RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 TDP2O95551 362 aa11.32□□□□□ -0.6
SF3A1-207ENST00000471342 SNAI1O95863 264 aaPredicted RBP11.32□□□□□ -0.6
SF3A1-207ENST00000471342 ALDH1A1P00352 501 aa11.32□□□□□ -0.6
SF3A1-207ENST00000471342 CFBP00751 764 aa11.32□□□□□ -0.6
SF3A1-207ENST00000471342 POLR2MP0CAP2 368 aa11.32□□□□□ -0.6
SF3A1-207ENST00000471342 GNA11P29992 359 aa11.32□□□□□ -0.6
SF3A1-207ENST00000471342 NASPP49321 788 aaPredicted RBP11.32□□□□□ -0.6
SF3A1-207ENST00000471342 MRPL12P52815 198 aaKnown RBP11.32□□□□□ -0.6
SF3A1-207ENST00000471342 NUCB2P80303 420 aa11.32□□□□□ -0.6
SF3A1-207ENST00000471342 LACTBP83111 547 aaPredicted RBP11.32□□□□□ -0.6
SF3A1-207ENST00000471342 AP3B2Q13367 1082 aa11.32□□□□□ -0.6
SF3A1-207ENST00000471342 PLS1Q14651 629 aa11.32□□□□□ -0.6
SF3A1-207ENST00000471342 PGM5Q15124 567 aa11.32□□□□□ -0.6
SF3A1-207ENST00000471342 INF2Q27J81 1249 aa11.32□□□□□ -0.6
SF3A1-207ENST00000471342 AXDND1Q5T1B0 1012 aaPredicted RBP11.32□□□□□ -0.6
SF3A1-207ENST00000471342 PPP4R3CPQ6ZMV5 832 aa11.32□□□□□ -0.6
SF3A1-207ENST00000471342 RNF207Q6ZRF8 634 aa11.32□□□□□ -0.6
SF3A1-207ENST00000471342 VSIG10LQ86VR7 867 aa11.32□□□□□ -0.6
SF3A1-207ENST00000471342 NCAPG2Q86XI2 1143 aa11.32□□□□□ -0.6
SF3A1-207ENST00000471342 REXO1Q8N1G1 1221 aaKnown RBP11.32□□□□□ -0.6
SF3A1-207ENST00000471342 LINC00301Q8NCQ3 95 aa11.32□□□□□ -0.6
SF3A1-207ENST00000471342 CUL5Q93034 780 aa11.32□□□□□ -0.6
SF3A1-207ENST00000471342 SAGE1Q9NXZ1 904 aa11.32□□□□□ -0.6
SF3A1-207ENST00000471342 TFIP11Q9UBB9 837 aaKnown RBP11.32□□□□□ -0.6
SF3A1-207ENST00000471342 PNMA2Q9UL42 364 aa11.32□□□□□ -0.6
SF3A1-207ENST00000471342 GABRQQ9UN88 632 aa11.32□□□□□ -0.6
SF3A1-207ENST00000471342 UBIAD1Q9Y5Z9 338 aa11.32□□□□□ -0.6
SF3A1-207ENST00000471342 ZNF236Q9UL36 1845 aa11.31□□□□□ -0.6
SF3A1-207ENST00000471342 MEIS1O00470 390 aa11.31□□□□□ -0.6
SF3A1-207ENST00000471342 DHX15O43143 795 aaKnown RBP11.31□□□□□ -0.6
SF3A1-207ENST00000471342 BAG4O95429 457 aaKnown RBP11.31□□□□□ -0.6
SF3A1-207ENST00000471342 PTGS1P23219 599 aa11.31□□□□□ -0.6
SF3A1-207ENST00000471342 ADORA2AP29274 412 aa11.31□□□□□ -0.6
SF3A1-207ENST00000471342 ARHGAP4P98171 946 aa11.31□□□□□ -0.6
SF3A1-207ENST00000471342 SPIRE1Q08AE8 756 aa11.31□□□□□ -0.6
SF3A1-207ENST00000471342 NSMFQ6X4W1 530 aa11.31□□□□□ -0.6
SF3A1-207ENST00000471342 PAXIP1Q6ZW49 1069 aaPredicted RBP11.31□□□□□ -0.6
SF3A1-207ENST00000471342 BRAPQ7Z569 592 aa11.31□□□□□ -0.6
SF3A1-207ENST00000471342 PLEKHH3Q7Z736 793 aa11.31□□□□□ -0.6
SF3A1-207ENST00000471342 ETNPPLQ8TBG4 499 aa11.31□□□□□ -0.6
SF3A1-207ENST00000471342 SMCR8Q8TEV9 937 aaPredicted RBP11.31□□□□□ -0.6
SF3A1-207ENST00000471342 GJA10Q969M2 543 aa11.31□□□□□ -0.6
SF3A1-207ENST00000471342 ZSCAN16Q9H4T2 348 aaPredicted RBP11.31□□□□□ -0.6
SF3A1-207ENST00000471342 KCNMB3Q9NPA1 279 aa11.31□□□□□ -0.6
SF3A1-207ENST00000471342 RTEL1Q9NZ71 1219 aa11.31□□□□□ -0.6
SF3A1-207ENST00000471342 FBXO40Q9UH90 709 aa11.31□□□□□ -0.6
SF3A1-207ENST00000471342 RCOR1Q9UKL0 485 aa11.31□□□□□ -0.6
SF3A1-207ENST00000471342 SLC15A5A6NIM6 579 aa11.3□□□□□ -0.6
SF3A1-207ENST00000471342 ADCY6O43306 1168 aa11.3□□□□□ -0.6
SF3A1-207ENST00000471342 HSP90AA1P07900 732 aaKnown RBP11.3□□□□□ -0.6
SF3A1-207ENST00000471342 PDIA4P13667 645 aaKnown RBP11.3□□□□□ -0.6
SF3A1-207ENST00000471342 ALDH5A1P51649 535 aaPredicted RBP11.3□□□□□ -0.6
SF3A1-207ENST00000471342 USP11P51784 963 aa11.3□□□□□ -0.6
SF3A1-207ENST00000471342 UBXN2AP68543 259 aa11.3□□□□□ -0.6
SF3A1-207ENST00000471342 CCL14Q16627 93 aa11.3□□□□□ -0.6
SF3A1-207ENST00000471342 PPP4R3AQ6IN85 833 aa11.3□□□□□ -0.6
SF3A1-207ENST00000471342 TAPT1Q6NXT6 567 aa11.3□□□□□ -0.6
SF3A1-207ENST00000471342 MOXD1Q6UVY6 613 aa11.3□□□□□ -0.6
SF3A1-207ENST00000471342 KRT25Q7Z3Z0 450 aa11.3□□□□□ -0.6
SF3A1-207ENST00000471342 FCHSD1Q86WN1 690 aa11.3□□□□□ -0.6
SF3A1-207ENST00000471342 MCF2L2Q86YR7 1114 aa11.3□□□□□ -0.6
SF3A1-207ENST00000471342 TMEM87AQ8NBN3 555 aa11.3□□□□□ -0.6
SF3A1-207ENST00000471342 LRRC15Q8TF66 581 aa11.3□□□□□ -0.6
SF3A1-207ENST00000471342 CCDC12Q8WUD4 166 aaPredicted RBP11.3□□□□□ -0.6
SF3A1-207ENST00000471342 ZNF296Q8WUU4 475 aaPredicted RBP11.3□□□□□ -0.6
SF3A1-207ENST00000471342 INPP4AQ96PE3 977 aaPredicted RBP11.3□□□□□ -0.6
SF3A1-207ENST00000471342 TSKSQ9UJT2 592 aa11.3□□□□□ -0.6
SF3A1-207ENST00000471342 CNPY2Q9Y2B0 182 aa11.3□□□□□ -0.6
SF3A1-207ENST00000471342 MYH6P13533 1939 aa11.3□□□□□ -0.6
SF3A1-207ENST00000471342 LRRC37A2A6NM11 1700 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 CENPFP49454 3210 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 RBM47A0AV96 593 aaKnown RBP11.29□□□□□ -0.6
SF3A1-207ENST00000471342 H3BQV1 296 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 STRNO43815 780 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 ATP9AO75110 1047 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 ARIH2O95376 493 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 FOSP01100 380 aaPredicted RBP11.29□□□□□ -0.6
SF3A1-207ENST00000471342 NR3C2P08235 984 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 ARP10275 920 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 MAPK4P31152 587 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 COPB2P35606 906 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 TRAPPC10P48553 1259 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 SP2Q02086 613 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 TRAF1Q13077 416 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 MAP2K5Q13163 448 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 NONOQ15233 471 aaKnown RBP eCLIP11.29□□□□□ -0.6
SF3A1-207ENST00000471342 SF3A1Q15459 793 aaKnown RBP11.29□□□□□ -0.6
SF3A1-207ENST00000471342 Q4G0T1 1027 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 PCNX4Q63HM2 1172 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 CCDC62Q6P9F0 684 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 ZNF467Q7Z7K2 595 aaPredicted RBP11.29□□□□□ -0.6
SF3A1-207ENST00000471342 TRPV1Q8NER1 839 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 DNERQ8NFT8 737 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 LEO1Q8WVC0 666 aaPredicted RBP11.29□□□□□ -0.6
SF3A1-207ENST00000471342 MAML3Q96JK9 1138 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 RMDN3Q96TC7 470 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 MMP19Q99542 508 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 GLT8D2Q9H1C3 349 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 GDPD2Q9HCC8 539 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 POLR3EQ9NVU0 708 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms