RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 SYTL5Q8TDW5 730 aaPredicted RBP6.11□□□□□ -1.43
VPS13A-210ENST00000471439 GPRASP2Q96D09 838 aa6.11□□□□□ -1.43
VPS13A-210ENST00000471439 DIRC2Q96SL1 478 aa6.11□□□□□ -1.43
VPS13A-210ENST00000471439 EFR3BQ9Y2G0 817 aa6.11□□□□□ -1.43
VPS13A-210ENST00000471439 ARID1BQ8NFD5 2236 aaPredicted RBP6.11□□□□□ -1.43
VPS13A-210ENST00000471439 PTPRUQ92729 1446 aa6.1□□□□□ -1.43
VPS13A-210ENST00000471439 SIGLEC6O43699 453 aa6.1□□□□□ -1.43
VPS13A-210ENST00000471439 RPL10P27635 214 aaKnown RBP6.1□□□□□ -1.43
VPS13A-210ENST00000471439 CTSKP43235 329 aa6.1□□□□□ -1.43
VPS13A-210ENST00000471439 LRRFIP1Q32MZ4 808 aaKnown RBP6.1□□□□□ -1.43
VPS13A-210ENST00000471439 DCAF15Q66K64 600 aa6.1□□□□□ -1.43
VPS13A-210ENST00000471439 CRTC3Q6UUV7 619 aa6.1□□□□□ -1.43
VPS13A-210ENST00000471439 C16orf71Q8IYS4 520 aaPredicted RBP6.1□□□□□ -1.43
VPS13A-210ENST00000471439 MYLIPQ8WY64 445 aa6.1□□□□□ -1.43
VPS13A-210ENST00000471439 STK32BQ9NY57 414 aa6.1□□□□□ -1.43
VPS13A-210ENST00000471439 SUCOQ9UBS9 1254 aaKnown RBP6.1□□□□□ -1.43
VPS13A-210ENST00000471439 TCFL5Q9UL49 500 aa6.1□□□□□ -1.43
VPS13A-210ENST00000471439 COL6A3P12111 3177 aa6.1□□□□□ -1.43
VPS13A-210ENST00000471439 PXDNQ92626 1479 aa6.09□□□□□ -1.43
VPS13A-210ENST00000471439 ABCA3Q99758 1704 aa6.09□□□□□ -1.43
VPS13A-210ENST00000471439 NOTOA8MTQ0 251 aa6.09□□□□□ -1.43
VPS13A-210ENST00000471439 PLSCR1O15162 318 aa6.09□□□□□ -1.43
VPS13A-210ENST00000471439 SYPP08247 313 aa6.09□□□□□ -1.43
VPS13A-210ENST00000471439 DNAJA1P31689 397 aaKnown RBP6.09□□□□□ -1.43
VPS13A-210ENST00000471439 CCNFP41002 786 aa6.09□□□□□ -1.43
VPS13A-210ENST00000471439 IDI1Q13907 227 aa6.09□□□□□ -1.43
VPS13A-210ENST00000471439 WAPLQ7Z5K2 1190 aa6.09□□□□□ -1.43
VPS13A-210ENST00000471439 DAGLBQ8NCG7 672 aa6.09□□□□□ -1.43
VPS13A-210ENST00000471439 PDZD8Q8NEN9 1154 aa6.09□□□□□ -1.43
VPS13A-210ENST00000471439 GCC1Q96CN9 775 aa6.09□□□□□ -1.43
VPS13A-210ENST00000471439 ASCC2Q9H1I8 757 aaPredicted RBP6.09□□□□□ -1.43
VPS13A-210ENST00000471439 NSUN3Q9H649 340 aaKnown RBP6.09□□□□□ -1.43
VPS13A-210ENST00000471439 CHST7Q9NS84 486 aa6.09□□□□□ -1.43
VPS13A-210ENST00000471439 ZNF281Q9Y2X9 895 aa6.09□□□□□ -1.43
VPS13A-210ENST00000471439 KIAA1107Q9UPP5 1409 aa6.08□□□□□ -1.44
VPS13A-210ENST00000471439 SPATA31A5Q5VU36 1347 aa6.08□□□□□ -1.44
VPS13A-210ENST00000471439 SPATA31A7Q8IWB4 1347 aa6.08□□□□□ -1.44
VPS13A-210ENST00000471439 LTBP3Q9NS15 1303 aa6.08□□□□□ -1.44
VPS13A-210ENST00000471439 TP53P04637 393 aaPredicted RBP6.08□□□□□ -1.44
VPS13A-210ENST00000471439 RAC2P15153 192 aa6.08□□□□□ -1.44
VPS13A-210ENST00000471439 FXR1P51114 621 aaKnown RBP eCLIP6.08□□□□□ -1.44
VPS13A-210ENST00000471439 AUHQ13825 339 aaKnown RBP6.08□□□□□ -1.44
VPS13A-210ENST00000471439 KIR3DS1Q14943 382 aa6.08□□□□□ -1.44
VPS13A-210ENST00000471439 AXDND1Q5T1B0 1012 aaPredicted RBP6.08□□□□□ -1.44
VPS13A-210ENST00000471439 UNC5AQ6ZN44 842 aa6.08□□□□□ -1.44
VPS13A-210ENST00000471439 RASGRP4Q8TDF6 673 aa6.08□□□□□ -1.44
VPS13A-210ENST00000471439 LINC01599Q8WXQ3 324 aa6.08□□□□□ -1.44
VPS13A-210ENST00000471439 FBXL21Q9UKT6 434 aa6.08□□□□□ -1.44
VPS13A-210ENST00000471439 PCDHB12Q9Y5F1 795 aa6.08□□□□□ -1.44
VPS13A-210ENST00000471439 COL24A1Q17RW2 1714 aa6.08□□□□□ -1.44
VPS13A-210ENST00000471439 ADAMTS13Q76LX8 1427 aa6.08□□□□□ -1.44
VPS13A-210ENST00000471439 PRAG1Q86YV5 1406 aa6.08□□□□□ -1.44
VPS13A-210ENST00000471439 PIK3R4Q99570 1358 aa6.07□□□□□ -1.44
VPS13A-210ENST00000471439 MYO5BQ9ULV0 1848 aa6.07□□□□□ -1.44
VPS13A-210ENST00000471439 PSPNO60542 156 aa6.07□□□□□ -1.44
VPS13A-210ENST00000471439 FARP2O94887 1054 aaPredicted RBP6.07□□□□□ -1.44
VPS13A-210ENST00000471439 FGRP09769 529 aa6.07□□□□□ -1.44
VPS13A-210ENST00000471439 ATF4P18848 351 aaPredicted RBP6.07□□□□□ -1.44
VPS13A-210ENST00000471439 GUCY2CP25092 1073 aa6.07□□□□□ -1.44
VPS13A-210ENST00000471439 SOX9P48436 509 aa6.07□□□□□ -1.44
VPS13A-210ENST00000471439 RNF111Q6ZNA4 994 aa6.07□□□□□ -1.44
VPS13A-210ENST00000471439 MCF2L2Q86YR7 1114 aa6.07□□□□□ -1.44
VPS13A-210ENST00000471439 SIRT2Q8IXJ6 389 aa6.07□□□□□ -1.44
VPS13A-210ENST00000471439 CCDC144CPQ8IYA2 1237 aa6.07□□□□□ -1.44
VPS13A-210ENST00000471439 ZNF655Q8N720 491 aaPredicted RBP6.07□□□□□ -1.44
VPS13A-210ENST00000471439 SLC43A3Q8NBI5 491 aa6.07□□□□□ -1.44
VPS13A-210ENST00000471439 SREK1Q8WXA9 508 aaKnown RBP6.07□□□□□ -1.44
VPS13A-210ENST00000471439 CCDC120Q96HB5 630 aa6.07□□□□□ -1.44
VPS13A-210ENST00000471439 TM9SF2Q99805 663 aa6.07□□□□□ -1.44
VPS13A-210ENST00000471439 GPR160Q9UJ42 338 aa6.07□□□□□ -1.44
VPS13A-210ENST00000471439 ADGRL2O95490 1459 aa6.07□□□□□ -1.44
VPS13A-210ENST00000471439 SBF2Q86WG5 1849 aa6.06□□□□□ -1.44
VPS13A-210ENST00000471439 EHBP1L1Q8N3D4 1523 aa6.06□□□□□ -1.44
VPS13A-210ENST00000471439 HSPA8P11142 646 aaKnown RBP6.06□□□□□ -1.44
VPS13A-210ENST00000471439 IMPDH2P12268 514 aa6.06□□□□□ -1.44
VPS13A-210ENST00000471439 NASPP49321 788 aaPredicted RBP6.06□□□□□ -1.44
VPS13A-210ENST00000471439 PMS1P54277 932 aaKnown RBP6.06□□□□□ -1.44
VPS13A-210ENST00000471439 PCBP3P57721 371 aaKnown RBP6.06□□□□□ -1.44
VPS13A-210ENST00000471439 JAG1P78504 1218 aa6.06□□□□□ -1.44
VPS13A-210ENST00000471439 C7orf61Q8IZ16 206 aa6.06□□□□□ -1.44
VPS13A-210ENST00000471439 TAB3Q8N5C8 712 aaPredicted RBP6.06□□□□□ -1.44
VPS13A-210ENST00000471439 RBBP8NLQ8NC74 664 aaPredicted RBP6.06□□□□□ -1.44
VPS13A-210ENST00000471439 ENOX1Q8TC92 643 aaKnown RBP6.06□□□□□ -1.44
VPS13A-210ENST00000471439 BRF1Q92994 677 aa6.06□□□□□ -1.44
VPS13A-210ENST00000471439 SHISA4Q96DD7 197 aa6.06□□□□□ -1.44
VPS13A-210ENST00000471439 HHIPL1Q96JK4 782 aa6.06□□□□□ -1.44
VPS13A-210ENST00000471439 ZMYM5Q9UJ78 669 aa6.06□□□□□ -1.44
VPS13A-210ENST00000471439 PCDHB10Q9UN67 800 aa6.06□□□□□ -1.44
VPS13A-210ENST00000471439 ZFYVE9O95405 1425 aa6.06□□□□□ -1.44
VPS13A-210ENST00000471439 XRN1Q8IZH2 1706 aaKnown RBP6.05□□□□□ -1.44
VPS13A-210ENST00000471439 LRRIQ1Q96JM4 1722 aa6.05□□□□□ -1.44
VPS13A-210ENST00000471439 NPHP3Q7Z494 1330 aa6.05□□□□□ -1.44
VPS13A-210ENST00000471439 PRXQ9BXM0 1461 aa6.05□□□□□ -1.44
VPS13A-210ENST00000471439 KRTAP4-8A0A0G2JLE6 195 aa6.05□□□□□ -1.44
VPS13A-210ENST00000471439 FITM1A5D6W6 292 aa6.05□□□□□ -1.44
VPS13A-210ENST00000471439 H0Y8X5 98 aa6.05□□□□□ -1.44
VPS13A-210ENST00000471439 KRT1P04264 644 aa6.05□□□□□ -1.44
VPS13A-210ENST00000471439 ARID5AQ03989 594 aa6.05□□□□□ -1.44
VPS13A-210ENST00000471439 GNL2Q13823 731 aaKnown RBP6.05□□□□□ -1.44
VPS13A-210ENST00000471439 INTS3Q68E01 1043 aaKnown RBP6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms