RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 REXO1L1PQ8IX06 675 aa7.71□□□□□ -1.17
SYNE1-216ENST00000461872 UBLCP1Q8WVY7 318 aaPredicted RBP7.71□□□□□ -1.17
SYNE1-216ENST00000461872 DNM3Q9UQ16 869 aa7.71□□□□□ -1.17
SYNE1-216ENST00000461872 NRXN3Q9Y4C0 1643 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 MAP2K7O14733 419 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 HIBADHP31937 336 aaKnown RBP7.71□□□□□ -1.18
SYNE1-216ENST00000461872 KRT26Q7Z3Y9 468 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 TRMT44Q8IYL2 757 aaKnown RBP7.71□□□□□ -1.18
SYNE1-216ENST00000461872 NEK9Q8TD19 979 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 FAM89AQ96GI7 184 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 ARMT1Q9H993 441 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 KCND2Q9NZV8 630 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 SNX12Q9UMY4 172 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 SETD1AO15047 1707 aaKnown RBP7.71□□□□□ -1.18
SYNE1-216ENST00000461872 UBE4BO95155 1302 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 A0A1W2PRG0 241 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 ZNF131P52739 623 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 PTPAQ15257 358 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 TOGARAM2Q6ZUX3 1019 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 CEP57Q86XR8 500 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 ATP6V0A2Q9Y487 856 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 MED1Q15648 1581 aaPredicted RBP7.71□□□□□ -1.18
SYNE1-216ENST00000461872 FAM187AA6NFU0 413 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 HEXIM1O94992 359 aaKnown RBP7.71□□□□□ -1.18
SYNE1-216ENST00000461872 STAMBPO95630 424 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 SMTNP53814 917 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 DHX34Q14147 1143 aaKnown RBP7.71□□□□□ -1.18
SYNE1-216ENST00000461872 RCSD1Q6JBY9 416 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 PHLDB3Q6NSJ2 640 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 ARHGEF18Q6ZSZ5 1173 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 RRAGAQ7L523 313 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 PNMA1Q8ND90 353 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 SOWAHDA6NJG2 315 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 NBPF20Q3BBV1 942 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 ATG9AQ7Z3C6 839 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 CAVIN3Q969G5 261 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 ZNF622Q969S3 477 aaKnown RBP eCLIP7.71□□□□□ -1.18
SYNE1-216ENST00000461872 VPS54Q9P1Q0 977 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 B4DLN1 442 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 CSF1RP07333 972 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 AP3B2Q13367 1082 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 SNX29Q8TEQ0 813 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 PPP1R12CQ9BZL4 782 aa7.71□□□□□ -1.18
SYNE1-216ENST00000461872 CCNT1O60563 726 aaKnown RBP7.7□□□□□ -1.18
SYNE1-216ENST00000461872 NCAPHQ15003 741 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 SMYD5Q6GMV2 418 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 OTUD7BQ6GQQ9 843 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 SYCP3Q8IZU3 236 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 GIMAP8Q8ND71 665 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-216ENST00000461872 E7EVH7 732 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 SLC16A3O15427 465 aaKnown RBP7.7□□□□□ -1.18
SYNE1-216ENST00000461872 MEFVO15553 781 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-216ENST00000461872 GUCY2CP25092 1073 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 COBLL1Q53SF7 1204 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 SYDE1Q6ZW31 735 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-216ENST00000461872 TRAPPC11Q7Z392 1133 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 SETDB2Q96T68 719 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 C7orf25Q9BPX7 421 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 IMPG2Q9BZV3 1241 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 EPN3Q9H201 632 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 SEL1LQ9UBV2 794 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 PIK3C2AO00443 1686 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 KRIT1O00522 736 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 SRGNP10124 158 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 WDR24Q96S15 920 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 MPHOSPH6Q99547 160 aaKnown RBP7.7□□□□□ -1.18
SYNE1-216ENST00000461872 PLAGL2Q9UPG8 496 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 LEMD3Q9Y2U8 911 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 ZFYVE27Q5T4F4 411 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 KCNJ14Q9UNX9 436 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 NIP7Q9Y221 180 aaKnown RBP eCLIP7.7□□□□□ -1.18
SYNE1-216ENST00000461872 FAM169AQ9Y6X4 670 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 SMAPO00193 183 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 GPTP24298 496 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 PHBP35232 272 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 NKX1-1Q15270 411 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-216ENST00000461872 PPP1R7Q15435 360 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 TYW1BQ6NUM6 668 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 STOX1Q6ZVD7 989 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 NLRP10Q86W26 655 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 ADSSL1Q8N142 457 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 SAMSN1Q9NSI8 373 aaKnown RBP7.7□□□□□ -1.18
SYNE1-216ENST00000461872 BYSLQ13895 437 aaKnown RBP7.7□□□□□ -1.18
SYNE1-216ENST00000461872 SBK1Q52WX2 424 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 EYA3Q99504 573 aa7.7□□□□□ -1.18
SYNE1-216ENST00000461872 CLNS1AP54105 237 aaKnown RBP7.7□□□□□ -1.18
SYNE1-216ENST00000461872 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.7□□□□□ -1.18
SYNE1-216ENST00000461872 NPEPPSP55786 919 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 SNRPFP62306 86 aaKnown RBP7.69□□□□□ -1.18
SYNE1-216ENST00000461872 NAALADL2Q58DX5 795 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 CHAMP1Q96JM3 812 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 FAM96AQ9H5X1 160 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 PCDHA13Q9Y5I0 950 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 PHRF1Q9P1Y6 1649 aaKnown RBP7.69□□□□□ -1.18
SYNE1-216ENST00000461872 FAM107AO95990 144 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 PRPF4BQ13523 1007 aaKnown RBP7.69□□□□□ -1.18
SYNE1-216ENST00000461872 SEC62Q99442 399 aaKnown RBP7.69□□□□□ -1.18
SYNE1-216ENST00000461872 TAF1DQ9H5J8 278 aaPredicted RBP7.69□□□□□ -1.18
SYNE1-216ENST00000461872 MRGBPQ9NV56 204 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 BCCIPQ9P287 314 aaKnown RBP eCLIP7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms