RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 PGAP2Q9UHJ9 254 aa7.35□□□□□ -1.23
SF3B1-209ENST00000479532 POLIQ9UNA4 740 aa7.35□□□□□ -1.23
SF3B1-209ENST00000479532 FOCADQ5VW36 1801 aa7.35□□□□□ -1.23
SF3B1-209ENST00000479532 POLR2AP24928 1970 aaKnown RBP7.35□□□□□ -1.23
SF3B1-209ENST00000479532 CDK5RAP2Q96SN8 1893 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 RPAP1Q9BWH6 1393 aaPredicted RBP7.34□□□□□ -1.23
SF3B1-209ENST00000479532 RAD50Q92878 1312 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 C9orf172C9J069 976 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 TREHO43280 583 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 GPAA1O43292 621 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 CDC45O75419 566 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 APPP05067 770 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 HLA-DOAP06340 250 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 P4HBP07237 508 aaKnown RBP7.34□□□□□ -1.23
SF3B1-209ENST00000479532 CD33P20138 364 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 ATP4AP20648 1035 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 MZF1P28698 734 aaPredicted RBP7.34□□□□□ -1.23
SF3B1-209ENST00000479532 DYNLL1P63167 89 aaKnown RBP7.34□□□□□ -1.23
SF3B1-209ENST00000479532 FGD1P98174 961 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 TAGLNQ01995 201 aaKnown RBP7.34□□□□□ -1.23
SF3B1-209ENST00000479532 SUPT20HL1Q3ZLR7 823 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 MAP1SQ66K74 1059 aaPredicted RBP7.34□□□□□ -1.23
SF3B1-209ENST00000479532 ADGRA1Q86SQ6 560 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 SH3RF3Q8TEJ3 882 aaPredicted RBP7.34□□□□□ -1.23
SF3B1-209ENST00000479532 ZNF384Q8TF68 577 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 TGFBRAP1Q8WUH2 860 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 FAM151AQ8WW52 585 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 IDI2Q9BXS1 227 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 DEFB129Q9H1M3 183 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 DHX36Q9H2U1 1008 aaKnown RBP7.34□□□□□ -1.23
SF3B1-209ENST00000479532 ATP8A2Q9NTI2 1148 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 PCDHAC2Q9Y5I4 1007 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 SLC4A4Q9Y6R1 1079 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 MYH1P12882 1939 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 TRPM7Q96QT4 1865 aa7.34□□□□□ -1.23
SF3B1-209ENST00000479532 CCDC171Q6TFL3 1326 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 TGFBR3LH3BV60 316 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 PDGFAP04085 211 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 POLR3DP05423 398 aaPredicted RBP7.33□□□□□ -1.24
SF3B1-209ENST00000479532 TDO2P48775 406 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 CACNB3P54284 484 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 RHBDL3P58872 404 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 TCP10Q12799 353 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 NMIQ13287 307 aaPredicted RBP7.33□□□□□ -1.24
SF3B1-209ENST00000479532 RASA3Q14644 834 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 COL19A1Q14993 1142 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 HIF1AQ16665 826 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 DCAF15Q66K64 600 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 GIMAP6Q6P9H5 292 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 CWC27Q6UX04 472 aaKnown RBP7.33□□□□□ -1.24
SF3B1-209ENST00000479532 KIAA1211Q6ZU35 1233 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 USP48Q86UV5 1035 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 SKAP1Q86WV1 359 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 MAPKAPK5Q8IW41 473 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 LCORLQ8N3X6 602 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 ZNF280CQ8ND82 737 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 GPR152Q8TDT2 470 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 OSBP2Q969R2 916 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 MRRFQ96E11 262 aaKnown RBP7.33□□□□□ -1.24
SF3B1-209ENST00000479532 HSH2DQ96JZ2 352 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 SUSD3Q96L08 255 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 DMRTB1Q96MA1 342 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 FAM129BQ96TA1 746 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 RIOK1Q9BRS2 568 aaKnown RBP7.33□□□□□ -1.24
SF3B1-209ENST00000479532 PUS7LQ9H0K6 701 aaKnown RBP7.33□□□□□ -1.24
SF3B1-209ENST00000479532 OSBPL5Q9H0X9 879 aaPredicted RBP7.33□□□□□ -1.24
SF3B1-209ENST00000479532 ARMT1Q9H993 441 aa7.33□□□□□ -1.24
SF3B1-209ENST00000479532 ASTN2O75129 1339 aaPredicted RBP7.32□□□□□ -1.24
SF3B1-209ENST00000479532 FLT1P17948 1338 aa7.32□□□□□ -1.24
SF3B1-209ENST00000479532 COL2A1P02458 1487 aaPredicted RBP7.32□□□□□ -1.24
SF3B1-209ENST00000479532 ELOA3CA0A087WX78 387 aaPredicted RBP7.32□□□□□ -1.24
SF3B1-209ENST00000479532 DCDC2BA2VCK2 349 aa7.32□□□□□ -1.24
SF3B1-209ENST00000479532 ELOA3DA6NLF2 546 aaPredicted RBP7.32□□□□□ -1.24
SF3B1-209ENST00000479532 ADM5C9JUS6 153 aa7.32□□□□□ -1.24
SF3B1-209ENST00000479532 M0R2C6 588 aa7.32□□□□□ -1.24
SF3B1-209ENST00000479532 GPR182O15218 404 aa7.32□□□□□ -1.24
SF3B1-209ENST00000479532 WDHD1O75717 1129 aaPredicted RBP7.32□□□□□ -1.24
SF3B1-209ENST00000479532 MICAL2O94851 1124 aa7.32□□□□□ -1.24
SF3B1-209ENST00000479532 IGHA2P01877 340 aa7.32□□□□□ -1.24
SF3B1-209ENST00000479532 SLC3A2P08195 630 aaKnown RBP7.32□□□□□ -1.24
SF3B1-209ENST00000479532 MAPTP10636 758 aaKnown RBP7.32□□□□□ -1.24
SF3B1-209ENST00000479532 CHMLP26374 656 aa7.32□□□□□ -1.24
SF3B1-209ENST00000479532 FMR1Q06787 632 aaKnown RBP eCLIP7.32□□□□□ -1.247e-8■■□□□ 13.1
SF3B1-209ENST00000479532 ELOA3BQ3SY89 546 aa7.32□□□□□ -1.24
SF3B1-209ENST00000479532 ARMC9Q7Z3E5 817 aa7.32□□□□□ -1.24
SF3B1-209ENST00000479532 TTC6Q86TZ1 520 aa7.32□□□□□ -1.24
SF3B1-209ENST00000479532 GJD3Q8N144 294 aa7.32□□□□□ -1.24
SF3B1-209ENST00000479532 CRACR2BQ8N4Y2 399 aaPredicted RBP7.32□□□□□ -1.24
SF3B1-209ENST00000479532 C2orf69Q8N8R5 385 aa7.32□□□□□ -1.24
SF3B1-209ENST00000479532 ELOA3Q8NG57 546 aa7.32□□□□□ -1.24
SF3B1-209ENST00000479532 TP53INP1Q96A56 240 aa7.32□□□□□ -1.24
SF3B1-209ENST00000479532 CDCA5Q96FF9 252 aa7.32□□□□□ -1.24
SF3B1-209ENST00000479532 FAM227BQ96M60 508 aa7.32□□□□□ -1.24
SF3B1-209ENST00000479532 CSRNP1Q96S65 589 aa7.32□□□□□ -1.24
SF3B1-209ENST00000479532 STRBPQ96SI9 672 aaKnown RBP7.32□□□□□ -1.24
SF3B1-209ENST00000479532 GLIS2Q9BZE0 524 aaPredicted RBP7.32□□□□□ -1.24
SF3B1-209ENST00000479532 NAPBQ9H115 298 aa7.32□□□□□ -1.24
SF3B1-209ENST00000479532 ZNF408Q9H9D4 720 aa7.32□□□□□ -1.24
SF3B1-209ENST00000479532 KIAA1522Q9P206 1035 aaPredicted RBP7.32□□□□□ -1.24
SF3B1-209ENST00000479532 ARPP21Q9UBL0 812 aaPredicted RBP7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms