPredicted RBP13.94□□□□□ -0.18
SDC1-206ENST00000482879 USP11P51784 963 aa13.94□□□□□ -0.18
SDC1-206ENST00000482879 LETM2Q2VYF4 491 aa13.94□□□□□ -0.18
SDC1-206ENST00000482879 FAM173BQ6P4H8 233 aa13.94□□□□□ -0.18
SDC1-206ENST00000482879 ZNF467Q7Z7K2 595 aaPredicted RBP13.94□□□□□ -0.18
SDC1-206ENST00000482879 NEK8Q86SG6 692 aa13.94□□□□□ -0.18
SDC1-206ENST00000482879 VSIG10LQ86VR7 867 aa13.94□□□□□ -0.18
SDC1-206ENST00000482879 IL31RAQ8NI17 732 aa13.94□□□□□ -0.18
SDC1-206ENST00000482879 MAML3Q96JK9 1138 aa13.94□□□□□ -0.18
SDC1-206ENST00000482879 APBA2Q99767 749 aa13.94□□□□□ -0.18
SDC1-206ENST00000482879 LOC102724159A0A0B4J2E5 919 aa13.93□□□□□ -0.18
SDC1-206ENST00000482879 EDIL3O43854 480 aa13.93□□□□□ -0.18
SDC1-206ENST00000482879 CYP3A4P08684 503 aa13.93□□□□□ -0.18
SDC1-206ENST00000482879 XRCC5P13010 732 aaKnown RBP13.93□□□□□ -0.18
SDC1-206ENST00000482879 TRAPPC10P48553 1259 aa13.93□□□□□ -0.18
SDC1-206ENST00000482879 LBX1P52954 281 aa13.93□□□□□ -0.18
SDC1-206ENST00000482879 PDE4DQ08499 809 aa13.93□□□□□ -0.18
SDC1-206ENST00000482879 PWP2Q15269 919 aaKnown RBP13.93□□□□□ -0.18
SDC1-206ENST00000482879 STXBP2Q15833 593 aa13.93□□□□□ -0.18
SDC1-206ENST00000482879 FOXD4L6Q3SYB3 417 aaPredicted RBP13.93□□□□□ -0.18
SDC1-206ENST00000482879 RILPL1Q5EBL4 403 aa13.93□□□□□ -0.18
SDC1-206ENST00000482879 MYSM1Q5VVJ2 828 aa13.93□□□□□ -0.18
SDC1-206ENST00000482879 PCNX4Q63HM2 1172 aa13.93□□□□□ -0.18
SDC1-206ENST00000482879 XRRA1Q6P2D8 792 aa13.93□□□□□ -0.18
SDC1-206ENST00000482879 FOXD4L3Q6VB84 417 aaPredicted RBP13.93□□□□□ -0.18
SDC1-206ENST00000482879 CRYGNQ8WXF5 182 aa13.93□□□□□ -0.18
SDC1-206ENST00000482879 ZFP91Q96JP5 570 aaPredicted RBP13.93□□□□□ -0.18
SDC1-206ENST00000482879 TRIM17Q9Y577 477 aa13.93□□□□□ -0.18
SDC1-206ENST00000482879 DDX49Q9Y6V7 483 aaKnown RBP13.93□□□□□ -0.18
SDC1-206ENST00000482879 CCNT1O60563 726 aaKnown RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms