RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 GHRHRQ02643 423 aa22.03■■□□□ 1.12
VARS-220ENST00000461874 TTLL4Q14679 1199 aa22.03■■□□□ 1.12
VARS-220ENST00000461874 TMEM67Q5HYA8 995 aa22.03■■□□□ 1.12
VARS-220ENST00000461874 CENPQQ7L2Z9 268 aaPredicted RBP22.03■■□□□ 1.12
VARS-220ENST00000461874 COPS5Q92905 334 aa22.03■■□□□ 1.12
VARS-220ENST00000461874 RNPC3Q96LT9 517 aaKnown RBP22.03■■□□□ 1.12
VARS-220ENST00000461874 ESYT1Q9BSJ8 1104 aa22.03■■□□□ 1.12
VARS-220ENST00000461874 RIOX1Q9H6W3 641 aa22.03■■□□□ 1.12
VARS-220ENST00000461874 PCDHA1Q9Y5I3 950 aa22.03■■□□□ 1.12
VARS-220ENST00000461874 ARIH2O95376 493 aa22.02■■□□□ 1.12
VARS-220ENST00000461874 CFBP00751 764 aa22.02■■□□□ 1.12
VARS-220ENST00000461874 HSD17B4P51659 736 aa22.02■■□□□ 1.12
VARS-220ENST00000461874 PURAQ00577 322 aaKnown RBP22.02■■□□□ 1.12
VARS-220ENST00000461874 COL6A3P12111 3177 aa22.01■■□□□ 1.11
VARS-220ENST00000461874 A6NJR5 290 aa22.01■■□□□ 1.11
VARS-220ENST00000461874 MYL3P08590 195 aa22.01■■□□□ 1.11
VARS-220ENST00000461874 SMAD3P84022 425 aaKnown RBP22.01■■□□□ 1.11
VARS-220ENST00000461874 PPIGQ13427 754 aaKnown RBP eCLIP22.01■■□□□ 1.111e-6■■■■□ 22.4
VARS-220ENST00000461874 STXBP2Q15833 593 aa22.01■■□□□ 1.11
VARS-220ENST00000461874 BRDTQ58F21 947 aaPredicted RBP22.01■■□□□ 1.11
VARS-220ENST00000461874 ARHGEF16Q5VV41 709 aa22.01■■□□□ 1.11
VARS-220ENST00000461874 CCDC62Q6P9F0 684 aa22.01■■□□□ 1.11
VARS-220ENST00000461874 CATIPQ7Z7H3 387 aa22.01■■□□□ 1.11
VARS-220ENST00000461874 TMEM199Q8N511 208 aa22.01■■□□□ 1.11
VARS-220ENST00000461874 PIGSQ96S52 555 aa22.01■■□□□ 1.11
VARS-220ENST00000461874 PPP1R12CQ9BZL4 782 aa22.01■■□□□ 1.11
VARS-220ENST00000461874 TRPV6Q9H1D0 765 aa22.01■■□□□ 1.11
VARS-220ENST00000461874 CYTH3O43739 400 aa22■■□□□ 1.11
VARS-220ENST00000461874 KPNA6O60684 536 aa22■■□□□ 1.11
VARS-220ENST00000461874 EIF2AK2P19525 551 aaKnown RBP22■■□□□ 1.11
VARS-220ENST00000461874 TRAF1Q13077 416 aa22■■□□□ 1.11
VARS-220ENST00000461874 BMP2KLQ5H9B9 411 aa22■■□□□ 1.11
VARS-220ENST00000461874 SEPT14Q6ZU15 432 aa22■■□□□ 1.11
VARS-220ENST00000461874 C16orf59Q7L2K0 433 aa22■■□□□ 1.11
VARS-220ENST00000461874 SKAP1Q86WV1 359 aa22■■□□□ 1.11
VARS-220ENST00000461874 HOMER1Q86YM7 354 aa22■■□□□ 1.11
VARS-220ENST00000461874 SAMD3Q8N6K7 520 aa22■■□□□ 1.11
VARS-220ENST00000461874 MTG1Q9BT17 334 aaPredicted RBP22■■□□□ 1.11
VARS-220ENST00000461874 MTA3Q9BTC8 594 aa22■■□□□ 1.11
VARS-220ENST00000461874 GPHNQ9NQX3 736 aaPredicted RBP22■■□□□ 1.11
VARS-220ENST00000461874 PXMP2Q9NR77 195 aa22■■□□□ 1.11
VARS-220ENST00000461874 MAP3K20Q9NYL2 800 aaKnown RBP22■■□□□ 1.11
VARS-220ENST00000461874 STXBP5LQ9Y2K9 1186 aa22■■□□□ 1.11
VARS-220ENST00000461874 B4GALT4O60513 344 aa21.99■■□□□ 1.11
VARS-220ENST00000461874 NR3C2P08235 984 aa21.99■■□□□ 1.11
VARS-220ENST00000461874 CSF2RAP15509 400 aa21.99■■□□□ 1.11
VARS-220ENST00000461874 CYP2C18P33260 490 aa21.99■■□□□ 1.11
VARS-220ENST00000461874 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.99■■□□□ 1.112e-6■■□□□ 14.4
VARS-220ENST00000461874 ALDH8A1Q9H2A2 487 aaPredicted RBP21.99■■□□□ 1.11
VARS-220ENST00000461874 HIPK3Q9H422 1215 aa21.99■■□□□ 1.11
VARS-220ENST00000461874 LY9Q9HBG7 655 aa21.99■■□□□ 1.11
VARS-220ENST00000461874 PNMA6FA0A0J9YX94 578 aa21.98■■□□□ 1.11
VARS-220ENST00000461874 SLC27A2O14975 620 aa21.98■■□□□ 1.11
VARS-220ENST00000461874 EIF3JO75822 258 aaKnown RBP21.98■■□□□ 1.11
VARS-220ENST00000461874 TMEM240Q5SV17 173 aa21.98■■□□□ 1.11
VARS-220ENST00000461874 ZNF697Q5TEC3 545 aa21.98■■□□□ 1.11
VARS-220ENST00000461874 CASC1Q6TDU7 716 aa21.98■■□□□ 1.11
VARS-220ENST00000461874 MAP3K14Q99558 947 aa21.98■■□□□ 1.11
VARS-220ENST00000461874 NOC4LQ9BVI4 516 aaKnown RBP21.98■■□□□ 1.11
VARS-220ENST00000461874 PRC1O43663 620 aa21.97■■□□□ 1.11
VARS-220ENST00000461874 GH1P01241 217 aa21.97■■□□□ 1.11
VARS-220ENST00000461874 MCM5P33992 734 aa21.97■■□□□ 1.11
VARS-220ENST00000461874 NECTIN1Q15223 517 aa21.97■■□□□ 1.11
VARS-220ENST00000461874 LY6KQ17RY6 165 aa21.97■■□□□ 1.11
VARS-220ENST00000461874 CREB3L3Q68CJ9 461 aa21.97■■□□□ 1.11
VARS-220ENST00000461874 ZNF654Q8IZM8 581 aa21.97■■□□□ 1.11
VARS-220ENST00000461874 FAM161BQ96MY7 647 aa21.97■■□□□ 1.11
VARS-220ENST00000461874 GUCD1Q96NT3 240 aa21.97■■□□□ 1.11
VARS-220ENST00000461874 ANO2Q9NQ90 1003 aa21.97■■□□□ 1.11
VARS-220ENST00000461874 BAZ2BQ9UIF8 2168 aaKnown RBP21.97■■□□□ 1.11
VARS-220ENST00000461874 MYH6P13533 1939 aa21.96■■□□□ 1.11
VARS-220ENST00000461874 DDAH1O94760 285 aa21.96■■□□□ 1.11
VARS-220ENST00000461874 SUPT20HL2P0C7V6 817 aa21.96■■□□□ 1.11
VARS-220ENST00000461874 ACRP10323 421 aa21.96■■□□□ 1.11
VARS-220ENST00000461874 HOXA13P31271 388 aaPredicted RBP21.96■■□□□ 1.11
VARS-220ENST00000461874 ARHGAP1Q07960 439 aa21.96■■□□□ 1.11
VARS-220ENST00000461874 NBPF20Q3BBV1 942 aa21.96■■□□□ 1.11
VARS-220ENST00000461874 TMTC2Q8N394 836 aa21.96■■□□□ 1.11
VARS-220ENST00000461874 AFG1LQ8WV93 481 aa21.96■■□□□ 1.11
VARS-220ENST00000461874 TMEM87BQ96K49 555 aa21.96■■□□□ 1.11
VARS-220ENST00000461874 PDCD2LQ9BRP1 358 aa21.96■■□□□ 1.11
VARS-220ENST00000461874 SEMA6BQ9H3T3 888 aa21.96■■□□□ 1.11
VARS-220ENST00000461874 IL23AQ9NPF7 189 aa21.96■■□□□ 1.11
VARS-220ENST00000461874 TRMT13Q9NUP7 481 aaKnown RBP21.96■■□□□ 1.11
VARS-220ENST00000461874 DDX41Q9UJV9 622 aaKnown RBP21.96■■□□□ 1.11
VARS-220ENST00000461874 UMODL1Q5DID0 1318 aa21.96■■□□□ 1.11
VARS-220ENST00000461874 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.95■■□□□ 1.1
VARS-220ENST00000461874 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.95■■□□□ 1.1
VARS-220ENST00000461874 GCOM1H8Y6P7 765 aaPredicted RBP21.95■■□□□ 1.1
VARS-220ENST00000461874 SH2B2O14492 632 aaPredicted RBP21.95■■□□□ 1.1
VARS-220ENST00000461874 POLR2MP0CAP2 368 aa21.95■■□□□ 1.1
VARS-220ENST00000461874 COL9A3Q14050 684 aaPredicted RBP21.95■■□□□ 1.1
VARS-220ENST00000461874 RASIP1Q5U651 963 aa21.95■■□□□ 1.1
VARS-220ENST00000461874 NFRKBQ6P4R8 1299 aa21.95■■□□□ 1.1
VARS-220ENST00000461874 PSRC1Q6PGN9 363 aaPredicted RBP21.95■■□□□ 1.1
VARS-220ENST00000461874 ZNF365Q70YC5 407 aa21.95■■□□□ 1.1
VARS-220ENST00000461874 CTCFLQ8NI51 663 aaPredicted RBP21.95■■□□□ 1.1
VARS-220ENST00000461874 MYL10Q9BUA6 226 aa21.95■■□□□ 1.1
VARS-220ENST00000461874 SMARCA1P28370 1054 aa21.94■■□□□ 1.1
VARS-220ENST00000461874 KIF5BP33176 963 aa21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms