RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 LMO7Q8WWI1 1683 aa8.21□□□□□ -1.1
PTCD3-208ENST00000469585 OVOS2A0A0G2JMS6 1433 aa8.2□□□□□ -1.1
PTCD3-208ENST00000469585 ANKRD26Q9UPS8 1709 aa8.2□□□□□ -1.1
PTCD3-208ENST00000469585 GLI3P10071 1580 aa8.2□□□□□ -1.1
PTCD3-208ENST00000469585 PRR33A8MZF0 331 aa8.2□□□□□ -1.1
PTCD3-208ENST00000469585 OXCT1P55809 520 aa8.2□□□□□ -1.1
PTCD3-208ENST00000469585 RNF4P78317 190 aa8.2□□□□□ -1.1
PTCD3-208ENST00000469585 DDR2Q16832 855 aa8.2□□□□□ -1.1
PTCD3-208ENST00000469585 BBS9Q3SYG4 887 aa8.2□□□□□ -1.1
PTCD3-208ENST00000469585 TDRD10Q5VZ19 366 aaKnown RBP8.2□□□□□ -1.1
PTCD3-208ENST00000469585 VHLLQ6RSH7 139 aa8.2□□□□□ -1.1
PTCD3-208ENST00000469585 C6orf15Q6UXA7 325 aaPredicted RBP8.2□□□□□ -1.1
PTCD3-208ENST00000469585 PNNQ9H307 717 aaKnown RBP8.2□□□□□ -1.1
PTCD3-208ENST00000469585 MKNK2Q9HBH9 465 aa8.2□□□□□ -1.1
PTCD3-208ENST00000469585 NPC1L1Q9UHC9 1359 aa8.2□□□□□ -1.1
PTCD3-208ENST00000469585 LRRN2O75325 713 aa8.19□□□□□ -1.1
PTCD3-208ENST00000469585 KIR3DL1P43629 444 aa8.19□□□□□ -1.1
PTCD3-208ENST00000469585 SLC7A5Q01650 507 aa8.19□□□□□ -1.1
PTCD3-208ENST00000469585 FAM178BQ8IXR5 827 aa8.19□□□□□ -1.1
PTCD3-208ENST00000469585 SMARCC1Q92922 1105 aaPredicted RBP8.19□□□□□ -1.1
PTCD3-208ENST00000469585 ST7Q9NRC1 585 aa8.19□□□□□ -1.1
PTCD3-208ENST00000469585 SIRPGQ9P1W8 387 aa8.19□□□□□ -1.1
PTCD3-208ENST00000469585 PIM2Q9P1W9 311 aa8.19□□□□□ -1.1
PTCD3-208ENST00000469585 LEMD3Q9Y2U8 911 aa8.19□□□□□ -1.1
PTCD3-208ENST00000469585 MSRB2Q9Y3D2 182 aa8.19□□□□□ -1.1
PTCD3-208ENST00000469585 CAPN6Q9Y6Q1 641 aa8.19□□□□□ -1.1
PTCD3-208ENST00000469585 PCDH11XQ9BZA7 1347 aa8.19□□□□□ -1.1
PTCD3-208ENST00000469585 PCDH11YQ9BZA8 1340 aa8.19□□□□□ -1.1
PTCD3-208ENST00000469585 B2RBV5 119 aa8.18□□□□□ -1.1
PTCD3-208ENST00000469585 DIAPH1O60610 1272 aaKnown RBP8.18□□□□□ -1.1
PTCD3-208ENST00000469585 GJB6O95452 261 aa8.18□□□□□ -1.1
PTCD3-208ENST00000469585 CBX7O95931 251 aa8.18□□□□□ -1.1
PTCD3-208ENST00000469585 CHMP4BP1P59074 171 aa8.18□□□□□ -1.1
PTCD3-208ENST00000469585 DDX10Q13206 875 aaKnown RBP8.18□□□□□ -1.1
PTCD3-208ENST00000469585 NCAPHQ15003 741 aa8.18□□□□□ -1.1
PTCD3-208ENST00000469585 RALBP1Q15311 655 aa8.18□□□□□ -1.1
PTCD3-208ENST00000469585 NBPF9Q3BBW0 867 aa8.18□□□□□ -1.1
PTCD3-208ENST00000469585 GNPTABQ3T906 1256 aa8.18□□□□□ -1.1
PTCD3-208ENST00000469585 ANKRD39Q53RE8 183 aa8.18□□□□□ -1.1
PTCD3-208ENST00000469585 HSP90AB2PQ58FF8 381 aa8.18□□□□□ -1.1
PTCD3-208ENST00000469585 C1orf141Q5JVX7 400 aa8.18□□□□□ -1.1
PTCD3-208ENST00000469585 AXDND1Q5T1B0 1012 aaPredicted RBP8.18□□□□□ -1.1
PTCD3-208ENST00000469585 KIAA1211LQ6NV74 962 aa8.18□□□□□ -1.1
PTCD3-208ENST00000469585 DPH6Q7L8W6 267 aa8.18□□□□□ -1.1
PTCD3-208ENST00000469585 FAM181AQ8N9Y4 354 aa8.18□□□□□ -1.1
PTCD3-208ENST00000469585 ZCRB1Q8TBF4 217 aaKnown RBP8.18□□□□□ -1.1
PTCD3-208ENST00000469585 POLKQ9UBT6 870 aa8.18□□□□□ -1.1
PTCD3-208ENST00000469585 GNAT3A8MTJ3 354 aa8.17□□□□□ -1.1
PTCD3-208ENST00000469585 U2SURPO15042 1029 aaKnown RBP8.17□□□□□ -1.1
PTCD3-208ENST00000469585 SHOXO15266 292 aa8.17□□□□□ -1.1
PTCD3-208ENST00000469585 CYP26A1O43174 497 aa8.17□□□□□ -1.1
PTCD3-208ENST00000469585 DDAH1O94760 285 aa8.17□□□□□ -1.1
PTCD3-208ENST00000469585 TGFB1P01137 390 aa8.17□□□□□ -1.1
PTCD3-208ENST00000469585 TP53P04637 393 aaPredicted RBP8.17□□□□□ -1.1
PTCD3-208ENST00000469585 HSP90AB1P08238 724 aaKnown RBP8.17□□□□□ -1.1
PTCD3-208ENST00000469585 FOSL1P15407 271 aa8.17□□□□□ -1.1
PTCD3-208ENST00000469585 MTHFSP49914 203 aa8.17□□□□□ -1.1
PTCD3-208ENST00000469585 TNK2Q07912 1038 aa8.17□□□□□ -1.1
PTCD3-208ENST00000469585 NKPD1Q17RQ9 610 aa8.17□□□□□ -1.1
PTCD3-208ENST00000469585 PLEKHO1Q53GL0 409 aaPredicted RBP8.17□□□□□ -1.1
PTCD3-208ENST00000469585 MRM1Q6IN84 353 aaKnown RBP8.17□□□□□ -1.1
PTCD3-208ENST00000469585 MFSD4AQ8N468 514 aa8.17□□□□□ -1.1
PTCD3-208ENST00000469585 DTWD2Q8NBA8 298 aa8.17□□□□□ -1.1
PTCD3-208ENST00000469585 MKL1Q969V6 931 aa8.17□□□□□ -1.1
PTCD3-208ENST00000469585 SYTL4Q96C24 671 aaPredicted RBP8.17□□□□□ -1.1
PTCD3-208ENST00000469585 MKRN2Q9H000 416 aaKnown RBP8.17□□□□□ -1.1
PTCD3-208ENST00000469585 OSBPL2Q9H1P3 480 aa8.17□□□□□ -1.1
PTCD3-208ENST00000469585 LRRC4CQ9HCJ2 640 aa8.17□□□□□ -1.1
PTCD3-208ENST00000469585 CBFA2T2O43439 604 aa8.16□□□□□ -1.1
PTCD3-208ENST00000469585 MAP2P11137 1827 aaKnown RBP8.16□□□□□ -1.1
PTCD3-208ENST00000469585 AUHQ13825 339 aaKnown RBP8.16□□□□□ -1.1
PTCD3-208ENST00000469585 CCDC144BQ3MJ40 725 aa8.16□□□□□ -1.1
PTCD3-208ENST00000469585 AMOTQ4VCS5 1084 aa8.16□□□□□ -1.1
PTCD3-208ENST00000469585 TNS2Q63HR2 1409 aa8.16□□□□□ -1.1
PTCD3-208ENST00000469585 DCAF15Q66K64 600 aa8.16□□□□□ -1.1
PTCD3-208ENST00000469585 CCDC144CPQ8IYA2 1237 aa8.16□□□□□ -1.1
PTCD3-208ENST00000469585 PIWIL2Q8TC59 973 aaKnown RBP8.16□□□□□ -1.1
PTCD3-208ENST00000469585 RGPD5Q99666 1765 aa8.16□□□□□ -1.1
PTCD3-208ENST00000469585 FAM86C1Q9NVL1 165 aa8.16□□□□□ -1.1
PTCD3-208ENST00000469585 SUSD2Q9UGT4 822 aa8.16□□□□□ -1.1
PTCD3-208ENST00000469585 PLAGL2Q9UPG8 496 aa8.16□□□□□ -1.1
PTCD3-208ENST00000469585 COL18A1P39060 1754 aa8.15□□□□□ -1.1
PTCD3-208ENST00000469585 PARP4Q9UKK3 1724 aaKnown RBP8.15□□□□□ -1.1
PTCD3-208ENST00000469585 THSD7AQ9UPZ6 1657 aa8.15□□□□□ -1.1
PTCD3-208ENST00000469585 ANP32CO43423 234 aa8.15□□□□□ -1.1
PTCD3-208ENST00000469585 CEACAM5P06731 702 aa8.15□□□□□ -1.1
PTCD3-208ENST00000469585 FBLN1P23142 703 aa8.15□□□□□ -1.1
PTCD3-208ENST00000469585 HOXA10P31260 410 aaPredicted RBP8.15□□□□□ -1.1
PTCD3-208ENST00000469585 SNW1Q13573 536 aaKnown RBP8.15□□□□□ -1.1
PTCD3-208ENST00000469585 EIF4A2Q14240 407 aaKnown RBP8.15□□□□□ -1.1
PTCD3-208ENST00000469585 RASA3Q14644 834 aa8.15□□□□□ -1.1
PTCD3-208ENST00000469585 SPACA3Q8IXA5 215 aa8.15□□□□□ -1.1
PTCD3-208ENST00000469585 C7orf61Q8IZ16 206 aa8.15□□□□□ -1.1
PTCD3-208ENST00000469585 USHBP1Q8N6Y0 703 aa8.15□□□□□ -1.1
PTCD3-208ENST00000469585 HAUS7Q99871 368 aa8.15□□□□□ -1.1
PTCD3-208ENST00000469585 CCDC113Q9H0I3 377 aa8.15□□□□□ -1.1
PTCD3-208ENST00000469585 ZC3H7BQ9UGR2 993 aaKnown RBP8.15□□□□□ -1.1
PTCD3-208ENST00000469585 ST14Q9Y5Y6 855 aa8.15□□□□□ -1.1
PTCD3-208ENST00000469585 PARD3Q8TEW0 1356 aa8.14□□□□□ -1.11
PTCD3-208ENST00000469585 PLEKHG2Q9H7P9 1386 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms