RNA–Protein interactions for RNA: ENST00000475558.5

SHQ1-207, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 5

Gene SHQ1, Length 666 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-207ENST00000475558 IRX3P78415 501 aaPredicted RBP8.04□□□□□ -1.12
SHQ1-207ENST00000475558 FOXK1P85037 733 aa8.04□□□□□ -1.12
SHQ1-207ENST00000475558 COL9A3Q14050 684 aaPredicted RBP8.04□□□□□ -1.12
SHQ1-207ENST00000475558 NFKBIBQ15653 356 aa8.04□□□□□ -1.12
SHQ1-207ENST00000475558 KRT40Q6A162 431 aa8.04□□□□□ -1.12
SHQ1-207ENST00000475558 MCTP1Q6DN14 999 aa8.04□□□□□ -1.12
SHQ1-207ENST00000475558 SIAH1Q8IUQ4 282 aa8.04□□□□□ -1.12
SHQ1-207ENST00000475558 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.04□□□□□ -1.12
SHQ1-207ENST00000475558 CCDC144CPQ8IYA2 1237 aa8.04□□□□□ -1.12
SHQ1-207ENST00000475558 PRPF38AQ8NAV1 312 aaKnown RBP8.04□□□□□ -1.12
SHQ1-207ENST00000475558 GPRC5AQ8NFJ5 357 aa8.04□□□□□ -1.12
SHQ1-207ENST00000475558 PHKBQ93100 1093 aa8.04□□□□□ -1.12
SHQ1-207ENST00000475558 NAP1L4Q99733 375 aaKnown RBP8.04□□□□□ -1.12
SHQ1-207ENST00000475558 MYL10Q9BUA6 226 aa8.04□□□□□ -1.12
SHQ1-207ENST00000475558 COL25A1Q9BXS0 654 aaPredicted RBP8.04□□□□□ -1.12
SHQ1-207ENST00000475558 BARHL2Q9NY43 387 aa8.04□□□□□ -1.12
SHQ1-207ENST00000475558 TMOD4Q9NZQ9 345 aa8.04□□□□□ -1.12
SHQ1-207ENST00000475558 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.04□□□□□ -1.12
SHQ1-207ENST00000475558 NOL7Q9UMY1 257 aaKnown RBP8.04□□□□□ -1.12
SHQ1-207ENST00000475558 ZDHHC9Q9Y397 364 aa8.04□□□□□ -1.12
SHQ1-207ENST00000475558 MORC2Q9Y6X9 1032 aaPredicted RBP8.04□□□□□ -1.12
SHQ1-207ENST00000475558 PFASO15067 1338 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 LOC285556D6RIA3 1793 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 FAM196BA6NMK8 535 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 HRO43593 1189 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 LETM1O95202 739 aaPredicted RBP8.03□□□□□ -1.12
SHQ1-207ENST00000475558 MBD3O95983 291 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 FOSP01100 380 aaPredicted RBP8.03□□□□□ -1.12
SHQ1-207ENST00000475558 RXRAP19793 462 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 MAPK4P31152 587 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 KRT2P35908 639 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 STAT2P52630 851 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 BACE1P56817 501 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 ORC2Q13416 577 aaPredicted RBP8.03□□□□□ -1.12
SHQ1-207ENST00000475558 PKN1Q16512 942 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 CCDC96Q2M329 555 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 CCAR1Q8IX12 1150 aaKnown RBP8.03□□□□□ -1.12
SHQ1-207ENST00000475558 CCDC82Q8N4S0 544 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 TMEM87AQ8NBN3 555 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 DAGLBQ8NCG7 672 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 GTF3C2Q8WUA4 911 aaPredicted RBP8.03□□□□□ -1.12
SHQ1-207ENST00000475558 MTMR8Q96EF0 704 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 C12orf42Q96LP6 360 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 P2RX7Q99572 595 aaKnown RBP8.03□□□□□ -1.12
SHQ1-207ENST00000475558 FEZ1Q99689 392 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 LBHD1Q9BQE6 289 aaPredicted RBP8.03□□□□□ -1.12
SHQ1-207ENST00000475558 AMNQ9BXJ7 453 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 ZMYND12Q9H0C1 365 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 RCOR1Q9UKL0 485 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 PCDHA4Q9UN74 947 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 CTDP1Q9Y5B0 961 aaPredicted RBP8.03□□□□□ -1.12
SHQ1-207ENST00000475558 ELP1O95163 1332 aa8.03□□□□□ -1.12
SHQ1-207ENST00000475558 PLXNB2O15031 1838 aa8.02□□□□□ -1.13
SHQ1-207ENST00000475558 ZBED4O75132 1171 aa8.02□□□□□ -1.13
SHQ1-207ENST00000475558 GDF11O95390 407 aa8.02□□□□□ -1.13
SHQ1-207ENST00000475558 PLEKHA8P1O95397 391 aa8.02□□□□□ -1.13
SHQ1-207ENST00000475558 YEATS4O95619 227 aa8.02□□□□□ -1.13
SHQ1-207ENST00000475558 NDUFB10O96000 172 aa8.02□□□□□ -1.13
SHQ1-207ENST00000475558 RGS2P41220 211 aa8.02□□□□□ -1.13
SHQ1-207ENST00000475558 HERVK_113P62684 666 aa8.02□□□□□ -1.13
SHQ1-207ENST00000475558 MDM2Q00987 491 aaPredicted RBP8.02□□□□□ -1.13
SHQ1-207ENST00000475558 CACNB2Q08289 660 aaPredicted RBP8.02□□□□□ -1.13
SHQ1-207ENST00000475558 IKQ13123 557 aaPredicted RBP8.02□□□□□ -1.13
SHQ1-207ENST00000475558 SF3A1Q15459 793 aaKnown RBP8.02□□□□□ -1.13
SHQ1-207ENST00000475558 LRRC26Q2I0M4 334 aa8.02□□□□□ -1.13
SHQ1-207ENST00000475558 SYDE2Q5VT97 1194 aa8.02□□□□□ -1.13
SHQ1-207ENST00000475558 KRT25Q7Z3Z0 450 aa8.02□□□□□ -1.13
SHQ1-207ENST00000475558 NOSTRINQ8IVI9 506 aa8.02□□□□□ -1.13
SHQ1-207ENST00000475558 ADGRF4Q8IZF3 695 aa8.02□□□□□ -1.13
SHQ1-207ENST00000475558 LRRC47Q8N1G4 583 aaKnown RBP8.02□□□□□ -1.13
SHQ1-207ENST00000475558 STAG2Q8N3U4 1231 aa8.02□□□□□ -1.13
SHQ1-207ENST00000475558 KCNG4Q8TDN1 519 aa8.02□□□□□ -1.13
SHQ1-207ENST00000475558 SYAP1Q96A49 352 aaPredicted RBP8.02□□□□□ -1.13
SHQ1-207ENST00000475558 PHF20Q9BVI0 1012 aa8.02□□□□□ -1.13
SHQ1-207ENST00000475558 VAT1LQ9HCJ6 419 aa8.02□□□□□ -1.13
SHQ1-207ENST00000475558 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.02□□□□□ -1.13
SHQ1-207ENST00000475558 POLR3EQ9NVU0 708 aa8.02□□□□□ -1.13
SHQ1-207ENST00000475558 RTEL1Q9NZ71 1219 aa8.02□□□□□ -1.13
SHQ1-207ENST00000475558 RBPJLQ9UBG7 517 aa8.02□□□□□ -1.13
SHQ1-207ENST00000475558 MRPL11Q9Y3B7 192 aaKnown RBP8.02□□□□□ -1.13
SHQ1-207ENST00000475558 RABGAP1Q9Y3P9 1069 aa8.02□□□□□ -1.13
SHQ1-207ENST00000475558 ATAD5Q96QE3 1844 aa8.01□□□□□ -1.13
SHQ1-207ENST00000475558 SMCO2A6NFE2 343 aa8.01□□□□□ -1.13
SHQ1-207ENST00000475558 USP17L15C9J2P7 530 aa8.01□□□□□ -1.13
SHQ1-207ENST00000475558 USP17L13C9JLJ4 530 aa8.01□□□□□ -1.13
SHQ1-207ENST00000475558 TMEM232C9JQI7 657 aa8.01□□□□□ -1.13
SHQ1-207ENST00000475558 USP17L11C9JVI0 530 aa8.01□□□□□ -1.13
SHQ1-207ENST00000475558 USP17L18D6R9N7 530 aa8.01□□□□□ -1.13
SHQ1-207ENST00000475558 USP17L22D6RA61 530 aa8.01□□□□□ -1.13
SHQ1-207ENST00000475558 USP17L17D6RBQ6 530 aa8.01□□□□□ -1.13
SHQ1-207ENST00000475558 USP17L19D6RCP7 530 aa8.01□□□□□ -1.13
SHQ1-207ENST00000475558 USP17L20D6RJB6 530 aa8.01□□□□□ -1.13
SHQ1-207ENST00000475558 LAD1O00515 517 aa8.01□□□□□ -1.13
SHQ1-207ENST00000475558 RAD21O60216 631 aa8.01□□□□□ -1.13
SHQ1-207ENST00000475558 PPP6R2O75170 966 aa8.01□□□□□ -1.13
SHQ1-207ENST00000475558 CCND3P30281 292 aaPredicted RBP8.01□□□□□ -1.13
SHQ1-207ENST00000475558 OAZ1P54368 228 aa8.01□□□□□ -1.13
SHQ1-207ENST00000475558 UBE2HP62256 183 aa8.01□□□□□ -1.13
SHQ1-207ENST00000475558 ERVK-9P63128 1117 aa8.01□□□□□ -1.13
SHQ1-207ENST00000475558 ERVK-24P63145 666 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms