RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 RNF146Q9NTX7 359 aa20.19■□□□□ 0.82
CPSF4-209ENST00000465132 CUL9Q8IWT3 2517 aa20.19■□□□□ 0.82
CPSF4-209ENST00000465132 TMEM265A0A087WTH1 108 aa20.18■□□□□ 0.82
CPSF4-209ENST00000465132 GOLGA8AA7E2F4 631 aa20.18■□□□□ 0.82
CPSF4-209ENST00000465132 CTAGE5O15320 804 aa20.18■□□□□ 0.82
CPSF4-209ENST00000465132 NKX3-2P78367 333 aa20.18■□□□□ 0.82
CPSF4-209ENST00000465132 APOBRQ0VD83 1088 aa20.18■□□□□ 0.82
CPSF4-209ENST00000465132 TOB2Q14106 344 aaPredicted RBP20.18■□□□□ 0.82
CPSF4-209ENST00000465132 RTN1Q16799 776 aa20.18■□□□□ 0.82
CPSF4-209ENST00000465132 TKFCQ3LXA3 575 aa20.18■□□□□ 0.82
CPSF4-209ENST00000465132 MICU3Q86XE3 530 aa20.18■□□□□ 0.82
CPSF4-209ENST00000465132 MAFAQ8NHW3 353 aaPredicted RBP20.18■□□□□ 0.82
CPSF4-209ENST00000465132 MYLIPQ8WY64 445 aa20.18■□□□□ 0.82
CPSF4-209ENST00000465132 VTI1AQ96AJ9 217 aa20.18■□□□□ 0.82
CPSF4-209ENST00000465132 SH2B1Q9NRF2 756 aaPredicted RBP20.18■□□□□ 0.82
CPSF4-209ENST00000465132 A0A0U1RQG5 324 aaPredicted RBP20.17■□□□□ 0.82
CPSF4-209ENST00000465132 SOWAHBA6NEL2 793 aa20.17■□□□□ 0.82
CPSF4-209ENST00000465132 KLRF2D3W0D1 207 aa20.17■□□□□ 0.82
CPSF4-209ENST00000465132 CPLX1O14810 134 aa20.17■□□□□ 0.82
CPSF4-209ENST00000465132 CDKL5O76039 1030 aa20.17■□□□□ 0.82
CPSF4-209ENST00000465132 MFSD5Q6N075 450 aa20.17■□□□□ 0.82
CPSF4-209ENST00000465132 BTNL9Q6UXG8 535 aa20.17■□□□□ 0.82
CPSF4-209ENST00000465132 TRERF1Q96PN7 1200 aa20.17■□□□□ 0.82
CPSF4-209ENST00000465132 SLKQ9H2G2 1235 aaPredicted RBP20.17■□□□□ 0.82
CPSF4-209ENST00000465132 PALM3A6NDB9 673 aaPredicted RBP20.16■□□□□ 0.82
CPSF4-209ENST00000465132 ASB14A6NK59 587 aa20.16■□□□□ 0.82
CPSF4-209ENST00000465132 ARVCFO00192 962 aa20.16■□□□□ 0.82
CPSF4-209ENST00000465132 TNFAIP2Q03169 654 aa20.16■□□□□ 0.82
CPSF4-209ENST00000465132 KCTD1Q719H9 257 aa20.16■□□□□ 0.82
CPSF4-209ENST00000465132 GPCPD1Q9NPB8 672 aa20.16■□□□□ 0.82
CPSF4-209ENST00000465132 GPHNQ9NQX3 736 aaPredicted RBP20.16■□□□□ 0.82
CPSF4-209ENST00000465132 BRPF3Q9ULD4 1205 aa20.16■□□□□ 0.82
CPSF4-209ENST00000465132 PRR12Q9ULL5 1215 aa20.16■□□□□ 0.82
CPSF4-209ENST00000465132 NID2Q14112 1375 aa20.16■□□□□ 0.82
CPSF4-209ENST00000465132 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.15■□□□□ 0.82
CPSF4-209ENST00000465132 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.15■□□□□ 0.82
CPSF4-209ENST00000465132 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.15■□□□□ 0.82
CPSF4-209ENST00000465132 ALAS1P13196 640 aa20.15■□□□□ 0.82
CPSF4-209ENST00000465132 FOSL2P15408 326 aa20.15■□□□□ 0.82
CPSF4-209ENST00000465132 PDIA3P30101 505 aaKnown RBP20.15■□□□□ 0.82
CPSF4-209ENST00000465132 SNAP25P60880 206 aa20.15■□□□□ 0.82
CPSF4-209ENST00000465132 CCDC174Q6PII3 467 aa20.15■□□□□ 0.82
CPSF4-209ENST00000465132 FAM126BQ8IXS8 530 aa20.15■□□□□ 0.82
CPSF4-209ENST00000465132 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.15■□□□□ 0.822e-6■■■□□ 15.6
CPSF4-209ENST00000465132 SENP2Q9HC62 589 aa20.15■□□□□ 0.82
CPSF4-209ENST00000465132 MAD2L2Q9UI95 211 aa20.15■□□□□ 0.82
CPSF4-209ENST00000465132 ASTN1O14525 1302 aa20.15■□□□□ 0.82
CPSF4-209ENST00000465132 MCM3APO60318 1980 aa20.15■□□□□ 0.82
CPSF4-209ENST00000465132 FRMPD2Q68DX3 1309 aaPredicted RBP20.14■□□□□ 0.81
CPSF4-209ENST00000465132 BEX3Q00994 111 aa20.14■□□□□ 0.81
CPSF4-209ENST00000465132 AKAP17AQ02040 695 aaKnown RBP20.14■□□□□ 0.81
CPSF4-209ENST00000465132 PPIGQ13427 754 aaKnown RBP eCLIP20.14■□□□□ 0.81
CPSF4-209ENST00000465132 SYDE2Q5VT97 1194 aa20.14■□□□□ 0.81
CPSF4-209ENST00000465132 NOL8Q76FK4 1167 aaKnown RBP20.14■□□□□ 0.81
CPSF4-209ENST00000465132 C16orf59Q7L2K0 433 aa20.14■□□□□ 0.81
CPSF4-209ENST00000465132 RASGRP2Q7LDG7 609 aa20.14■□□□□ 0.81
CPSF4-209ENST00000465132 SEC63Q9UGP8 760 aaKnown RBP20.14■□□□□ 0.81
CPSF4-209ENST00000465132 GNEQ9Y223 722 aaKnown RBP20.14■□□□□ 0.81
CPSF4-209ENST00000465132 UNC80Q8N2C7 3258 aa20.14■□□□□ 0.81
CPSF4-209ENST00000465132 TLR3O15455 904 aaKnown RBP20.13■□□□□ 0.81
CPSF4-209ENST00000465132 PFKFB2O60825 505 aa20.13■□□□□ 0.81
CPSF4-209ENST00000465132 DNAJB2P25686 324 aa20.13■□□□□ 0.81
CPSF4-209ENST00000465132 COL9A3Q14050 684 aaPredicted RBP20.13■□□□□ 0.81
CPSF4-209ENST00000465132 MUM1L1Q5H9M0 696 aa20.13■□□□□ 0.81
CPSF4-209ENST00000465132 TLK2Q86UE8 772 aa20.13■□□□□ 0.81
CPSF4-209ENST00000465132 TRIM22Q8IYM9 498 aa20.13■□□□□ 0.81
CPSF4-209ENST00000465132 SPZ1Q9BXG8 430 aa20.13■□□□□ 0.81
CPSF4-209ENST00000465132 CYP39A1Q9NYL5 469 aa20.13■□□□□ 0.81
CPSF4-209ENST00000465132 DDX49Q9Y6V7 483 aaKnown RBP20.13■□□□□ 0.81
CPSF4-209ENST00000465132 CD4P01730 458 aa20.12■□□□□ 0.81
CPSF4-209ENST00000465132 GOLGA8HP0CJ92 632 aa20.12■□□□□ 0.81
CPSF4-209ENST00000465132 CSF2RAP15509 400 aa20.12■□□□□ 0.81
CPSF4-209ENST00000465132 TMEM240Q5SV17 173 aa20.12■□□□□ 0.81
CPSF4-209ENST00000465132 CXCL17Q6UXB2 119 aa20.12■□□□□ 0.81
CPSF4-209ENST00000465132 TMEM199Q8N511 208 aa20.12■□□□□ 0.81
CPSF4-209ENST00000465132 SLC43A3Q8NBI5 491 aa20.12■□□□□ 0.81
CPSF4-209ENST00000465132 RRP36Q96EU6 259 aaKnown RBP20.12■□□□□ 0.81
CPSF4-209ENST00000465132 MYL10Q9BUA6 226 aa20.12■□□□□ 0.81
CPSF4-209ENST00000465132 CCPG1Q9ULG6 757 aa20.12■□□□□ 0.81
CPSF4-209ENST00000465132 TPCN1Q9ULQ1 816 aa20.12■□□□□ 0.81
CPSF4-209ENST00000465132 CABYRO75952 493 aa20.11■□□□□ 0.81
CPSF4-209ENST00000465132 SMPD1P17405 629 aa20.11■□□□□ 0.81
CPSF4-209ENST00000465132 GRIN2CQ14957 1233 aa20.11■□□□□ 0.81
CPSF4-209ENST00000465132 FSCN1Q16658 493 aaKnown RBP20.11■□□□□ 0.81
CPSF4-209ENST00000465132 RASIP1Q5U651 963 aa20.11■□□□□ 0.81
CPSF4-209ENST00000465132 TMTC3Q6ZXV5 915 aa20.11■□□□□ 0.81
CPSF4-209ENST00000465132 HSCBQ8IWL3 235 aa20.11■□□□□ 0.81
CPSF4-209ENST00000465132 SNX21Q969T3 373 aa20.11■□□□□ 0.81
CPSF4-209ENST00000465132 PPP1R12CQ9BZL4 782 aa20.11■□□□□ 0.81
CPSF4-209ENST00000465132 AP5M1Q9H0R1 490 aa20.11■□□□□ 0.81
CPSF4-209ENST00000465132 PDGFCQ9NRA1 345 aa20.11■□□□□ 0.81
CPSF4-209ENST00000465132 DYNC1LI2O43237 492 aaPredicted RBP20.1■□□□□ 0.81
CPSF4-209ENST00000465132 ICAM1P05362 532 aa20.1■□□□□ 0.81
CPSF4-209ENST00000465132 PTGS1P23219 599 aa20.1■□□□□ 0.81
CPSF4-209ENST00000465132 BECN1Q14457 450 aa20.1■□□□□ 0.81
CPSF4-209ENST00000465132 IQSEC1Q6DN90 963 aa20.1■□□□□ 0.81
CPSF4-209ENST00000465132 TTBK2Q6IQ55 1244 aa20.1■□□□□ 0.81
CPSF4-209ENST00000465132 TAPT1Q6NXT6 567 aa20.1■□□□□ 0.81
CPSF4-209ENST00000465132 NSMFQ6X4W1 530 aa20.1■□□□□ 0.81
CPSF4-209ENST00000465132 ZNF365Q70YC5 407 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms