RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 KRT32Q14532 448 aa18.69■□□□□ 0.58
COL7A1-203ENST00000459756 TSGA10IPQ3SY00 556 aa18.69■□□□□ 0.58
COL7A1-203ENST00000459756 TDHQ8IZJ6 230 aa18.69■□□□□ 0.58
COL7A1-203ENST00000459756 NEK1Q96PY6 1258 aa18.69■□□□□ 0.58
COL7A1-203ENST00000459756 TAAR1Q96RJ0 339 aa18.69■□□□□ 0.58
COL7A1-203ENST00000459756 MYL10Q9BUA6 226 aa18.69■□□□□ 0.58
COL7A1-203ENST00000459756 SPZ1Q9BXG8 430 aa18.69■□□□□ 0.58
COL7A1-203ENST00000459756 LTBP2Q14767 1821 aa18.69■□□□□ 0.58
COL7A1-203ENST00000459756 BAZ2BQ9UIF8 2168 aaKnown RBP18.69■□□□□ 0.58
COL7A1-203ENST00000459756 A0A0U1RQG5 324 aaPredicted RBP18.68■□□□□ 0.58
COL7A1-203ENST00000459756 DCDC2CA8MYV0 355 aa18.68■□□□□ 0.58
COL7A1-203ENST00000459756 NKRFO15226 690 aaKnown RBP eCLIP18.68■□□□□ 0.58
COL7A1-203ENST00000459756 COL9A3Q14050 684 aaPredicted RBP18.68■□□□□ 0.58
COL7A1-203ENST00000459756 PPP2R5BQ15173 497 aa18.68■□□□□ 0.58
COL7A1-203ENST00000459756 TMEM63BQ5T3F8 832 aa18.68■□□□□ 0.58
COL7A1-203ENST00000459756 ERICH6BQ5W0A0 696 aa18.68■□□□□ 0.58
COL7A1-203ENST00000459756 SLC12A7Q9Y666 1083 aa18.68■□□□□ 0.58
COL7A1-203ENST00000459756 TRIM43BA6NCK2 446 aa18.67■□□□□ 0.58
COL7A1-203ENST00000459756 ARVCFO00192 962 aa18.67■□□□□ 0.58
COL7A1-203ENST00000459756 KIAA0355O15063 1070 aa18.67■□□□□ 0.58
COL7A1-203ENST00000459756 PTGS1P23219 599 aa18.67■□□□□ 0.58
COL7A1-203ENST00000459756 CDK7P50613 346 aa18.67■□□□□ 0.58
COL7A1-203ENST00000459756 TTLL4Q14679 1199 aa18.67■□□□□ 0.58
COL7A1-203ENST00000459756 STXBP2Q15833 593 aa18.67■□□□□ 0.58
COL7A1-203ENST00000459756 ARHGEF16Q5VV41 709 aa18.67■□□□□ 0.58
COL7A1-203ENST00000459756 CXCL17Q6UXB2 119 aa18.67■□□□□ 0.58
COL7A1-203ENST00000459756 SH3RF1Q7Z6J0 888 aa18.67■□□□□ 0.58
COL7A1-203ENST00000459756 SGMS1Q86VZ5 419 aa18.67■□□□□ 0.58
COL7A1-203ENST00000459756 TRIM43Q96BQ3 446 aaPredicted RBP18.67■□□□□ 0.58
COL7A1-203ENST00000459756 RRP36Q96EU6 259 aaKnown RBP18.67■□□□□ 0.58
COL7A1-203ENST00000459756 SEZ6LQ9BYH1 1024 aa18.67■□□□□ 0.58
COL7A1-203ENST00000459756 PXMP2Q9NR77 195 aa18.67■□□□□ 0.58
COL7A1-203ENST00000459756 PCDH10Q9P2E7 1040 aa18.67■□□□□ 0.58
COL7A1-203ENST00000459756 TXNP10599 105 aaKnown RBP18.66■□□□□ 0.58
COL7A1-203ENST00000459756 CPT1AP50416 773 aa18.66■□□□□ 0.58
COL7A1-203ENST00000459756 FAAP100Q0VG06 881 aa18.66■□□□□ 0.58
COL7A1-203ENST00000459756 DHX32Q7L7V1 743 aaKnown RBP18.66■□□□□ 0.58
COL7A1-203ENST00000459756 RASEFQ8IZ41 740 aa18.66■□□□□ 0.58
COL7A1-203ENST00000459756 OR6J1Q8NGC5 347 aa18.66■□□□□ 0.58
COL7A1-203ENST00000459756 LRRC2Q9BYS8 371 aa18.66■□□□□ 0.58
COL7A1-203ENST00000459756 TMEM39AQ9NV64 488 aa18.66■□□□□ 0.58
COL7A1-203ENST00000459756 PPP4R2Q9NY27 417 aa18.66■□□□□ 0.58
COL7A1-203ENST00000459756 SEC63Q9UGP8 760 aaKnown RBP18.66■□□□□ 0.58
COL7A1-203ENST00000459756 SZT2Q5T011 3432 aa18.66■□□□□ 0.58
COL7A1-203ENST00000459756 GCOM1H8Y6P7 765 aaPredicted RBP18.65■□□□□ 0.58
COL7A1-203ENST00000459756 EIF3JO75822 258 aaKnown RBP18.65■□□□□ 0.58
COL7A1-203ENST00000459756 HMGB1P09429 215 aaKnown RBP18.65■□□□□ 0.58
COL7A1-203ENST00000459756 POLR2MP0CAP2 368 aa18.65■□□□□ 0.58
COL7A1-203ENST00000459756 EIF2AK2P19525 551 aaKnown RBP18.65■□□□□ 0.58
COL7A1-203ENST00000459756 EXOSC10Q01780 885 aaKnown RBP18.65■□□□□ 0.58
COL7A1-203ENST00000459756 BRDTQ58F21 947 aaPredicted RBP18.65■□□□□ 0.58
COL7A1-203ENST00000459756 SYNE3Q6ZMZ3 975 aa18.65■□□□□ 0.58
COL7A1-203ENST00000459756 BADQ92934 168 aa18.65■□□□□ 0.58
COL7A1-203ENST00000459756 POLR3EQ9NVU0 708 aa18.65■□□□□ 0.58
COL7A1-203ENST00000459756 REC8O95072 547 aa18.64■□□□□ 0.57
COL7A1-203ENST00000459756 PLEKHA8P1O95397 391 aa18.64■□□□□ 0.57
COL7A1-203ENST00000459756 NR3C2P08235 984 aa18.64■□□□□ 0.57
COL7A1-203ENST00000459756 RAG1P15918 1043 aa18.64■□□□□ 0.57
COL7A1-203ENST00000459756 HOXA13P31271 388 aaPredicted RBP18.64■□□□□ 0.57
COL7A1-203ENST00000459756 ITGA7Q13683 1181 aa18.64■□□□□ 0.57
COL7A1-203ENST00000459756 ADCK5Q3MIX3 580 aa18.64■□□□□ 0.57
COL7A1-203ENST00000459756 LRIT3Q3SXY7 679 aa18.64■□□□□ 0.57
COL7A1-203ENST00000459756 CCDC62Q6P9F0 684 aa18.64■□□□□ 0.57
COL7A1-203ENST00000459756 SEPT14Q6ZU15 432 aa18.64■□□□□ 0.57
COL7A1-203ENST00000459756 SRBD1Q8N5C6 995 aaKnown RBP18.64■□□□□ 0.57
COL7A1-203ENST00000459756 FANCBQ8NB91 859 aa18.64■□□□□ 0.57
COL7A1-203ENST00000459756 SLC43A3Q8NBI5 491 aa18.64■□□□□ 0.57
COL7A1-203ENST00000459756 PIBF1Q8WXW3 757 aa18.64■□□□□ 0.57
COL7A1-203ENST00000459756 KCNB2Q92953 911 aa18.64■□□□□ 0.57
COL7A1-203ENST00000459756 KIAA1217Q5T5P2 1943 aa18.64■□□□□ 0.57
COL7A1-203ENST00000459756 TLR3O15455 904 aaKnown RBP18.63■□□□□ 0.57
COL7A1-203ENST00000459756 KPNA6O60684 536 aa18.63■□□□□ 0.57
COL7A1-203ENST00000459756 RXRAP19793 462 aa18.63■□□□□ 0.57
COL7A1-203ENST00000459756 MICU3Q86XE3 530 aa18.63■□□□□ 0.57
COL7A1-203ENST00000459756 FAM126BQ8IXS8 530 aa18.63■□□□□ 0.57
COL7A1-203ENST00000459756 PDCD2LQ9BRP1 358 aa18.63■□□□□ 0.57
COL7A1-203ENST00000459756 TBX21Q9UL17 535 aa18.63■□□□□ 0.57
COL7A1-203ENST00000459756 A6NJR5 290 aa18.62■□□□□ 0.57
COL7A1-203ENST00000459756 SOX1O00570 391 aaPredicted RBP18.62■□□□□ 0.57
COL7A1-203ENST00000459756 ARIH2O95376 493 aa18.62■□□□□ 0.57
COL7A1-203ENST00000459756 ITGB8P26012 769 aa18.62■□□□□ 0.57
COL7A1-203ENST00000459756 HSPA4P34932 840 aa18.62■□□□□ 0.57
COL7A1-203ENST00000459756 PURAQ00577 322 aaKnown RBP18.62■□□□□ 0.57
COL7A1-203ENST00000459756 APOA5Q6Q788 366 aa18.62■□□□□ 0.57
COL7A1-203ENST00000459756 TMTC3Q6ZXV5 915 aa18.62■□□□□ 0.57
COL7A1-203ENST00000459756 COPS5Q92905 334 aa18.62■□□□□ 0.57
COL7A1-203ENST00000459756 GRIN2DO15399 1336 aa18.62■□□□□ 0.57
COL7A1-203ENST00000459756 LAMA2P24043 3122 aaKnown RBP18.61■□□□□ 0.57
COL7A1-203ENST00000459756 TIMP1P01033 207 aa18.61■□□□□ 0.57
COL7A1-203ENST00000459756 GH1P01241 217 aa18.61■□□□□ 0.57
COL7A1-203ENST00000459756 CD4P01730 458 aa18.61■□□□□ 0.57
COL7A1-203ENST00000459756 MYL3P08590 195 aa18.61■□□□□ 0.57
COL7A1-203ENST00000459756 MYCLP12524 364 aaPredicted RBP18.61■□□□□ 0.57
COL7A1-203ENST00000459756 VSIG10LQ86VR7 867 aa18.61■□□□□ 0.57
COL7A1-203ENST00000459756 FCHSD1Q86WN1 690 aa18.61■□□□□ 0.57
COL7A1-203ENST00000459756 RAB11FIP4Q86YS3 637 aa18.61■□□□□ 0.57
COL7A1-203ENST00000459756 CMTR1Q8N1G2 835 aaKnown RBP18.61■□□□□ 0.57
COL7A1-203ENST00000459756 TCEANC2Q96MN5 208 aa18.61■□□□□ 0.57
COL7A1-203ENST00000459756 MTG1Q9BT17 334 aaPredicted RBP18.61■□□□□ 0.57
COL7A1-203ENST00000459756 ZBTB43O43298 467 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms