RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 CYP4F3Q08477 520 aa6.21□□□□□ -1.42
CCDC88A-212ENST00000474059 RGL3Q3MIN7 710 aa6.21□□□□□ -1.42
CCDC88A-212ENST00000474059 C9orf131Q5VYM1 1079 aa6.21□□□□□ -1.42
CCDC88A-212ENST00000474059 CCDC81Q6ZN84 652 aa6.21□□□□□ -1.42
CCDC88A-212ENST00000474059 MIB1Q86YT6 1006 aa6.21□□□□□ -1.42
CCDC88A-212ENST00000474059 ARHGEF39Q8N4T4 335 aa6.21□□□□□ -1.42
CCDC88A-212ENST00000474059 INVSQ9Y283 1065 aa6.21□□□□□ -1.42
CCDC88A-212ENST00000474059 TCEAL1Q15170 157 aa6.2□□□□□ -1.42
CCDC88A-212ENST00000474059 TMEM87AQ8NBN3 555 aa6.2□□□□□ -1.42
CCDC88A-212ENST00000474059 FGD4Q96M96 766 aa6.2□□□□□ -1.42
CCDC88A-212ENST00000474059 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.2□□□□□ -1.42
CCDC88A-212ENST00000474059 A0A1W2PQH9 124 aa6.19□□□□□ -1.42
CCDC88A-212ENST00000474059 SGSM2O43147 1006 aa6.19□□□□□ -1.42
CCDC88A-212ENST00000474059 ZBTB7AO95365 584 aa6.19□□□□□ -1.42
CCDC88A-212ENST00000474059 CYP2C8P10632 490 aa6.19□□□□□ -1.42
CCDC88A-212ENST00000474059 ZNF76P36508 570 aa6.19□□□□□ -1.42
CCDC88A-212ENST00000474059 TTLL7Q6ZT98 887 aa6.19□□□□□ -1.42
CCDC88A-212ENST00000474059 STK32CQ86UX6 486 aa6.19□□□□□ -1.42
CCDC88A-212ENST00000474059 CABP7Q86V35 215 aa6.19□□□□□ -1.42
CCDC88A-212ENST00000474059 LOXL4Q96JB6 756 aa6.19□□□□□ -1.42
CCDC88A-212ENST00000474059 NUDT5Q9UKK9 219 aa6.19□□□□□ -1.42
CCDC88A-212ENST00000474059 SUV39H1O43463 412 aa6.18□□□□□ -1.42
CCDC88A-212ENST00000474059 SLPIP03973 132 aa6.18□□□□□ -1.42
CCDC88A-212ENST00000474059 FUCA1P04066 466 aa6.18□□□□□ -1.42
CCDC88A-212ENST00000474059 ITGA1P56199 1179 aa6.18□□□□□ -1.42
CCDC88A-212ENST00000474059 GRB10Q13322 594 aa6.18□□□□□ -1.42
CCDC88A-212ENST00000474059 GNPTABQ3T906 1256 aa6.18□□□□□ -1.42
CCDC88A-212ENST00000474059 FAM26FQ5R3K3 315 aa6.18□□□□□ -1.42
CCDC88A-212ENST00000474059 FBXW10Q5XX13 1052 aa6.18□□□□□ -1.42
CCDC88A-212ENST00000474059 LIMS2Q7Z4I7 341 aa6.18□□□□□ -1.42
CCDC88A-212ENST00000474059 SPRED1Q7Z699 444 aa6.18□□□□□ -1.42
CCDC88A-212ENST00000474059 KYQ8NBH2 561 aa6.18□□□□□ -1.42
CCDC88A-212ENST00000474059 COPS5Q92905 334 aa6.18□□□□□ -1.42
CCDC88A-212ENST00000474059 MBD6Q96DN6 1003 aa6.18□□□□□ -1.42
CCDC88A-212ENST00000474059 RCC1LQ96I51 464 aaKnown RBP6.18□□□□□ -1.42
CCDC88A-212ENST00000474059 BACH2Q9BYV9 841 aa6.18□□□□□ -1.42
CCDC88A-212ENST00000474059 GINM1Q9NU53 330 aa6.18□□□□□ -1.42
CCDC88A-212ENST00000474059 APEX2Q9UBZ4 518 aa6.18□□□□□ -1.42
CCDC88A-212ENST00000474059 ST6GALNAC2Q9UJ37 374 aa6.18□□□□□ -1.42
CCDC88A-212ENST00000474059 NPHP3-ACAD11A0A0J9YXS1 232 aa6.17□□□□□ -1.42
CCDC88A-212ENST00000474059 ARNTLO00327 626 aa6.17□□□□□ -1.42
CCDC88A-212ENST00000474059 FSHBP01225 129 aa6.17□□□□□ -1.42
CCDC88A-212ENST00000474059 PAMP19021 973 aa6.17□□□□□ -1.42
CCDC88A-212ENST00000474059 SEPHS1P49903 392 aa6.17□□□□□ -1.42
CCDC88A-212ENST00000474059 INF2Q27J81 1249 aa6.17□□□□□ -1.42
CCDC88A-212ENST00000474059 TXNDC5Q8NBS9 432 aaKnown RBP6.17□□□□□ -1.42
CCDC88A-212ENST00000474059 RGS22Q8NE09 1264 aa6.17□□□□□ -1.42
CCDC88A-212ENST00000474059 CLEC1BQ9P126 229 aa6.17□□□□□ -1.42
CCDC88A-212ENST00000474059 PPP4R1LQ9P1A2 415 aa6.17□□□□□ -1.42
CCDC88A-212ENST00000474059 SMARCA5O60264 1052 aaPredicted RBP6.16□□□□□ -1.42
CCDC88A-212ENST00000474059 B4GALT3O60512 393 aa6.16□□□□□ -1.42
CCDC88A-212ENST00000474059 SOX9P48436 509 aa6.16□□□□□ -1.42
CCDC88A-212ENST00000474059 GIPRP48546 466 aa6.16□□□□□ -1.42
CCDC88A-212ENST00000474059 AMPD2Q01433 879 aa6.16□□□□□ -1.42
CCDC88A-212ENST00000474059 ADAM9Q13443 819 aa6.16□□□□□ -1.42
CCDC88A-212ENST00000474059 ICAM4Q14773 271 aa6.16□□□□□ -1.42
CCDC88A-212ENST00000474059 ZNF326Q5BKZ1 582 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-212ENST00000474059 HEATR6Q6AI08 1181 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-212ENST00000474059 MCTP2Q6DN12 878 aa6.16□□□□□ -1.42
CCDC88A-212ENST00000474059 ETV3LQ6ZN32 361 aa6.16□□□□□ -1.42
CCDC88A-212ENST00000474059 C19orf47Q8N9M1 422 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-212ENST00000474059 SORCS2Q96PQ0 1159 aa6.16□□□□□ -1.42
CCDC88A-212ENST00000474059 GZF1Q9H116 711 aaPredicted RBP6.16□□□□□ -1.42
CCDC88A-212ENST00000474059 PHAXQ9H814 394 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-212ENST00000474059 CD248Q9HCU0 757 aa6.16□□□□□ -1.42
CCDC88A-212ENST00000474059 DDX41Q9UJV9 622 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-212ENST00000474059 MROH6A6NGR9 719 aa6.15□□□□□ -1.42
CCDC88A-212ENST00000474059 C6P13671 934 aa6.15□□□□□ -1.42
CCDC88A-212ENST00000474059 PLS3P13797 630 aa6.15□□□□□ -1.42
CCDC88A-212ENST00000474059 ZNF28P17035 718 aa6.15□□□□□ -1.42
CCDC88A-212ENST00000474059 CR1LQ2VPA4 569 aa6.15□□□□□ -1.42
CCDC88A-212ENST00000474059 CRIP3Q6Q6R5 217 aa6.15□□□□□ -1.42
CCDC88A-212ENST00000474059 LGI4Q8N135 537 aa6.15□□□□□ -1.42
CCDC88A-212ENST00000474059 DVL3Q92997 716 aaPredicted RBP6.15□□□□□ -1.42
CCDC88A-212ENST00000474059 RNF34Q969K3 372 aa6.15□□□□□ -1.42
CCDC88A-212ENST00000474059 MMP19Q99542 508 aa6.15□□□□□ -1.42
CCDC88A-212ENST00000474059 GBP3Q9H0R5 595 aa6.15□□□□□ -1.42
CCDC88A-212ENST00000474059 GPRC5CQ9NQ84 441 aa6.15□□□□□ -1.42
CCDC88A-212ENST00000474059 DDX3XO00571 662 aaKnown RBP eCLIP6.14□□□□□ -1.43
CCDC88A-212ENST00000474059 NPHS1O60500 1241 aa6.14□□□□□ -1.43
CCDC88A-212ENST00000474059 PDIA4P13667 645 aaKnown RBP6.14□□□□□ -1.43
CCDC88A-212ENST00000474059 ZNF16P17020 682 aaPredicted RBP6.14□□□□□ -1.43
CCDC88A-212ENST00000474059 ACVRL1P37023 503 aa6.14□□□□□ -1.43
CCDC88A-212ENST00000474059 SLC7A5Q01650 507 aa6.14□□□□□ -1.43
CCDC88A-212ENST00000474059 NLRP10Q86W26 655 aa6.14□□□□□ -1.43
CCDC88A-212ENST00000474059 DCP2Q8IU60 420 aaKnown RBP6.14□□□□□ -1.43
CCDC88A-212ENST00000474059 TEX2Q8IWB9 1127 aa6.14□□□□□ -1.43
CCDC88A-212ENST00000474059 LGR4Q9BXB1 951 aa6.14□□□□□ -1.43
CCDC88A-212ENST00000474059 MARCH2Q9P0N8 246 aa6.14□□□□□ -1.43
CCDC88A-212ENST00000474059 GPR42O15529 346 aa6.13□□□□□ -1.43
CCDC88A-212ENST00000474059 PPM1BO75688 479 aa6.13□□□□□ -1.43
CCDC88A-212ENST00000474059 THBDP07204 575 aa6.13□□□□□ -1.43
CCDC88A-212ENST00000474059 TACR2P21452 398 aa6.13□□□□□ -1.43
CCDC88A-212ENST00000474059 STAT5AP42229 794 aa6.13□□□□□ -1.43
CCDC88A-212ENST00000474059 KRTAP1-1Q07627 177 aa6.13□□□□□ -1.43
CCDC88A-212ENST00000474059 SCRN1Q12765 414 aa6.13□□□□□ -1.43
CCDC88A-212ENST00000474059 CD300LDQ6UXZ3 194 aa6.13□□□□□ -1.43
CCDC88A-212ENST00000474059 ADAT2Q7Z6V5 191 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-212ENST00000474059 FAM126BQ8IXS8 530 aa6.13□□□□□ -1.43
CCDC88A-212ENST00000474059 Q8N1Y9 231 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms