RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 TBC1D7Q9P0N9 293 aa21.34■■□□□ 1.01
VIM-203ENST00000469543 RCCD1A6NED2 376 aa21.34■■□□□ 1.01
VIM-203ENST00000469543 EPHB6O15197 1021 aa21.34■■□□□ 1.01
VIM-203ENST00000469543 PLEKP08567 350 aaPredicted RBP21.34■■□□□ 1.01
VIM-203ENST00000469543 MTIF2P46199 727 aaKnown RBP21.34■■□□□ 1.01
VIM-203ENST00000469543 PLA2G4AP47712 749 aa21.34■■□□□ 1.01
VIM-203ENST00000469543 ASPRV1Q53RT3 343 aa21.34■■□□□ 1.01
VIM-203ENST00000469543 NOC4LQ9BVI4 516 aaKnown RBP21.34■■□□□ 1.01
VIM-203ENST00000469543 PNMA6FA0A0J9YX94 578 aa21.33■■□□□ 1.01
VIM-203ENST00000469543 MMP10P09238 476 aa21.33■■□□□ 1.01
VIM-203ENST00000469543 SMARCA1P28370 1054 aa21.33■■□□□ 1.01
VIM-203ENST00000469543 LARP4BQ92615 738 aaKnown RBP21.33■■□□□ 1.01
VIM-203ENST00000469543 CHMP4BP1P59074 171 aa21.33■■□□□ 1.01
VIM-203ENST00000469543 NCAPH2Q6IBW4 605 aa21.33■■□□□ 1.01
VIM-203ENST00000469543 CDK5RAP3Q96JB5 506 aa21.33■■□□□ 1.01
VIM-203ENST00000469543 KANSL2Q9H9L4 492 aa21.33■■□□□ 1.01
VIM-203ENST00000469543 ZCCHC17Q9NP64 241 aaKnown RBP21.33■■□□□ 1.01
VIM-203ENST00000469543 CAPN11Q9UMQ6 739 aa21.33■■□□□ 1.01
VIM-203ENST00000469543 CTAGE9A4FU28 777 aa21.32■■□□□ 1
VIM-203ENST00000469543 SSBP05455 408 aaKnown RBP eCLIP21.32■■□□□ 1
VIM-203ENST00000469543 MYL1P05976 194 aa21.32■■□□□ 1
VIM-203ENST00000469543 ZSCAN29Q8IWY8 852 aaPredicted RBP21.32■■□□□ 1
VIM-203ENST00000469543 DDX12PQ92771 950 aa21.32■■□□□ 1
VIM-203ENST00000469543 TEKT1Q969V4 418 aa21.32■■□□□ 1
VIM-203ENST00000469543 FGFBP2Q9BYJ0 223 aa21.32■■□□□ 1
VIM-203ENST00000469543 PSTPIP2Q9H939 334 aa21.32■■□□□ 1
VIM-203ENST00000469543 ESYT2A0FGR8 921 aa21.32■■□□□ 1
VIM-203ENST00000469543 SRGAP2O75044 1071 aa21.32■■□□□ 1
VIM-203ENST00000469543 CRKP46108 304 aa21.32■■□□□ 1
VIM-203ENST00000469543 HERVK_113P62684 666 aa21.32■■□□□ 1
VIM-203ENST00000469543 DNAJC7Q99615 494 aa21.32■■□□□ 1
VIM-203ENST00000469543 LACRTQ9GZZ8 138 aa21.32■■□□□ 1
VIM-203ENST00000469543 DDX25Q9UHL0 483 aaKnown RBP21.32■■□□□ 1
VIM-203ENST00000469543 CDC23Q9UJX2 597 aa21.32■■□□□ 1
VIM-203ENST00000469543 DNM2P50570 870 aa21.32■■□□□ 1
VIM-203ENST00000469543 BMS1Q14692 1282 aaKnown RBP21.32■■□□□ 1
VIM-203ENST00000469543 KRT26Q7Z3Y9 468 aa21.32■■□□□ 1
VIM-203ENST00000469543 CUEDC2Q9H467 287 aa21.32■■□□□ 1
VIM-203ENST00000469543 FAM207AQ9NSI2 230 aaPredicted RBP21.32■■□□□ 1
VIM-203ENST00000469543 NPHP3-ACAD11A0A0J9YXS1 232 aa21.31■■□□□ 1
VIM-203ENST00000469543 RHOXF2BP0C7M4 288 aa21.31■■□□□ 1
VIM-203ENST00000469543 EEF2P13639 858 aaKnown RBP21.31■■□□□ 1
VIM-203ENST00000469543 CC2D1AQ6P1N0 951 aaPredicted RBP21.31■■□□□ 1
VIM-203ENST00000469543 GPR161Q8N6U8 529 aaKnown RBP21.31■■□□□ 1
VIM-203ENST00000469543 P2RX7Q99572 595 aaKnown RBP21.31■■□□□ 1
VIM-203ENST00000469543 RHOXF2Q9BQY4 288 aa21.31■■□□□ 1
VIM-203ENST00000469543 TTYH3Q9C0H2 523 aa21.31■■□□□ 1
VIM-203ENST00000469543 SUGCTQ9HAC7 445 aa21.31■■□□□ 1
VIM-203ENST00000469543 POLD4Q9HCU8 107 aa21.31■■□□□ 1
VIM-203ENST00000469543 RIC8AQ9NPQ8 531 aa21.31■■□□□ 1
VIM-203ENST00000469543 MARCH6O60337 910 aa21.31■■□□□ 1
VIM-203ENST00000469543 AMPD3Q01432 767 aa21.31■■□□□ 1
VIM-203ENST00000469543 SH3BP5LQ7L8J4 393 aa21.31■■□□□ 1
VIM-203ENST00000469543 PNKPQ96T60 521 aa21.31■■□□□ 1
VIM-203ENST00000469543 A0A1W2PQC6 194 aa21.3■■□□□ 1
VIM-203ENST00000469543 ZBTB5O15062 677 aa21.3■■□□□ 1
VIM-203ENST00000469543 GDF11O95390 407 aa21.3■■□□□ 1
VIM-203ENST00000469543 TBC1D8O95759 1140 aa21.3■■□□□ 1
VIM-203ENST00000469543 SRGAP1Q7Z6B7 1085 aa21.3■■□□□ 1
VIM-203ENST00000469543 GOLGA1Q92805 767 aa21.3■■□□□ 1
VIM-203ENST00000469543 ANKZF1Q9H8Y5 726 aa21.3■■□□□ 1
VIM-203ENST00000469543 E9PMD0 336 aa21.3■■□□□ 1
VIM-203ENST00000469543 STAT3P40763 770 aa21.3■■□□□ 1
VIM-203ENST00000469543 FXR2P51116 673 aaKnown RBP eCLIP21.3■■□□□ 1
VIM-203ENST00000469543 SIAH1Q8IUQ4 282 aa21.3■■□□□ 1
VIM-203ENST00000469543 RNF216Q9NWF9 866 aaPredicted RBP21.3■■□□□ 1
VIM-203ENST00000469543 JAG1P78504 1218 aa21.29■■□□□ 1
VIM-203ENST00000469543 TRIM14Q14142 442 aa21.29■■□□□ 1
VIM-203ENST00000469543 KRT79Q5XKE5 535 aa21.29■■□□□ 1
VIM-203ENST00000469543 CENPPQ6IPU0 288 aa21.29■■□□□ 1
VIM-203ENST00000469543 CNNM4Q6P4Q7 775 aa21.29■■□□□ 1
VIM-203ENST00000469543 NOA1Q8NC60 698 aaKnown RBP21.29■■□□□ 1
VIM-203ENST00000469543 RAD54LQ92698 747 aa21.29■■□□□ 1
VIM-203ENST00000469543 ARGLU1Q9NWB6 273 aaPredicted RBP21.29■■□□□ 1
VIM-203ENST00000469543 PCDHA12Q9UN75 941 aa21.29■■□□□ 1
VIM-203ENST00000469543 POLR3GO15318 223 aaPredicted RBP21.29■■□□□ 1
VIM-203ENST00000469543 CLK2P49760 499 aaKnown RBP21.29■■□□□ 1
VIM-203ENST00000469543 SEPT2Q15019 361 aa21.29■■□□□ 1
VIM-203ENST00000469543 QRICH1Q2TAL8 776 aa21.29■■□□□ 1
VIM-203ENST00000469543 CCDC122Q5T0U0 273 aa21.29■■□□□ 1
VIM-203ENST00000469543 CUL5Q93034 780 aa21.29■■□□□ 1
VIM-203ENST00000469543 NHEJ1Q9H9Q4 299 aaPredicted RBP21.29■■□□□ 1
VIM-203ENST00000469543 PCDHA1Q9Y5I3 950 aa21.29■■□□□ 1
VIM-203ENST00000469543 PLIN4Q96Q06 1357 aa21.29■■□□□ 1
VIM-203ENST00000469543 LTBP1Q14766 1721 aa21.28■■□□□ 1
VIM-203ENST00000469543 NPR1P16066 1061 aa21.28■■□□□ 1
VIM-203ENST00000469543 TMEM266Q2M3C6 531 aa21.28■■□□□ 1
VIM-203ENST00000469543 SLC30A10Q6XR72 485 aa21.28■■□□□ 1
VIM-203ENST00000469543 RABGGTAQ92696 567 aa21.28■■□□□ 1
VIM-203ENST00000469543 CCDC47Q96A33 483 aaKnown RBP21.28■■□□□ 1
VIM-203ENST00000469543 NAPGQ99747 312 aaPredicted RBP21.28■■□□□ 1
VIM-203ENST00000469543 HINFPQ9BQA5 517 aa21.28■■□□□ 1
VIM-203ENST00000469543 FAM198AQ9UFP1 575 aa21.28■■□□□ 1
VIM-203ENST00000469543 BICDL2A1A5D9 508 aa21.28■■□□□ 1
VIM-203ENST00000469543 SLC1A4P43007 532 aa21.28■■□□□ 1
VIM-203ENST00000469543 APBA1Q02410 837 aa21.28■■□□□ 1
VIM-203ENST00000469543 TERF2Q15554 542 aa21.28■■□□□ 1
VIM-203ENST00000469543 USH1GQ495M9 461 aa21.28■■□□□ 1
VIM-203ENST00000469543 SMCR8Q8TEV9 937 aaPredicted RBP21.28■■□□□ 1
VIM-203ENST00000469543 ANKRD31Q8N7Z5 1873 aa21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 102.2 ms