RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 PCNTO95613 3336 aa9.46□□□□□ -0.9
USP54-212ENST00000480210 hCG_1642624A0A1W2PR95 340 aa9.45□□□□□ -0.9
USP54-212ENST00000480210 OPLAHO14841 1288 aa9.45□□□□□ -0.9
USP54-212ENST00000480210 MAFGO15525 162 aa9.45□□□□□ -0.9
USP54-212ENST00000480210 MSCO60682 206 aa9.45□□□□□ -0.9
USP54-212ENST00000480210 CD2BP2O95400 341 aaKnown RBP9.45□□□□□ -0.9
USP54-212ENST00000480210 IGHA2P01877 340 aa9.45□□□□□ -0.9
USP54-212ENST00000480210 PGK2P07205 417 aa9.45□□□□□ -0.9
USP54-212ENST00000480210 CLK2P49760 499 aaKnown RBP9.45□□□□□ -0.9
USP54-212ENST00000480210 ST3GAL1Q11201 340 aa9.45□□□□□ -0.9
USP54-212ENST00000480210 STXBP2Q15833 593 aa9.45□□□□□ -0.9
USP54-212ENST00000480210 SLC9C1Q4G0N8 1177 aa9.45□□□□□ -0.9
USP54-212ENST00000480210 KCNV1Q6PIU1 500 aa9.45□□□□□ -0.9
USP54-212ENST00000480210 BLIDQ8IZY5 108 aa9.45□□□□□ -0.9
USP54-212ENST00000480210 REXO1Q8N1G1 1221 aaKnown RBP9.45□□□□□ -0.9
USP54-212ENST00000480210 GPKOWQ92917 476 aaPredicted RBP eCLIP9.45□□□□□ -0.9
USP54-212ENST00000480210 C8orf76Q96K31 380 aa9.45□□□□□ -0.9
USP54-212ENST00000480210 NAP1L4Q99733 375 aaKnown RBP9.45□□□□□ -0.9
USP54-212ENST00000480210 PHF20Q9BVI0 1012 aa9.45□□□□□ -0.9
USP54-212ENST00000480210 PXMP2Q9NR77 195 aa9.45□□□□□ -0.9
USP54-212ENST00000480210 CNPY2Q9Y2B0 182 aa9.45□□□□□ -0.9
USP54-212ENST00000480210 PTCH2Q9Y6C5 1203 aa9.45□□□□□ -0.9
USP54-212ENST00000480210 SOWAHBA6NEL2 793 aa9.44□□□□□ -0.9
USP54-212ENST00000480210 RRP9O43818 475 aaKnown RBP9.44□□□□□ -0.9
USP54-212ENST00000480210 EIF3JO75822 258 aaKnown RBP9.44□□□□□ -0.9
USP54-212ENST00000480210 HSP90AA1P07900 732 aaKnown RBP9.44□□□□□ -0.9
USP54-212ENST00000480210 NR3C2P08235 984 aa9.44□□□□□ -0.9
USP54-212ENST00000480210 EDNRBP24530 442 aa9.44□□□□□ -0.9
USP54-212ENST00000480210 CCND2P30279 289 aa9.44□□□□□ -0.9
USP54-212ENST00000480210 USP11P51784 963 aa9.44□□□□□ -0.9
USP54-212ENST00000480210 CAP1Q01518 475 aa9.44□□□□□ -0.9
USP54-212ENST00000480210 PDE4DQ08499 809 aa9.44□□□□□ -0.9
USP54-212ENST00000480210 SLC30A10Q6XR72 485 aa9.44□□□□□ -0.9
USP54-212ENST00000480210 KRT25Q7Z3Z0 450 aa9.44□□□□□ -0.9
USP54-212ENST00000480210 FBXO18Q8NFZ0 1043 aa9.44□□□□□ -0.9
USP54-212ENST00000480210 TBC1D5Q92609 795 aa9.44□□□□□ -0.9
USP54-212ENST00000480210 ARMC5Q96C12 935 aa9.44□□□□□ -0.9
USP54-212ENST00000480210 CDHR1Q96JP9 859 aa9.44□□□□□ -0.9
USP54-212ENST00000480210 TAAR1Q96RJ0 339 aa9.44□□□□□ -0.9
USP54-212ENST00000480210 PDCD2LQ9BRP1 358 aa9.44□□□□□ -0.9
USP54-212ENST00000480210 HMX1Q9NP08 348 aaPredicted RBP9.44□□□□□ -0.9
USP54-212ENST00000480210 VTA1Q9NP79 307 aa9.44□□□□□ -0.9
USP54-212ENST00000480210 VPS54Q9P1Q0 977 aa9.44□□□□□ -0.9
USP54-212ENST00000480210 BIN2Q9UBW5 565 aaPredicted RBP9.44□□□□□ -0.9
USP54-212ENST00000480210 PCDHA6Q9UN73 950 aa9.44□□□□□ -0.9
USP54-212ENST00000480210 PCDHA8Q9Y5H6 950 aa9.44□□□□□ -0.9
USP54-212ENST00000480210 FRMPD4Q14CM0 1322 aa9.44□□□□□ -0.9
USP54-212ENST00000480210 RPTORQ8N122 1335 aa9.44□□□□□ -0.9
USP54-212ENST00000480210 NKRFO15226 690 aaKnown RBP eCLIP9.43□□□□□ -0.9
USP54-212ENST00000480210 JAK2O60674 1132 aa9.43□□□□□ -0.9
USP54-212ENST00000480210 ECM2O94769 699 aaPredicted RBP9.43□□□□□ -0.9
USP54-212ENST00000480210 MMP1P03956 469 aa9.43□□□□□ -0.9
USP54-212ENST00000480210 CYP3A4P08684 503 aa9.43□□□□□ -0.9
USP54-212ENST00000480210 TGFB3P10600 412 aa9.43□□□□□ -0.9
USP54-212ENST00000480210 GJB2P29033 226 aa9.43□□□□□ -0.9
USP54-212ENST00000480210 KRT2P35908 639 aa9.43□□□□□ -0.9
USP54-212ENST00000480210 CNTN2Q02246 1040 aa9.43□□□□□ -0.9
USP54-212ENST00000480210 PGM5Q15124 567 aa9.43□□□□□ -0.9
USP54-212ENST00000480210 GNPTABQ3T906 1256 aa9.43□□□□□ -0.9
USP54-212ENST00000480210 L1TD1Q5T7N2 865 aaKnown RBP9.43□□□□□ -0.9
USP54-212ENST00000480210 MAP3K21Q5TCX8 1036 aa9.43□□□□□ -0.9
USP54-212ENST00000480210 PCNX4Q63HM2 1172 aa9.43□□□□□ -0.9
USP54-212ENST00000480210 LARP1BQ659C4 914 aaKnown RBP9.43□□□□□ -0.9
USP54-212ENST00000480210 KRT40Q6A162 431 aa9.43□□□□□ -0.9
USP54-212ENST00000480210 IQSEC1Q6DN90 963 aa9.43□□□□□ -0.9
USP54-212ENST00000480210 TYW1BQ6NUM6 668 aa9.43□□□□□ -0.9
USP54-212ENST00000480210 USP17L6PQ6QN14 398 aa9.43□□□□□ -0.9
USP54-212ENST00000480210 ARMCX2Q7L311 632 aa9.43□□□□□ -0.9
USP54-212ENST00000480210 NLRX1Q86UT6 975 aa9.43□□□□□ -0.9
USP54-212ENST00000480210 VSIG10LQ86VR7 867 aa9.43□□□□□ -0.9
USP54-212ENST00000480210 FCHSD1Q86WN1 690 aa9.43□□□□□ -0.9
USP54-212ENST00000480210 TRIB2Q92519 343 aa9.43□□□□□ -0.9
USP54-212ENST00000480210 MCOLN1Q9GZU1 580 aa9.43□□□□□ -0.9
USP54-212ENST00000480210 FOXP1Q9H334 677 aaPredicted RBP9.43□□□□□ -0.9
USP54-212ENST00000480210 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.43□□□□□ -0.9
USP54-212ENST00000480210 Q9Y3F1 56 aa9.43□□□□□ -0.9
USP54-212ENST00000480210 CCDC194A0A1B0GVG4 234 aa9.42□□□□□ -0.9
USP54-212ENST00000480210 RBM47A0AV96 593 aaKnown RBP9.42□□□□□ -0.9
USP54-212ENST00000480210 H3BQV1 296 aa9.42□□□□□ -0.9
USP54-212ENST00000480210 M0R2N6 131 aa9.42□□□□□ -0.9
USP54-212ENST00000480210 SNAI1O95863 264 aaPredicted RBP9.42□□□□□ -0.9
USP54-212ENST00000480210 AKR1A1P14550 325 aa9.42□□□□□ -0.9
USP54-212ENST00000480210 HOXA13P31271 388 aaPredicted RBP9.42□□□□□ -0.9
USP54-212ENST00000480210 SREBF1P36956 1147 aa9.42□□□□□ -0.9
USP54-212ENST00000480210 ACVR2BQ13705 512 aa9.42□□□□□ -0.9
USP54-212ENST00000480210 NONOQ15233 471 aaKnown RBP eCLIP9.42□□□□□ -0.9
USP54-212ENST00000480210 IFFO2Q5TF58 517 aa9.42□□□□□ -0.9
USP54-212ENST00000480210 MOXD1Q6UVY6 613 aa9.42□□□□□ -0.9
USP54-212ENST00000480210 NIPA1Q7RTP0 329 aa9.42□□□□□ -0.9
USP54-212ENST00000480210 GIMAP8Q8ND71 665 aaPredicted RBP9.42□□□□□ -0.9
USP54-212ENST00000480210 FGD4Q96M96 766 aa9.42□□□□□ -0.9
USP54-212ENST00000480210 TMEM106CQ9BVX2 250 aa9.42□□□□□ -0.9
USP54-212ENST00000480210 ANO3Q9BYT9 981 aa9.42□□□□□ -0.9
USP54-212ENST00000480210 FAM184BQ9ULE4 1060 aa9.42□□□□□ -0.9
USP54-212ENST00000480210 KAT6AQ92794 2004 aa9.41□□□□□ -0.9
USP54-212ENST00000480210 SEPT4O43236 478 aa9.41□□□□□ -0.9
USP54-212ENST00000480210 INHAP05111 366 aa9.41□□□□□ -0.9
USP54-212ENST00000480210 CYBAP13498 195 aa9.41□□□□□ -0.9
USP54-212ENST00000480210 PRKAR2AP13861 404 aaKnown RBP9.41□□□□□ -0.9
USP54-212ENST00000480210 TAL1P17542 331 aaPredicted RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms