RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 RNF135Q8IUD6 432 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 ITPRIPQ8IWB1 547 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 NEK9Q8TD19 979 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 STAG1Q8WVM7 1258 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 EDAQ92838 391 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 CEP95Q96GE4 821 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 YME1L1Q96TA2 773 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 ALG1Q9BT22 464 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 PAG1Q9NWQ8 432 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 ADD3Q9UEY8 706 aaKnown RBP9.15□□□□□ -0.94
USP54-213ENST00000481991 PRKAG3Q9UGI9 489 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 TSPY3P0CV98 308 aa9.14□□□□□ -0.95
USP54-213ENST00000481991 TSPY8P0CW00 308 aa9.14□□□□□ -0.95
USP54-213ENST00000481991 TDO2P48775 406 aa9.14□□□□□ -0.95
USP54-213ENST00000481991 PTPN11Q06124 597 aaPredicted RBP9.14□□□□□ -0.95
USP54-213ENST00000481991 MKRN4PQ13434 485 aaPredicted RBP9.14□□□□□ -0.95
USP54-213ENST00000481991 TIGD5Q53EQ6 642 aa9.14□□□□□ -0.95
USP54-213ENST00000481991 GDF6Q6KF10 455 aaPredicted RBP9.14□□□□□ -0.95
USP54-213ENST00000481991 FTSJ3Q8IY81 847 aaKnown RBP9.14□□□□□ -0.95
USP54-213ENST00000481991 C7orf31Q8N865 590 aa9.14□□□□□ -0.95
USP54-213ENST00000481991 CAGE1Q8TC20 777 aa9.14□□□□□ -0.95
USP54-213ENST00000481991 AFAP1L1Q8TED9 768 aa9.14□□□□□ -0.95
USP54-213ENST00000481991 PABPC5Q96DU9 382 aaKnown RBP9.14□□□□□ -0.95
USP54-213ENST00000481991 MPHOSPH6Q99547 160 aaKnown RBP9.14□□□□□ -0.95
USP54-213ENST00000481991 POP1Q99575 1024 aaKnown RBP9.14□□□□□ -0.95
USP54-213ENST00000481991 PRRX2Q99811 253 aa9.14□□□□□ -0.95
USP54-213ENST00000481991 ZNF287Q9HBT7 754 aa9.14□□□□□ -0.95
USP54-213ENST00000481991 ARPP21Q9UBL0 812 aaPredicted RBP9.14□□□□□ -0.95
USP54-213ENST00000481991 NAV1Q8NEY1 1877 aa9.13□□□□□ -0.95
USP54-213ENST00000481991 C19orf67A6NJJ6 358 aa9.13□□□□□ -0.95
USP54-213ENST00000481991 H0Y858 1186 aa9.13□□□□□ -0.95
USP54-213ENST00000481991 NBNO60934 754 aa9.13□□□□□ -0.95
USP54-213ENST00000481991 EFCAB14O75071 495 aa9.13□□□□□ -0.95
USP54-213ENST00000481991 CKBP12277 381 aa9.13□□□□□ -0.95
USP54-213ENST00000481991 ALDH5A1P51649 535 aaPredicted RBP9.13□□□□□ -0.95
USP54-213ENST00000481991 TCTN1Q2MV58 587 aa9.13□□□□□ -0.95
USP54-213ENST00000481991 HSP90AB4PQ58FF6 505 aa9.13□□□□□ -0.95
USP54-213ENST00000481991 ZKSCAN2Q63HK3 967 aa9.13□□□□□ -0.95
USP54-213ENST00000481991 ZSCAN25Q6NSZ9 544 aa9.13□□□□□ -0.95
USP54-213ENST00000481991 TRIM67Q6ZTA4 783 aa9.13□□□□□ -0.95
USP54-213ENST00000481991 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.13□□□□□ -0.95
USP54-213ENST00000481991 RPAINQ86UA6 219 aa9.13□□□□□ -0.95
USP54-213ENST00000481991 RPAP2Q8IXW5 612 aaPredicted RBP9.13□□□□□ -0.95
USP54-213ENST00000481991 TRMT2AQ8IZ69 625 aaKnown RBP9.13□□□□□ -0.95
USP54-213ENST00000481991 RHPN1Q8TCX5 695 aa9.13□□□□□ -0.95
USP54-213ENST00000481991 PUS7LQ9H0K6 701 aaKnown RBP9.13□□□□□ -0.95
USP54-213ENST00000481991 NSUN3Q9H649 340 aaKnown RBP9.13□□□□□ -0.95
USP54-213ENST00000481991 TLR9Q9NR96 1032 aa9.13□□□□□ -0.95
USP54-213ENST00000481991 MTMR4Q9NYA4 1195 aa9.13□□□□□ -0.95
USP54-213ENST00000481991 NKRFO15226 690 aaKnown RBP eCLIP9.12□□□□□ -0.95
USP54-213ENST00000481991 NCK2O43639 380 aa9.12□□□□□ -0.95
USP54-213ENST00000481991 PARNO95453 639 aaKnown RBP9.12□□□□□ -0.95
USP54-213ENST00000481991 CASTP20810 708 aaKnown RBP9.12□□□□□ -0.95
USP54-213ENST00000481991 TFAP4Q01664 338 aa9.12□□□□□ -0.95
USP54-213ENST00000481991 TCF15Q12870 199 aa9.12□□□□□ -0.95
USP54-213ENST00000481991 GPNMBQ14956 572 aa9.12□□□□□ -0.95
USP54-213ENST00000481991 CCDC96Q2M329 555 aa9.12□□□□□ -0.95
USP54-213ENST00000481991 HERC4Q5GLZ8 1057 aaPredicted RBP9.12□□□□□ -0.95
USP54-213ENST00000481991 SEPT14Q6ZU15 432 aa9.12□□□□□ -0.95
USP54-213ENST00000481991 DHX37Q8IY37 1157 aaKnown RBP9.12□□□□□ -0.95
USP54-213ENST00000481991 TMEM192Q8IY95 271 aa9.12□□□□□ -0.95
USP54-213ENST00000481991 GMCL1P1Q8NEA9 526 aa9.12□□□□□ -0.95
USP54-213ENST00000481991 AFG1LQ8WV93 481 aa9.12□□□□□ -0.95
USP54-213ENST00000481991 MKL1Q969V6 931 aa9.12□□□□□ -0.95
USP54-213ENST00000481991 PRR12Q9ULL5 1215 aa9.12□□□□□ -0.95
USP54-213ENST00000481991 MYH8P13535 1937 aa9.11□□□□□ -0.95
USP54-213ENST00000481991 PARP14Q460N5 1801 aa9.11□□□□□ -0.95
USP54-213ENST00000481991 B4DLN1 442 aa9.11□□□□□ -0.95
USP54-213ENST00000481991 H3BNC9 293 aa9.11□□□□□ -0.95
USP54-213ENST00000481991 MBTPS2O43462 519 aa9.11□□□□□ -0.95
USP54-213ENST00000481991 KDM4AO75164 1064 aa9.11□□□□□ -0.95
USP54-213ENST00000481991 SLC16A2P36021 539 aa9.11□□□□□ -0.95
USP54-213ENST00000481991 MRPL12P52815 198 aaKnown RBP9.11□□□□□ -0.95
USP54-213ENST00000481991 ZNF200P98182 395 aaPredicted RBP9.11□□□□□ -0.95
USP54-213ENST00000481991 DLX2Q07687 328 aaPredicted RBP9.11□□□□□ -0.95
USP54-213ENST00000481991 PKN1Q16512 942 aa9.11□□□□□ -0.95
USP54-213ENST00000481991 LY6KQ17RY6 165 aa9.11□□□□□ -0.95
USP54-213ENST00000481991 ZNF618Q5T7W0 954 aa9.11□□□□□ -0.95
USP54-213ENST00000481991 RCSD1Q6JBY9 416 aa9.11□□□□□ -0.95
USP54-213ENST00000481991 ZBTB33Q86T24 672 aa9.11□□□□□ -0.95
USP54-213ENST00000481991 DBF4BQ8NFT6 615 aa9.11□□□□□ -0.95
USP54-213ENST00000481991 SCFD2Q8WU76 684 aa9.11□□□□□ -0.95
USP54-213ENST00000481991 SAMD11Q96NU1 681 aa9.11□□□□□ -0.95
USP54-213ENST00000481991 IRF2BPLQ9H1B7 796 aa9.11□□□□□ -0.95
USP54-213ENST00000481991 HDAC6Q9UBN7 1215 aa9.11□□□□□ -0.95
USP54-213ENST00000481991 STX8Q9UNK0 236 aa9.11□□□□□ -0.95
USP54-213ENST00000481991 TRIP12Q14669 1992 aaPredicted RBP9.11□□□□□ -0.95
USP54-213ENST00000481991 BRWD1Q9NSI6 2320 aa9.11□□□□□ -0.95
USP54-213ENST00000481991 TET1Q8NFU7 2136 aa9.11□□□□□ -0.95
USP54-213ENST00000481991 BAZ2AQ9UIF9 1905 aaKnown RBP9.11□□□□□ -0.95
USP54-213ENST00000481991 A6NJR5 290 aa9.1□□□□□ -0.95
USP54-213ENST00000481991 GSG1L2A8MUP6 293 aa9.1□□□□□ -0.95
USP54-213ENST00000481991 NFIBO00712 420 aa9.1□□□□□ -0.95
USP54-213ENST00000481991 SORBS3O60504 671 aa9.1□□□□□ -0.95
USP54-213ENST00000481991 LGR5O75473 907 aa9.1□□□□□ -0.95
USP54-213ENST00000481991 SLC3A2P08195 630 aaKnown RBP9.1□□□□□ -0.95
USP54-213ENST00000481991 CTNNB1P35222 781 aa9.1□□□□□ -0.95
USP54-213ENST00000481991 GTF2F1P35269 517 aaKnown RBP eCLIP9.1□□□□□ -0.95
USP54-213ENST00000481991 THPOP40225 353 aa9.1□□□□□ -0.95
USP54-213ENST00000481991 NDUFV1P49821 464 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms