RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 BZW2Q9Y6E2 419 aaKnown RBP6.77□□□□□ -1.33
HERC4-209ENST00000473533 TRIM49BA6NDI0 452 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 ADAMTS2O95450 1211 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 SERPING1P05155 500 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 LDHCP07864 332 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 NAP1L1P55209 391 aaKnown RBP6.77□□□□□ -1.33
HERC4-209ENST00000473533 PPP4R3AQ6IN85 833 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 NEK8Q86SG6 692 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 PACS2Q86VP3 889 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 PNMA1Q8ND90 353 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 CABS1Q96KC9 395 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 CEP63Q96MT8 703 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 SPZ1Q9BXG8 430 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 TRIM10Q9UDY6 481 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 ITGB4P16144 1822 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 ESYT2A0FGR8 921 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 TMCO5BA8MYB1 307 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 RBAK-RBAKDNI3L0D1 243 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 RNF225M0QZC1 329 aaPredicted RBP6.77□□□□□ -1.33
HERC4-209ENST00000473533 FSBPO95073 299 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 BAG3O95817 575 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 BIRC3Q13489 604 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 SFMBT2Q5VUG0 894 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 CLEC4GQ6UXB4 293 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 ZNF444Q8N0Y2 327 aaPredicted RBP6.77□□□□□ -1.33
HERC4-209ENST00000473533 CNPY4Q8N129 248 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 SYNE4Q8N205 404 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 PBKQ96KB5 322 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 EPN3Q9H201 632 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 A1CFQ9NQ94 594 aaKnown RBP6.77□□□□□ -1.33
HERC4-209ENST00000473533 GDF3Q9NR23 364 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 MAPK8IP1Q9UQF2 711 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 STK24Q9Y6E0 443 aa6.77□□□□□ -1.33
HERC4-209ENST00000473533 BTNL10A8MVZ5 291 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 AGPSO00116 658 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 MEFVO15553 781 aaPredicted RBP6.76□□□□□ -1.33
HERC4-209ENST00000473533 SRGAP2O75044 1071 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 PLCG1P19174 1290 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 EIF4A3P38919 411 aaKnown RBP6.76□□□□□ -1.33
HERC4-209ENST00000473533 TDRD12Q587J7 1177 aaKnown RBP6.76□□□□□ -1.33
HERC4-209ENST00000473533 NAALADL2Q58DX5 795 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 SUSD4Q5VX71 490 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 TYW1BQ6NUM6 668 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 PDXDC1Q6P996 788 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 VPS36Q86VN1 386 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 FBXO41Q8TF61 875 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 RRP36Q96EU6 259 aaKnown RBP6.76□□□□□ -1.33
HERC4-209ENST00000473533 LACRTQ9GZZ8 138 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 MMRN2Q9H8L6 949 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 DCP1AQ9NPI6 582 aaPredicted RBP6.76□□□□□ -1.33
HERC4-209ENST00000473533 AGPAT5Q9NUQ2 364 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 PCDHA6Q9UN73 950 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 PCDHA8Q9Y5H6 950 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 ROBO3Q96MS0 1386 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 EXOC5O00471 708 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 MNAT1P51948 309 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 SF3B3Q15393 1217 aaKnown RBP6.76□□□□□ -1.33
HERC4-209ENST00000473533 IL17AQ16552 155 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 SPDYCQ5MJ68 293 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 ANKRD40Q6AI12 368 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 PPP4R3CPQ6ZMV5 832 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 HEATR3Q7Z4Q2 680 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 CALR3Q96L12 384 aaKnown RBP6.76□□□□□ -1.33
HERC4-209ENST00000473533 LRRC1Q9BTT6 524 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 ZMYND12Q9H0C1 365 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 MKNK2Q9HBH9 465 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 SWAP70Q9UH65 585 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 KDM3AQ9Y4C1 1321 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 ABCA3Q99758 1704 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 A0A1B0GUL6 1792 aa6.76□□□□□ -1.33
HERC4-209ENST00000473533 CCDC188H7C350 402 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 EPS15P42566 896 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 HSPA2P54652 639 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 NAPAP54920 295 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 IFFO1Q0D2I5 559 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 PDIA5Q14554 519 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 MIIPQ5JXC2 388 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 KRT79Q5XKE5 535 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 HAUS3Q68CZ6 603 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 SHISA4Q96DD7 197 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 GLT8D2Q9H1C3 349 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 SIK3Q9Y2K2 1263 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 CICQ96RK0 1608 aaPredicted RBP6.75□□□□□ -1.33
HERC4-209ENST00000473533 CACNA1SQ13698 1873 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 hCG_1642624A0A1W2PR95 340 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 M0R2N6 131 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 MOCS3O95396 460 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 ABL1P00519 1130 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 TSPY3P0CV98 308 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 TSPY8P0CW00 308 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 NR1D1P20393 614 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 FXR2P51116 673 aaKnown RBP eCLIP6.75□□□□□ -1.33
HERC4-209ENST00000473533 FKBP3Q00688 224 aaKnown RBP6.75□□□□□ -1.33
HERC4-209ENST00000473533 DDR1Q08345 913 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 INF2Q27J81 1249 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 CCDC40Q4G0X9 1142 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 PPP1R18Q6NYC8 613 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 BRINP3Q76B58 766 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 RRAGAQ7L523 313 aa6.75□□□□□ -1.33
HERC4-209ENST00000473533 DZIP1Q86YF9 867 aaKnown RBP6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms