RNA–Protein interactions for RNA: ENST00000482251.2

CPSF4-212, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 574 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-212ENST00000482251 TIMP1P01033 207 aa12.17□□□□□ -0.46
CPSF4-212ENST00000482251 TXNP10599 105 aaKnown RBP12.17□□□□□ -0.46
CPSF4-212ENST00000482251 RXRAP19793 462 aa12.17□□□□□ -0.46
CPSF4-212ENST00000482251 HOXA13P31271 388 aaPredicted RBP12.17□□□□□ -0.46
CPSF4-212ENST00000482251 CYP2C18P33260 490 aa12.17□□□□□ -0.46
CPSF4-212ENST00000482251 CHMP4BP1P59074 171 aa12.17□□□□□ -0.46
CPSF4-212ENST00000482251 PWP2Q15269 919 aaKnown RBP12.17□□□□□ -0.46
CPSF4-212ENST00000482251 ARHGEF16Q5VV41 709 aa12.17□□□□□ -0.46
CPSF4-212ENST00000482251 CASC1Q6TDU7 716 aa12.17□□□□□ -0.46
CPSF4-212ENST00000482251 CATIPQ7Z7H3 387 aa12.17□□□□□ -0.46
CPSF4-212ENST00000482251 SCFD2Q8WU76 684 aa12.17□□□□□ -0.46
CPSF4-212ENST00000482251 RMDN3Q96TC7 470 aa12.17□□□□□ -0.46
CPSF4-212ENST00000482251 LRRC2Q9BYS8 371 aa12.17□□□□□ -0.46
CPSF4-212ENST00000482251 TRPV6Q9H1D0 765 aa12.17□□□□□ -0.46
CPSF4-212ENST00000482251 LY9Q9HBG7 655 aa12.17□□□□□ -0.46
CPSF4-212ENST00000482251 PCDHA1Q9Y5I3 950 aa12.17□□□□□ -0.46
CPSF4-212ENST00000482251 BAZ2BQ9UIF8 2168 aaKnown RBP12.17□□□□□ -0.46
CPSF4-212ENST00000482251 COL6A3P12111 3177 aa12.16□□□□□ -0.46
CPSF4-212ENST00000482251 RBM47A0AV96 593 aaKnown RBP12.16□□□□□ -0.46
CPSF4-212ENST00000482251 CYTH3O43739 400 aa12.16□□□□□ -0.46
CPSF4-212ENST00000482251 SORBS3O60504 671 aa12.16□□□□□ -0.46
CPSF4-212ENST00000482251 CABYRO75952 493 aa12.16□□□□□ -0.46
CPSF4-212ENST00000482251 ACRP10323 421 aa12.16□□□□□ -0.46
CPSF4-212ENST00000482251 CSF2RAP15509 400 aa12.16□□□□□ -0.46
CPSF4-212ENST00000482251 CPT1AP50416 773 aa12.16□□□□□ -0.46
CPSF4-212ENST00000482251 PURAQ00577 322 aaKnown RBP12.16□□□□□ -0.46
CPSF4-212ENST00000482251 TROAPQ12815 778 aa12.16□□□□□ -0.46
CPSF4-212ENST00000482251 TTLL4Q14679 1199 aa12.16□□□□□ -0.46
CPSF4-212ENST00000482251 LY6KQ17RY6 165 aa12.16□□□□□ -0.46
CPSF4-212ENST00000482251 FAM47CQ5HY64 1035 aa12.16□□□□□ -0.46
CPSF4-212ENST00000482251 CREB3L3Q68CJ9 461 aa12.16□□□□□ -0.46
CPSF4-212ENST00000482251 NFXL1Q6ZNB6 911 aa12.16□□□□□ -0.46
CPSF4-212ENST00000482251 ZNF654Q8IZM8 581 aa12.16□□□□□ -0.46
CPSF4-212ENST00000482251 RGS22Q8NE09 1264 aa12.16□□□□□ -0.46
CPSF4-212ENST00000482251 IGDCC4Q8TDY8 1250 aa12.16□□□□□ -0.46
CPSF4-212ENST00000482251 NSUN6Q8TEA1 469 aaKnown RBP12.16□□□□□ -0.46
CPSF4-212ENST00000482251 MTMR8Q96EF0 704 aa12.16□□□□□ -0.46
CPSF4-212ENST00000482251 ZFP91Q96JP5 570 aaPredicted RBP12.16□□□□□ -0.46
CPSF4-212ENST00000482251 PXMP2Q9NR77 195 aa12.16□□□□□ -0.46
CPSF4-212ENST00000482251 Q9Y3F1 56 aa12.16□□□□□ -0.46
CPSF4-212ENST00000482251 KIAA1217Q5T5P2 1943 aa12.15□□□□□ -0.46
CPSF4-212ENST00000482251 B4DLN1 442 aa12.15□□□□□ -0.46
CPSF4-212ENST00000482251 CD4P01730 458 aa12.15□□□□□ -0.46
CPSF4-212ENST00000482251 MYCLP12524 364 aaPredicted RBP12.15□□□□□ -0.46
CPSF4-212ENST00000482251 HSD17B4P51659 736 aa12.15□□□□□ -0.46
CPSF4-212ENST00000482251 MRPL12P52815 198 aaKnown RBP12.15□□□□□ -0.46
CPSF4-212ENST00000482251 BMP2KLQ5H9B9 411 aa12.15□□□□□ -0.46
CPSF4-212ENST00000482251 ZNF697Q5TEC3 545 aa12.15□□□□□ -0.46
CPSF4-212ENST00000482251 MFSD5Q6N075 450 aa12.15□□□□□ -0.46
CPSF4-212ENST00000482251 GPR153Q6NV75 609 aa12.15□□□□□ -0.46
CPSF4-212ENST00000482251 SLC43A3Q8NBI5 491 aa12.15□□□□□ -0.46
CPSF4-212ENST00000482251 IL31RAQ8NI17 732 aa12.15□□□□□ -0.46
CPSF4-212ENST00000482251 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.15□□□□□ -0.461e-8■■□□□ 12.8
CPSF4-212ENST00000482251 HIPK3Q9H422 1215 aa12.15□□□□□ -0.46
CPSF4-212ENST00000482251 RIOX1Q9H6W3 641 aa12.15□□□□□ -0.46
CPSF4-212ENST00000482251 TRMT13Q9NUP7 481 aaKnown RBP12.15□□□□□ -0.46
CPSF4-212ENST00000482251 POLR3EQ9NVU0 708 aa12.15□□□□□ -0.46
CPSF4-212ENST00000482251 MTMR10Q9NXD2 777 aa12.15□□□□□ -0.46
CPSF4-212ENST00000482251 CDH23Q9H251 3354 aa12.14□□□□□ -0.47
CPSF4-212ENST00000482251 CCDC69A6NI79 296 aa12.14□□□□□ -0.47
CPSF4-212ENST00000482251 SH2B2O14492 632 aaPredicted RBP12.14□□□□□ -0.47
CPSF4-212ENST00000482251 NKRFO15226 690 aaKnown RBP eCLIP12.14□□□□□ -0.47
CPSF4-212ENST00000482251 DDAH1O94760 285 aa12.14□□□□□ -0.47
CPSF4-212ENST00000482251 PLEKHA8P1O95397 391 aa12.14□□□□□ -0.47
CPSF4-212ENST00000482251 CYP2C9P11712 490 aa12.14□□□□□ -0.47
CPSF4-212ENST00000482251 MCM5P33992 734 aa12.14□□□□□ -0.47
CPSF4-212ENST00000482251 CCL23P55773 120 aa12.14□□□□□ -0.47
CPSF4-212ENST00000482251 STXBP2Q15833 593 aa12.14□□□□□ -0.47
CPSF4-212ENST00000482251 FCHSD1Q86WN1 690 aa12.14□□□□□ -0.47
CPSF4-212ENST00000482251 CMTR1Q8N1G2 835 aaKnown RBP12.14□□□□□ -0.47
CPSF4-212ENST00000482251 TMEM199Q8N511 208 aa12.14□□□□□ -0.47
CPSF4-212ENST00000482251 CTCFLQ8NI51 663 aaPredicted RBP12.14□□□□□ -0.47
CPSF4-212ENST00000482251 AFG1LQ8WV93 481 aa12.14□□□□□ -0.47
CPSF4-212ENST00000482251 TCEANC2Q96MN5 208 aa12.14□□□□□ -0.47
CPSF4-212ENST00000482251 MTG1Q9BT17 334 aaPredicted RBP12.14□□□□□ -0.47
CPSF4-212ENST00000482251 ALDH8A1Q9H2A2 487 aaPredicted RBP12.14□□□□□ -0.47
CPSF4-212ENST00000482251 MRVI1Q9Y6F6 885 aa12.14□□□□□ -0.47
CPSF4-212ENST00000482251 SCN10AQ9Y5Y9 1956 aa12.13□□□□□ -0.47
CPSF4-212ENST00000482251 PNMA6FA0A0J9YX94 578 aa12.13□□□□□ -0.47
CPSF4-212ENST00000482251 GH1P01241 217 aa12.13□□□□□ -0.47
CPSF4-212ENST00000482251 NR3C2P08235 984 aa12.13□□□□□ -0.47
CPSF4-212ENST00000482251 MMP3P08254 477 aa12.13□□□□□ -0.47
CPSF4-212ENST00000482251 ARHGAP1Q07960 439 aa12.13□□□□□ -0.47
CPSF4-212ENST00000482251 PPIGQ13427 754 aaKnown RBP eCLIP12.13□□□□□ -0.47
CPSF4-212ENST00000482251 NECTIN1Q15223 517 aa12.13□□□□□ -0.47
CPSF4-212ENST00000482251 NBPF20Q3BBV1 942 aa12.13□□□□□ -0.47
CPSF4-212ENST00000482251 BRDTQ58F21 947 aaPredicted RBP12.13□□□□□ -0.47
CPSF4-212ENST00000482251 FAM109BQ6ICB4 259 aaPredicted RBP12.13□□□□□ -0.47
CPSF4-212ENST00000482251 CCDC62Q6P9F0 684 aa12.13□□□□□ -0.47
CPSF4-212ENST00000482251 SCLYQ96I15 445 aa12.13□□□□□ -0.47
CPSF4-212ENST00000482251 CCDC136Q96JN2 1154 aa12.13□□□□□ -0.47
CPSF4-212ENST00000482251 GUCD1Q96NT3 240 aa12.13□□□□□ -0.47
CPSF4-212ENST00000482251 IWS1Q96ST2 819 aa12.13□□□□□ -0.47
CPSF4-212ENST00000482251 PDCD2LQ9BRP1 358 aa12.13□□□□□ -0.47
CPSF4-212ENST00000482251 NOC4LQ9BVI4 516 aaKnown RBP12.13□□□□□ -0.47
CPSF4-212ENST00000482251 WNT8AQ9H1J5 351 aa12.13□□□□□ -0.47
CPSF4-212ENST00000482251 hCG_1642624A0A1W2PR95 340 aa12.12□□□□□ -0.47
CPSF4-212ENST00000482251 A6NJR5 290 aa12.12□□□□□ -0.47
CPSF4-212ENST00000482251 GCOM1H8Y6P7 765 aaPredicted RBP12.12□□□□□ -0.47
CPSF4-212ENST00000482251 RBAK-RBAKDNI3L0D1 243 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms