RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 ARHGAP4P98171 946 aa11.55□□□□□ -0.56
USP39-215ENST00000481409 SETQ01105 290 aaPredicted RBP11.55□□□□□ -0.56
USP39-215ENST00000481409 UBE2SQ16763 222 aa11.55□□□□□ -0.56
USP39-215ENST00000481409 Q4G0T1 1027 aa11.55□□□□□ -0.56
USP39-215ENST00000481409 NIPA1Q7RTP0 329 aa11.55□□□□□ -0.56
USP39-215ENST00000481409 FAM43AQ8N2R8 423 aa11.55□□□□□ -0.56
USP39-215ENST00000481409 KRI1Q8N9T8 703 aaKnown RBP11.55□□□□□ -0.56
USP39-215ENST00000481409 RASGRP4Q8TDF6 673 aa11.55□□□□□ -0.56
USP39-215ENST00000481409 SYTL5Q8TDW5 730 aaPredicted RBP11.55□□□□□ -0.56
USP39-215ENST00000481409 MBOAT7Q96N66 472 aa11.55□□□□□ -0.56
USP39-215ENST00000481409 IWS1Q96ST2 819 aa11.55□□□□□ -0.56
USP39-215ENST00000481409 PTPN18Q99952 460 aa11.55□□□□□ -0.56
USP39-215ENST00000481409 MOV10L1Q9BXT6 1211 aaKnown RBP11.55□□□□□ -0.56
USP39-215ENST00000481409 ZFYVE28Q9HCC9 887 aa11.55□□□□□ -0.56
USP39-215ENST00000481409 LMBRD1Q9NUN5 540 aa11.55□□□□□ -0.56
USP39-215ENST00000481409 CYP39A1Q9NYL5 469 aa11.55□□□□□ -0.56
USP39-215ENST00000481409 ADD3Q9UEY8 706 aaKnown RBP11.55□□□□□ -0.56
USP39-215ENST00000481409 PCDHB6Q9Y5E3 794 aa11.55□□□□□ -0.56
USP39-215ENST00000481409 SRPRBQ9Y5M8 271 aaKnown RBP11.55□□□□□ -0.56
USP39-215ENST00000481409 CLIC4Q9Y696 253 aa11.55□□□□□ -0.56
USP39-215ENST00000481409 NFIBO00712 420 aa11.54□□□□□ -0.56
USP39-215ENST00000481409 MAFGO15525 162 aa11.54□□□□□ -0.56
USP39-215ENST00000481409 NEMFO60524 1076 aa11.54□□□□□ -0.56
USP39-215ENST00000481409 CCNT1O60563 726 aaKnown RBP11.54□□□□□ -0.56
USP39-215ENST00000481409 TLR2O60603 784 aa11.54□□□□□ -0.56
USP39-215ENST00000481409 PRPF40AO75400 957 aaKnown RBP11.54□□□□□ -0.56
USP39-215ENST00000481409 BCRP11274 1271 aa11.54□□□□□ -0.56
USP39-215ENST00000481409 PTPREP23469 700 aa11.54□□□□□ -0.56
USP39-215ENST00000481409 MAPK4P31152 587 aa11.54□□□□□ -0.56
USP39-215ENST00000481409 ME1P48163 572 aa11.54□□□□□ -0.56
USP39-215ENST00000481409 LETM2Q2VYF4 491 aa11.54□□□□□ -0.56
USP39-215ENST00000481409 FOXD4L6Q3SYB3 417 aaPredicted RBP11.54□□□□□ -0.56
USP39-215ENST00000481409 MUM1L1Q5H9M0 696 aa11.54□□□□□ -0.56
USP39-215ENST00000481409 PCNX4Q63HM2 1172 aa11.54□□□□□ -0.56
USP39-215ENST00000481409 FOXD4L3Q6VB84 417 aaPredicted RBP11.54□□□□□ -0.56
USP39-215ENST00000481409 SLFN12Q8IYM2 578 aa11.54□□□□□ -0.56
USP39-215ENST00000481409 ANKRD35Q8N283 1001 aa11.54□□□□□ -0.56
USP39-215ENST00000481409 SP7Q8TDD2 431 aaPredicted RBP11.54□□□□□ -0.56
USP39-215ENST00000481409 NSUN6Q8TEA1 469 aaKnown RBP11.54□□□□□ -0.56
USP39-215ENST00000481409 PYM1Q9BRP8 204 aaKnown RBP11.54□□□□□ -0.56
USP39-215ENST00000481409 PAGR1Q9BTK6 254 aa11.54□□□□□ -0.56
USP39-215ENST00000481409 CFHR5Q9BXR6 569 aa11.54□□□□□ -0.56
USP39-215ENST00000481409 RAB34Q9BZG1 259 aa11.54□□□□□ -0.56
USP39-215ENST00000481409 TMEM260Q9NX78 707 aa11.54□□□□□ -0.56
USP39-215ENST00000481409 RIPK3Q9Y572 518 aa11.54□□□□□ -0.56
USP39-215ENST00000481409 STK24Q9Y6E0 443 aa11.54□□□□□ -0.56
USP39-215ENST00000481409 MYH7BA7E2Y1 1941 aa11.54□□□□□ -0.56
USP39-215ENST00000481409 SMCHD1A6NHR9 2005 aa11.53□□□□□ -0.56
USP39-215ENST00000481409 SLC26A4O43511 780 aa11.53□□□□□ -0.56
USP39-215ENST00000481409 CA12O43570 354 aa11.53□□□□□ -0.56
USP39-215ENST00000481409 OR52Z1P0C646 297 aa11.53□□□□□ -0.56
USP39-215ENST00000481409 CYP2C8P10632 490 aa11.53□□□□□ -0.56
USP39-215ENST00000481409 FCER1AP12319 257 aa11.53□□□□□ -0.56
USP39-215ENST00000481409 ERCC3P19447 782 aa11.53□□□□□ -0.56
USP39-215ENST00000481409 HOXA13P31271 388 aaPredicted RBP11.53□□□□□ -0.56
USP39-215ENST00000481409 MCM7P33993 719 aa11.53□□□□□ -0.56
USP39-215ENST00000481409 LONP1P36776 959 aaKnown RBP11.53□□□□□ -0.56
USP39-215ENST00000481409 MKRN3Q13064 507 aaKnown RBP11.53□□□□□ -0.56
USP39-215ENST00000481409 PTGDRQ13258 359 aa11.53□□□□□ -0.56
USP39-215ENST00000481409 BAATQ14032 418 aaPredicted RBP11.53□□□□□ -0.56
USP39-215ENST00000481409 KCTD2Q14681 263 aa11.53□□□□□ -0.56
USP39-215ENST00000481409 TAF1CQ15572 869 aaPredicted RBP11.53□□□□□ -0.56
USP39-215ENST00000481409 ZNF174Q15697 407 aa11.53□□□□□ -0.56
USP39-215ENST00000481409 POTEEQ6S8J3 1075 aa11.53□□□□□ -0.56
USP39-215ENST00000481409 NSMFQ6X4W1 530 aa11.53□□□□□ -0.56
USP39-215ENST00000481409 FCHSD1Q86WN1 690 aa11.53□□□□□ -0.56
USP39-215ENST00000481409 NCAPG2Q86XI2 1143 aa11.53□□□□□ -0.56
USP39-215ENST00000481409 CCAR1Q8IX12 1150 aaKnown RBP11.53□□□□□ -0.56
USP39-215ENST00000481409 AK8Q96MA6 479 aa11.53□□□□□ -0.56
USP39-215ENST00000481409 FAM20AQ96MK3 541 aa11.53□□□□□ -0.56
USP39-215ENST00000481409 A1CFQ9NQ94 594 aaKnown RBP11.53□□□□□ -0.56
USP39-215ENST00000481409 HOMER2Q9NSB8 354 aa11.53□□□□□ -0.56
USP39-215ENST00000481409 SLC5A4Q9NY91 659 aa11.53□□□□□ -0.56
USP39-215ENST00000481409 ADGRA2Q96PE1 1338 aa11.53□□□□□ -0.56
USP39-215ENST00000481409 FAM205CA6NFA0 338 aa11.52□□□□□ -0.57
USP39-215ENST00000481409 IGF2BP3O00425 579 aaKnown RBP eCLIP11.52□□□□□ -0.57
USP39-215ENST00000481409 ADAMTS3O15072 1205 aa11.52□□□□□ -0.57
USP39-215ENST00000481409 CMA1P23946 247 aa11.52□□□□□ -0.57
USP39-215ENST00000481409 CEBPZQ03701 1054 aaKnown RBP11.52□□□□□ -0.57
USP39-215ENST00000481409 PDIA5Q14554 519 aa11.52□□□□□ -0.57
USP39-215ENST00000481409 CALCRLQ16602 461 aa11.52□□□□□ -0.57
USP39-215ENST00000481409 TMEM266Q2M3C6 531 aa11.52□□□□□ -0.57
USP39-215ENST00000481409 KLHL40Q2TBA0 621 aa11.52□□□□□ -0.57
USP39-215ENST00000481409 CEP55Q53EZ4 464 aa11.52□□□□□ -0.57
USP39-215ENST00000481409 ARHGEF16Q5VV41 709 aa11.52□□□□□ -0.57
USP39-215ENST00000481409 DTHD1Q6ZMT9 781 aa11.52□□□□□ -0.57
USP39-215ENST00000481409 KCTD17Q8N5Z5 321 aa11.52□□□□□ -0.57
USP39-215ENST00000481409 C4orf32Q8N8J7 132 aa11.52□□□□□ -0.57
USP39-215ENST00000481409 SYAP1Q96A49 352 aaPredicted RBP11.52□□□□□ -0.57
USP39-215ENST00000481409 CDHR1Q96JP9 859 aa11.52□□□□□ -0.57
USP39-215ENST00000481409 CAPNS2Q96L46 248 aa11.52□□□□□ -0.57
USP39-215ENST00000481409 RMDN3Q96TC7 470 aa11.52□□□□□ -0.57
USP39-215ENST00000481409 TXNRD2Q9NNW7 524 aa11.52□□□□□ -0.57
USP39-215ENST00000481409 PXMP2Q9NR77 195 aa11.52□□□□□ -0.57
USP39-215ENST00000481409 DDX25Q9UHL0 483 aaKnown RBP11.52□□□□□ -0.57
USP39-215ENST00000481409 PCDHA7Q9UN72 937 aa11.52□□□□□ -0.57
USP39-215ENST00000481409 DIS3Q9Y2L1 958 aaKnown RBP11.52□□□□□ -0.57
USP39-215ENST00000481409 IVNS1ABPQ9Y6Y0 642 aa11.52□□□□□ -0.57
USP39-215ENST00000481409 ZNF236Q9UL36 1845 aa11.51□□□□□ -0.57
USP39-215ENST00000481409 DNAJC25-GNG10A0A024R161 153 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms