RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 PRPF18Q99633 342 aaKnown RBP9.74□□□□□ -0.85
COL6A3-210ENST00000473258 GORASP1Q9BQQ3 440 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 NAPBQ9H115 298 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 SYTL2Q9HCH5 934 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 ECHDC1Q9NTX5 307 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 POGZQ7Z3K3 1410 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 KPNA4O00629 521 aaPredicted RBP9.74□□□□□ -0.85
COL6A3-210ENST00000473258 TUFMP49411 452 aaKnown RBP9.74□□□□□ -0.85
COL6A3-210ENST00000473258 PPP2R2AP63151 447 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 PAK1Q13153 545 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 RASA3Q14644 834 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 KRT72Q14CN4 511 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 CCT8L2Q96SF2 557 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 TRPV6Q9H1D0 765 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 PASKQ96RG2 1323 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 NFIBO00712 420 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 MAFGO15525 162 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 CCT3P49368 545 aaKnown RBP9.74□□□□□ -0.85
COL6A3-210ENST00000473258 POLR2FP61218 127 aaKnown RBP9.74□□□□□ -0.85
COL6A3-210ENST00000473258 CCDC153Q494R4 210 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 ATP8B4Q8TF62 1192 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 PHACTR3Q96KR7 559 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 NACA2Q9H009 215 aa9.74□□□□□ -0.85
COL6A3-210ENST00000473258 RNF41Q9H4P4 317 aaPredicted RBP9.74□□□□□ -0.85
COL6A3-210ENST00000473258 ANKRD30BQ9BXX2 1392 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 ENC1O14682 589 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 AXIN1O15169 862 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 ZNF202O95125 648 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 TNNC2P02585 160 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 RPS6KA3P51812 740 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 ATN1P54259 1190 aaPredicted RBP9.73□□□□□ -0.85
COL6A3-210ENST00000473258 FAPQ12884 760 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 PPP2R5CQ13362 524 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 TYW1BQ6NUM6 668 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 CATIPQ7Z7H3 387 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 PEX5LQ8IYB4 626 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 SLC26A7Q8TE54 656 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 ZKSCAN3Q9BRR0 538 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 TRIM15Q9C019 465 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 KCNH3Q9ULD8 1083 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 GRIN1Q05586 938 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 KIF22Q14807 665 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 PPP4R4Q6NUP7 873 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 PLD3Q8IV08 490 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 CROCCP3Q8IVE0 287 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 CSGALNACT2Q8N6G5 542 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 C3orf20Q8ND61 904 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 PDLIM2Q96JY6 352 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 PLAAQ9Y263 795 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 NOP56O00567 594 aaKnown RBP9.73□□□□□ -0.85
COL6A3-210ENST00000473258 RGS20O76081 388 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 MYBL2P10244 700 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 HLA-DPA1P20036 260 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 IQCB1Q15051 598 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 ADCK5Q3MIX3 580 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 TMEM67Q5HYA8 995 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 NCAPG2Q86XI2 1143 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 OR9Q1Q8NGQ5 310 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 NCOA7Q8NI08 942 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 MPP6Q9NZW5 540 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 GPRASP1Q5JY77 1395 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 POC1B-GALNT4F8VUJ3 575 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 LZTS3O60299 673 aaPredicted RBP9.73□□□□□ -0.85
COL6A3-210ENST00000473258 ATP8B2P98198 1209 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 SCRN3Q0VDG4 424 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 RASGRF1Q13972 1273 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 PPP4R3AQ6IN85 833 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 DTX3LQ8TDB6 740 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 SMCR8Q8TEV9 937 aaPredicted RBP9.73□□□□□ -0.85
COL6A3-210ENST00000473258 NMD3Q96D46 503 aaKnown RBP9.73□□□□□ -0.85
COL6A3-210ENST00000473258 AP4S1Q9Y587 144 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 RBM8AQ9Y5S9 174 aaKnown RBP9.73□□□□□ -0.85
COL6A3-210ENST00000473258 IDH1O75874 414 aaKnown RBP9.73□□□□□ -0.85
COL6A3-210ENST00000473258 IL12RB1P42701 662 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 TAS2R42Q7RTR8 314 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 PODNQ7Z5L7 613 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 AFAP1Q8N556 730 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 GRAMD1AQ96CP6 724 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 CHAMP1Q96JM3 812 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 KAT14Q9H8E8 782 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 CNNM1Q9NRU3 951 aa9.73□□□□□ -0.85
COL6A3-210ENST00000473258 PPARGC1AQ9UBK2 798 aaKnown RBP9.73□□□□□ -0.85
COL6A3-210ENST00000473258 OATP04181 439 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 NUP107P57740 925 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 PUDPQ08623 228 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 ADCY1Q08828 1119 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 TSC22D1Q15714 1073 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 TAF12Q16514 161 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 DENND6AQ8IWF6 608 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 CAPSLQ8WWF8 208 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 CCDC134Q9H6E4 229 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 SMYD3Q9H7B4 428 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 PKD2L2Q9NZM6 624 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 SLCO1A2P46721 670 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 VCPP55072 806 aaKnown RBP9.72□□□□□ -0.85
COL6A3-210ENST00000473258 CBX3Q13185 183 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 C16orf72Q14CZ0 275 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 C2CD5Q86YS7 1000 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 LRRC39Q96DD0 335 aa9.72□□□□□ -0.85
COL6A3-210ENST00000473258 DEPDC7Q96QD5 511 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms