RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 NUP88Q99567 741 aaPredicted RBP13.96□□□□□ -0.17
SQSTM1-206ENST00000466342 TEX13BQ9BXU2 312 aa13.96□□□□□ -0.17
SQSTM1-206ENST00000466342 KATNBL1Q9H079 304 aa13.96□□□□□ -0.17
SQSTM1-206ENST00000466342 FEM1BQ9UK73 627 aa13.96□□□□□ -0.17
SQSTM1-206ENST00000466342 RIPK3Q9Y572 518 aa13.96□□□□□ -0.17
SQSTM1-206ENST00000466342 ASTN1O14525 1302 aa13.95□□□□□ -0.18
SQSTM1-206ENST00000466342 SIP14410 1827 aa13.95□□□□□ -0.18
SQSTM1-206ENST00000466342 ATP2A1O14983 1001 aa13.95□□□□□ -0.18
SQSTM1-206ENST00000466342 ZEB2O60315 1214 aa13.95□□□□□ -0.18
SQSTM1-206ENST00000466342 ZBED4O75132 1171 aa13.95□□□□□ -0.18
SQSTM1-206ENST00000466342 FDX1P10109 184 aa13.95□□□□□ -0.18
SQSTM1-206ENST00000466342 SNRNP48Q6IEG0 339 aaKnown RBP13.95□□□□□ -0.18
SQSTM1-206ENST00000466342 NOL8Q76FK4 1167 aaKnown RBP13.95□□□□□ -0.18
SQSTM1-206ENST00000466342 PHOX2BQ99453 314 aa13.95□□□□□ -0.18
SQSTM1-206ENST00000466342 ZNF536O15090 1300 aa13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 GRXCR2A6NFK2 248 aa13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 REC8O95072 547 aa13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 SUPT20HL2P0C7V6 817 aa13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 BMP3P12645 472 aa13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 KCNA5P22460 613 aa13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 RFC2P35250 354 aa13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 NECTIN1Q15223 517 aa13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 FSCN1Q16658 493 aaKnown RBP13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 PUS10Q3MIT2 529 aaKnown RBP13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 SLFN13Q68D06 897 aa13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 PTCRAQ6ISU1 281 aaPredicted RBP13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 HFE2Q6ZVN8 426 aa13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 SPRED2Q7Z698 418 aa13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 CCDC144CPQ8IYA2 1237 aa13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 LRRC47Q8N1G4 583 aaKnown RBP13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 ESR2Q92731 530 aa13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 GMCL1Q96IK5 515 aa13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 FGD4Q96M96 766 aa13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 MFSD14AQ96MC6 490 aa13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 KRT23Q9C075 422 aa13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 AP5M1Q9H0R1 490 aa13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 ALDH8A1Q9H2A2 487 aaPredicted RBP13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 CNNM2Q9H8M5 875 aa13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 GNEQ9Y223 722 aaKnown RBP13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 CTDP1Q9Y5B0 961 aaPredicted RBP13.94□□□□□ -0.18
SQSTM1-206ENST00000466342 TANC1Q9C0D5 1861 aa13.93□□□□□ -0.18
SQSTM1-206ENST00000466342 B4E1Z4 1266 aa13.93□□□□□ -0.18
SQSTM1-206ENST00000466342 SLC27A2O14975 620 aa13.93□□□□□ -0.18
SQSTM1-206ENST00000466342 PSMC6P62333 389 aa13.93□□□□□ -0.18
SQSTM1-206ENST00000466342 CREB3L3Q68CJ9 461 aa13.93□□□□□ -0.18
SQSTM1-206ENST00000466342 TLK2Q86UE8 772 aa13.93□□□□□ -0.18
SQSTM1-206ENST00000466342 ANKRD35Q8N283 1001 aa13.93□□□□□ -0.18
SQSTM1-206ENST00000466342 CHURC1Q8WUH1 139 aa13.93□□□□□ -0.18
SQSTM1-206ENST00000466342 SLC38A10Q9HBR0 1119 aa13.93□□□□□ -0.18
SQSTM1-206ENST00000466342 IL17RBQ9NRM6 502 aa13.93□□□□□ -0.18
SQSTM1-206ENST00000466342 TCP11L1Q9NUJ3 509 aa13.93□□□□□ -0.18
SQSTM1-206ENST00000466342 STX8Q9UNK0 236 aa13.93□□□□□ -0.18
SQSTM1-206ENST00000466342 TAF6LQ9Y6J9 622 aa13.93□□□□□ -0.18
SQSTM1-206ENST00000466342 E7EWF7 191 aa13.92□□□□□ -0.18
SQSTM1-206ENST00000466342 DYNC1LI2O43237 492 aaPredicted RBP13.92□□□□□ -0.18
SQSTM1-206ENST00000466342 EPB41L2O43491 1005 aaKnown RBP13.92□□□□□ -0.18
SQSTM1-206ENST00000466342 NMT2O60551 498 aa13.92□□□□□ -0.18
SQSTM1-206ENST00000466342 PLA2G6O60733 806 aa13.92□□□□□ -0.18
SQSTM1-206ENST00000466342 KDM4AO75164 1064 aa13.92□□□□□ -0.18
SQSTM1-206ENST00000466342 CYP2C9P11712 490 aa13.92□□□□□ -0.18
SQSTM1-206ENST00000466342 NOVP48745 357 aa13.92□□□□□ -0.18
SQSTM1-206ENST00000466342 SLC4A3P48751 1232 aa13.92□□□□□ -0.18
SQSTM1-206ENST00000466342 OAZ1P54368 228 aa13.92□□□□□ -0.18
SQSTM1-206ENST00000466342 TRDNQ13061 729 aa13.92□□□□□ -0.18
SQSTM1-206ENST00000466342 RNF20Q5VTR2 975 aa13.92□□□□□ -0.18
SQSTM1-206ENST00000466342 FAM160B2Q86V87 743 aa13.92□□□□□ -0.18
SQSTM1-206ENST00000466342 GDPD5Q8WTR4 605 aa13.92□□□□□ -0.18
SQSTM1-206ENST00000466342 ANKS1AQ92625 1134 aa13.92□□□□□ -0.18
SQSTM1-206ENST00000466342 KIFC2Q96AC6 838 aa13.92□□□□□ -0.18
SQSTM1-206ENST00000466342 SUGCTQ9HAC7 445 aa13.92□□□□□ -0.18
SQSTM1-206ENST00000466342 TMEM232C9JQI7 657 aa13.91□□□□□ -0.18
SQSTM1-206ENST00000466342 SLC1A4P43007 532 aa13.91□□□□□ -0.18
SQSTM1-206ENST00000466342 STAT2P52630 851 aa13.91□□□□□ -0.18
SQSTM1-206ENST00000466342 RCSD1Q6JBY9 416 aa13.91□□□□□ -0.18
SQSTM1-206ENST00000466342 STOX1Q6ZVD7 989 aa13.91□□□□□ -0.18
SQSTM1-206ENST00000466342 IQCA1Q86XH1 822 aa13.91□□□□□ -0.18
SQSTM1-206ENST00000466342 CPXCR1Q8N123 301 aa13.91□□□□□ -0.18
SQSTM1-206ENST00000466342 NCOA7Q8NI08 942 aa13.91□□□□□ -0.18
SQSTM1-206ENST00000466342 FTOQ9C0B1 505 aaKnown RBP eCLIP13.91□□□□□ -0.18
SQSTM1-206ENST00000466342 TRMT13Q9NUP7 481 aaKnown RBP13.91□□□□□ -0.18
SQSTM1-206ENST00000466342 ZSWIM5Q9P217 1185 aa13.91□□□□□ -0.18
SQSTM1-206ENST00000466342 FBXO40Q9UH90 709 aa13.91□□□□□ -0.18
SQSTM1-206ENST00000466342 Q9Y3F1 56 aa13.91□□□□□ -0.18
SQSTM1-206ENST00000466342 TNKSO95271 1327 aa13.9□□□□□ -0.18
SQSTM1-206ENST00000466342 LCHNA4D1U4 455 aa13.9□□□□□ -0.18
SQSTM1-206ENST00000466342 BAIAP3O94812 1187 aa13.9□□□□□ -0.18
SQSTM1-206ENST00000466342 IQCF3P0C7M6 154 aa13.9□□□□□ -0.18
SQSTM1-206ENST00000466342 MCCP23508 829 aa13.9□□□□□ -0.18
SQSTM1-206ENST00000466342 HSPA4P34932 840 aa13.9□□□□□ -0.18
SQSTM1-206ENST00000466342 RALYLQ86SE5 291 aaKnown RBP13.9□□□□□ -0.18
SQSTM1-206ENST00000466342 CHST13Q8NET6 341 aa13.9□□□□□ -0.18
SQSTM1-206ENST00000466342 NEK9Q8TD19 979 aa13.9□□□□□ -0.18
SQSTM1-206ENST00000466342 UPF3BQ9BZI7 483 aaKnown RBP13.9□□□□□ -0.18
SQSTM1-206ENST00000466342 RAVER2Q9HCJ3 691 aaKnown RBP13.9□□□□□ -0.18
SQSTM1-206ENST00000466342 PRKAG3Q9UGI9 489 aa13.9□□□□□ -0.18
SQSTM1-206ENST00000466342 C5orf42Q9H799 3197 aa13.9□□□□□ -0.18
SQSTM1-206ENST00000466342 C19orf67A6NJJ6 358 aa13.89□□□□□ -0.19
SQSTM1-206ENST00000466342 EIF5BO60841 1220 aaKnown RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms