RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 ANKRD40Q6AI12 368 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 GALNT17Q6IS24 598 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 KRT26Q7Z3Y9 468 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 ZNF34Q8IZ26 560 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 EIF1ADQ8N9N8 165 aaKnown RBP8.09□□□□□ -1.11
USP48-206ENST00000464577 C3orf20Q8ND61 904 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 RASSF8Q8NHQ8 419 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 SMCR8Q8TEV9 937 aaPredicted RBP8.09□□□□□ -1.11
USP48-206ENST00000464577 WHAMMQ8TF30 809 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 AK8Q96MA6 479 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 TLR10Q9BXR5 811 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 ZNF804BA4D1E1 1349 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 FLT1P17948 1338 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 FAM205AQ6ZU69 1335 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 SSU72P8A0A1W2PR75 194 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 HMGB1P1B2RPK0 211 aaPredicted RBP8.09□□□□□ -1.11
USP48-206ENST00000464577 RBAK-RBAKDNI3L0D1 243 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 PPP1R37O75864 691 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 PLEKP08567 350 aaPredicted RBP8.09□□□□□ -1.11
USP48-206ENST00000464577 ATF3P18847 181 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 NR1D1P20393 614 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 MAP2K2P36507 400 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 ATP6V1AP38606 617 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 MAGEA1P43355 309 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 SLC7A5Q01650 507 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 VWA3BQ502W6 1294 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 TYW1BQ6NUM6 668 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 CCDC84Q86UT8 332 aaPredicted RBP8.09□□□□□ -1.11
USP48-206ENST00000464577 C2CD5Q86YS7 1000 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 ZNF473Q8WTR7 871 aaKnown RBP8.09□□□□□ -1.11
USP48-206ENST00000464577 RNPC3Q96LT9 517 aaKnown RBP8.09□□□□□ -1.11
USP48-206ENST00000464577 CCDC43Q96MW1 224 aaKnown RBP8.09□□□□□ -1.11
USP48-206ENST00000464577 NOX5Q96PH1 765 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 TRIM9Q9C026 710 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 CXorf56Q9H5V9 222 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 VCPKMTQ9H867 229 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 RBM12Q9NTZ6 932 aaKnown RBP8.09□□□□□ -1.11
USP48-206ENST00000464577 SLIT2O94813 1529 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 A0A1B0GUL6 1792 aa8.09□□□□□ -1.12
USP48-206ENST00000464577 LAMB2P55268 1798 aa8.09□□□□□ -1.12
USP48-206ENST00000464577 CASZ1Q86V15 1759 aa8.08□□□□□ -1.12
USP48-206ENST00000464577 CCDC194A0A1B0GVG4 234 aa8.08□□□□□ -1.12
USP48-206ENST00000464577 ZNF233A6NK53 670 aa8.08□□□□□ -1.12
USP48-206ENST00000464577 ADAMTS3O15072 1205 aa8.08□□□□□ -1.12
USP48-206ENST00000464577 AKR1B10O60218 316 aa8.08□□□□□ -1.12
USP48-206ENST00000464577 FGFR1OPO95684 399 aaKnown RBP8.08□□□□□ -1.12
USP48-206ENST00000464577 CYP19A1P11511 503 aaPredicted RBP8.08□□□□□ -1.12
USP48-206ENST00000464577 MMP14P50281 582 aa8.08□□□□□ -1.12
USP48-206ENST00000464577 SMTNP53814 917 aa8.08□□□□□ -1.12
USP48-206ENST00000464577 PDE4DQ08499 809 aa8.08□□□□□ -1.12
USP48-206ENST00000464577 MAN2A1Q16706 1144 aa8.08□□□□□ -1.12
USP48-206ENST00000464577 ASTE1Q2TB18 679 aaPredicted RBP8.08□□□□□ -1.12
USP48-206ENST00000464577 KLHDC7AQ5VTJ3 777 aa8.08□□□□□ -1.12
USP48-206ENST00000464577 PPP4R3AQ6IN85 833 aa8.08□□□□□ -1.12
USP48-206ENST00000464577 CENPPQ6IPU0 288 aa8.08□□□□□ -1.12
USP48-206ENST00000464577 CNNM4Q6P4Q7 775 aa8.08□□□□□ -1.12
USP48-206ENST00000464577 PDXDC1Q6P996 788 aa8.08□□□□□ -1.12
USP48-206ENST00000464577 FOXR2Q6PJQ5 311 aa8.08□□□□□ -1.12
USP48-206ENST00000464577 LRIG3Q6UXM1 1119 aa8.08□□□□□ -1.12
USP48-206ENST00000464577 PIK3R5Q8WYR1 880 aa8.08□□□□□ -1.12
USP48-206ENST00000464577 DDX17Q92841 729 aaKnown RBP8.08□□□□□ -1.12
USP48-206ENST00000464577 ATP6V1G3Q96LB4 118 aa8.08□□□□□ -1.12
USP48-206ENST00000464577 TMEM60Q9H2L4 133 aa8.08□□□□□ -1.12
USP48-206ENST00000464577 PP2D1A8MPX8 630 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 H0YHG0 523 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 SMIM22K7EJ46 135 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 CHUKO15111 745 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 HEXIM1O94992 359 aaKnown RBP8.07□□□□□ -1.12
USP48-206ENST00000464577 FAM107AO95990 144 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 PLCG1P19174 1290 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 HSPA9P38646 679 aaKnown RBP8.07□□□□□ -1.12
USP48-206ENST00000464577 MDH1P40925 334 aaKnown RBP8.07□□□□□ -1.12
USP48-206ENST00000464577 MATR3P43243 847 aaKnown RBP eCLIP8.07□□□□□ -1.12
USP48-206ENST00000464577 ASIC1P78348 528 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 AMPD3Q01432 767 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 ACTN3Q08043 901 aaPredicted RBP8.07□□□□□ -1.12
USP48-206ENST00000464577 TTC19Q6DKK2 380 aaPredicted RBP8.07□□□□□ -1.12
USP48-206ENST00000464577 CABP7Q86V35 215 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 NLRP14Q86W24 1093 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 TEX2Q8IWB9 1127 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 SH2D3CQ8N5H7 860 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 ARFGAP2Q8N6H7 521 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 MYCBPAPQ8TBZ2 947 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 LRRC15Q8TF66 581 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 BAP1Q92560 729 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 NDST4Q9H3R1 872 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 RABEP2Q9H5N1 569 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 ACTR5Q9H9F9 607 aaPredicted RBP8.07□□□□□ -1.12
USP48-206ENST00000464577 ASAP1Q9ULH1 1129 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 MYH1P12882 1939 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 SCN7AQ01118 1682 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 COL1A1P02452 1464 aaPredicted RBP8.07□□□□□ -1.12
USP48-206ENST00000464577 CYP2D7A0A087X1C5 515 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 SNAP23O00161 211 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 CES2O00748 559 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 NCK2O43639 380 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 C21orf2O43822 256 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 KRT14P02533 472 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 GLI1P08151 1106 aa8.07□□□□□ -1.12
USP48-206ENST00000464577 MYBP10242 640 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms